Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : gplots

Explore the latest package usage data for gplots in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 505
Total downloads: 35,670,094

More details on packages.ecosyste.ms - JSON

broadinstitute/gatk 4.5.0.0

Official release repository for GATK versions 4.x

  • version: 3.0.3
Latest release: 11 months ago - 31,988,536 downloads - 912 dependencies
broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

  • version: 3.0.1
Latest release: over 6 years ago - 1,387,112 downloads - 498 dependencies
nfcore/rnaseq dev

Docker Image for nf-core/rnaseq project.

  • version: 3.0.4
Latest release: about 4 years ago - 659,186 downloads - 208 dependencies
veupathdb/rserve 7

  • version: 3.1.3
Latest release: 12 months ago - 624,940 downloads - 550 dependencies
broadinstitute/viral-core latest

  • version: 3.0.3
Latest release: over 4 years ago - 151,955 downloads - 419 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 3.1.3
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 3.0.3
Latest release: 11 months ago - 86,066 downloads - 912 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 3.1.3
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
nfcore/smrnaseq dev

A Docker container for the nf-core/smrnaseq pipeline.

  • version: 3.0.1.1
Latest release: over 3 years ago - 38,754 downloads - 320 dependencies
broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 3.0.1.1
Latest release: over 4 years ago - 24,573 downloads - 417 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 3.1.3
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 3.1.1
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 3.1.3
Latest release: over 2 years ago - 13,673 downloads - 11,684 dependencies
vanallenlab/sv-pipeline filter_gt_029fa3b

  • version: 3.1.3
Latest release: over 1 year ago - 22,757 downloads - 1,231 dependencies
biocontainers/murasaki v1.68.6-8b1-deb_cv1

  • version: 3.0.1.1
Latest release: about 5 years ago - 7,975 downloads - 960 dependencies
biocontainers/murasaki-mpi v1.68.6-8b1-deb_cv1

  • version: 3.0.1.1
Latest release: about 5 years ago - 7,579 downloads - 960 dependencies
biocontainers/murasaki-common v1.68.6-8-deb_cv1

  • version: 3.0.1.1
Latest release: about 5 years ago - 7,560 downloads - 954 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 3.1.3
Latest release: over 2 years ago - 6,685 downloads - 12,259 dependencies
broadinstitute/viral-assemble latest

  • version: 3.0.3
Latest release: over 4 years ago - 4,464 downloads - 431 dependencies
broadinstitute/viral-phylo 2.0.21.5

  • version: 3.0.3
Latest release: over 4 years ago - 4,426 downloads - 431 dependencies
kbase/kbase sdkbase.latest

  • version: 2.17.0
Latest release: over 6 years ago - 4,258 downloads - 2,934 dependencies
patroonorg/patroondeps latest

  • version: 3.1.3
Latest release: over 1 year ago - 2,754 downloads - 1,677 dependencies
nfcore/bcellmagic dev

A preliminary container for the bcellmagic pipeline

  • version: 3.0.1.1
Latest release: over 3 years ago - 2,594 downloads - 298 dependencies
nfcore/smartseq2 dev

A docker container for the nf-core/smartseq2 pipeline.

  • version: 3.1.1
Latest release: over 3 years ago - 1,669 downloads - 257 dependencies
kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

  • version: 3.0.1
Latest release: almost 7 years ago - 1,055 downloads - 1,383 dependencies
kbase/metrics latest

  • version: 3.0.1.1
Latest release: over 3 years ago - 1,027 downloads - 973 dependencies
kbase/errorlogging develop

  • version: 3.0.1.1
Latest release: almost 4 years ago - 948 downloads - 973 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 3.1.1
Latest release: about 2 years ago - 1,202 downloads - 654 dependencies
intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

  • version: 3.0.1.1
Latest release: over 4 years ago - 38,602 downloads - 842 dependencies
intelliseqngs/task_bam-bsqr 1.2.2

  • version: 3.0.3
Latest release: almost 2 years ago - 30,911 downloads - 1,038 dependencies
intelliseqngs/task_bam-filter-mismatch 1.4.1

  • version: 3.0.3
Latest release: almost 2 years ago - 21,820 downloads - 1,138 dependencies
intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

  • version: 3.0.3
Latest release: almost 3 years ago - 12,626 downloads - 948 dependencies
intelliseqngs/gatk-4.1.7.0 1.0.4

  • version: 3.0.1.1
Latest release: over 4 years ago - 10,089 downloads - 1,006 dependencies
intelliseqngs/task_bam-metrics 1.2.8

  • version: 3.0.1.1
Latest release: about 4 years ago - 7,556 downloads - 1,007 dependencies
nfcore/scrnaseq dev

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 3.1.1
Latest release: over 3 years ago - 7,707 downloads - 423 dependencies
intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

  • version: 3.0.3
Latest release: almost 2 years ago - 5,097 downloads - 1,140 dependencies
nfcore/proteomicslfq dev

A Docker Container for label free quantification for proteomics data.

  • version: 3.1.1
Latest release: over 2 years ago - 5,384 downloads - 1,124 dependencies
nfcore/diaproteomics dev

A Docker container for nf-core/diaproteomics

  • version: 3.1.0
Latest release: over 3 years ago - 5,499 downloads - 488 dependencies
intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

  • version: 3.0.1.1
Latest release: over 4 years ago - 4,290 downloads - 842 dependencies
intelliseqngs/gatk-4.1.6.0 2.0.2

  • version: 3.0.1.1
Latest release: over 4 years ago - 3,337 downloads - 842 dependencies
intelliseqngs/task_mt-varcall-mutect2 1.1.2

  • version: 3.0.3
Latest release: over 1 year ago - 2,784 downloads - 1,038 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

  • version: 3.0.3
Latest release: over 1 year ago - 2,314 downloads - 1,040 dependencies
intelliseqngs/gatk-4.2.0.0 1.0.0

  • version: 3.0.3
Latest release: over 3 years ago - 2,311 downloads - 957 dependencies
intelliseqngs/task_vcf-concat 1.0.4

  • version: 3.0.3
Latest release: over 1 year ago - 2,566 downloads - 1,043 dependencies
intelliseqngs/task_vcf-anno-cosmic 2.0.0

  • version: 3.0.3
Latest release: about 1 year ago - 2,498 downloads - 346 dependencies
intelliseqngs/task_mt-realign 1.1.2

  • version: 3.0.3
Latest release: over 1 year ago - 2,028 downloads - 1,038 dependencies
intelliseqngs/task_bam-gatk-m2 1.1.2

  • version: 3.0.3
Latest release: almost 2 years ago - 1,949 downloads - 1,038 dependencies
intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

  • version: 3.0.3
Latest release: over 1 year ago - 1,947 downloads - 1,038 dependencies
intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

  • version: 3.0.3
Latest release: about 3 years ago - 1,698 downloads - 957 dependencies
intelliseqngs/task_vcf-prepare 1.0.3

  • version: 3.0.3
Latest release: over 1 year ago - 914 downloads - 1,038 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 3.0.1.1
Latest release: almost 6 years ago - 762 downloads - 9,716 dependencies
ocdr/ds-apps test2

  • version: 3.1.3
Latest release: 12 months ago - 3,555 downloads - 3,778 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 3.0.1
Latest release: almost 6 years ago - 1,158 downloads - 616 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: 3.0.1
Latest release: almost 6 years ago - 1,141 downloads - 413 dependencies
intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

  • version: 3.0.1.1
Latest release: over 4 years ago - 640 downloads - 842 dependencies
afcai2c/r-studio-dl latest

R Studio with Deep Learning AI/ML packages installed [builds upon jlab-eda]

  • version: 3.1.1
Latest release: over 2 years ago - 635 downloads - 1,650 dependencies
intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

  • version: 3.0.3
Latest release: almost 3 years ago - 614 downloads - 946 dependencies
kbase/kbase_base latest

KBase Base Image containing Core services and runtime

  • version: 2.17.0
Latest release: about 8 years ago - 510 downloads - 3,106 dependencies
kbase/sdkbase latest

  • version: 2.17.0
Latest release: almost 8 years ago - 476 downloads - 2,934 dependencies
dhspence/docker-sicer latest

  • version: 3.0.1
Latest release: almost 6 years ago - 765 downloads - 1,147 dependencies
recetox/aplcms latest

  • version: 3.0.3
Latest release: over 3 years ago - 386 downloads - 458 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 3.1.3
Latest release: about 1 year ago - 2,811 downloads - 1,464 dependencies
intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

  • version: 3.0.3
Latest release: almost 3 years ago - 362 downloads - 946 dependencies
intelliseqngs/task_vcf-concat-beagle 1.1.3

  • version: 3.0.3
Latest release: over 1 year ago - 364 downloads - 1,041 dependencies
intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

  • version: 3.0.3
Latest release: over 1 year ago - 312 downloads - 1,038 dependencies
intelliseqngs/resources longranger_v0.1

  • version: 3.0.1
Latest release: over 4 years ago - 312 downloads - 1,305 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

  • version: 3.0.3
Latest release: over 1 year ago - 308 downloads - 1,040 dependencies
dhspence/docker-basestation latest

  • version: 3.0.1
Latest release: over 5 years ago - 308 downloads - 1,132 dependencies
intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

  • version: 3.0.3
Latest release: over 1 year ago - 304 downloads - 1,142 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 3.0.3
Latest release: about 3 years ago - 302 downloads - 1,375 dependencies
mirekphd/ml-cpu-r35-jnb devel_2b2752c

  • version: 3.0.1
Latest release: over 6 years ago - 271 downloads - 9,222 dependencies
veitveit/polystest release-1.3.4

  • version: 3.1.3
Latest release: over 1 year ago - 245 downloads - 838 dependencies
intelliseqngs/task_pileup-merge 1.0.2

  • version: 3.0.3
Latest release: over 1 year ago - 281 downloads - 1,038 dependencies
trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

  • version: 3.0.1
Latest release: about 4 years ago - 212 downloads - 965 dependencies
koki/sctensor-experiments 20220208

  • version: 3.1.1
Latest release: almost 3 years ago - 206 downloads - 2,071 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 3.1.1
Latest release: almost 3 years ago - 354 downloads - 1,716 dependencies
recetox/ramclustr 1.1.0-recetox0

  • version: 3.0.3
Latest release: about 4 years ago - 191 downloads - 593 dependencies
koki/biocdev 20230818

  • version: 3.1.3
Latest release: over 1 year ago - 201 downloads - 1,504 dependencies
intelliseqngs/astrolabe 1.0.0

  • version: 3.0.1.1
Latest release: about 4 years ago - 188 downloads - 1,097 dependencies
prismcmap/sushi develop

  • version: 3.1.1
Latest release: 10 months ago - 221 downloads - 723 dependencies
intelliseqngs/bcl-to-fq 1.0.2

  • version: 3.0.3
Latest release: almost 2 years ago - 184 downloads - 1,047 dependencies
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

  • version: 3.0.3
Latest release: about 3 years ago - 165 downloads - 1,057 dependencies
biocontainers/bioconductor-ebseq v1.14.0-1-deb_cv1

  • version: 3.0.1
Latest release: over 6 years ago - 150 downloads - 418 dependencies
biocontainers/bioconductor-metagenomeseq v1.16.0-2-deb_cv1

  • version: 3.0.1
Latest release: over 6 years ago - 138 downloads - 417 dependencies
chgyi/metaware_rna_denovo latest

  • version: 3.0.1.1
Latest release: over 5 years ago - 132 downloads - 2,095 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 3.0.1
Latest release: over 6 years ago - 134 downloads - 9,302 dependencies
intelliseqngs/collect-hs-metrics 1.0.0

  • version: 3.0.1.1
Latest release: over 4 years ago - 131 downloads - 928 dependencies
intelliseqngs/gatk-4.2.4.1 1.0.1

  • version: 3.0.3
Latest release: almost 2 years ago - 161 downloads - 1,118 dependencies
dhspence/docker-manta 1.5.0

  • version: 3.0.1
Latest release: almost 6 years ago - 126 downloads - 1,191 dependencies
dragonflyscience/antips-tracks 2022-12-19

  • version: 3.1.3
Latest release: almost 2 years ago - 136 downloads - 1,741 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 3.1.1
Latest release: about 3 years ago - 111 downloads - 2,087 dependencies
kcapd/wings-genomics latest

WINGS workflow system with software for genomics operations.

  • version: 3.0.1
Latest release: about 4 years ago - 103 downloads - 1,468 dependencies
atttilacs/seurat_big latest

  • version: 3.1.3
Latest release: almost 2 years ago - 495 downloads - 997 dependencies