Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : nlme

Explore the latest package usage data for nlme in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 2,977
Total downloads: 262,222,073

More details on packages.ecosyste.ms - JSON

jupyter/all-spark-notebook x86_64-spark-3.5.0

Python, Scala, R and Spark Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

  • version: 3.1-163
Latest release: over 1 year ago - 74,897,375 downloads - 2,095 dependencies
broadinstitute/genomes-in-the-cloud 2.1.1

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

  • version: 3.1-117
Latest release: over 8 years ago - 41,234,014 downloads - 951 dependencies
jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

  • version: 3.1-163
Latest release: over 1 year ago - 34,322,165 downloads - 2,728 dependencies
broadinstitute/gatk 4.6.1.0

Official release repository for GATK versions 4.x

  • version: 3.1-150
Latest release: 3 months ago - 38,914,712 downloads - 912 dependencies
rocker/rstudio 4.4.2

RStudio Server image

  • version: 3.1-163, 3.1-162
Latest release: 3 months ago - 27,338,107 downloads - 600 dependencies
library/r-base 4.4.2

R is a system for statistical computation and graphics.

  • version: 3.1-163, 3.1-164
Latest release: 3 months ago - 10,260,864 downloads - 302 dependencies
rocker/tidyverse 4.4.1

Version-stable build of R, rstudio, and R packages

  • version: 3.1-162, 3.1-163
Latest release: 6 months ago - 25,141,853 downloads - 858 dependencies
openanalytics/shinyproxy-demo latest

Running Shiny apps in ShinyProxy

  • version: 3.1-155
Latest release: over 2 years ago - 3,782,068 downloads - 1,175 dependencies
mesosphere/spark-dev 8f6ac93a6ff61e9452f6f0cf6769c05a4646a6e7

spark testing

  • version: 3.1-144
Latest release: almost 3 years ago - 3,451,045 downloads - 886 dependencies
rocker/r-ver 4.4.2

Reproducible builds to fixed versions of R

  • version: 3.1-162, 3.1-163
Latest release: 3 months ago - 6,111,580 downloads - 311 dependencies
apache/zeppelin 0.11.2

Apache Zeppelin

  • version: 3.1-152
Latest release: 7 months ago - 3,777,498 downloads - 1,492 dependencies
rocker/shiny 4.4.2

  • version: 3.1-162, 3.1-163
Latest release: 3 months ago - 3,547,175 downloads - 792 dependencies
fpco/stack-build lts-22

GHC, tools (stack, cabal-install, alex, etc.), and system dev libs.

  • version: 3.1-155
Latest release: 12 months ago - 2,004,753 downloads - 2,168 dependencies
coala/base pre

A simple docker image featuring coala and it's dependencies.

  • version: 3.1-131
Latest release: over 7 years ago - 1,955,301 downloads - 1,827 dependencies
jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

  • version: 3.1-163
Latest release: over 1 year ago - 2,394,534 downloads - 1,718 dependencies
broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

  • version: 3.1-117
Latest release: over 6 years ago - 1,482,087 downloads - 498 dependencies
rocker/verse 4.4.2

Adds tex & related publishing packages to version-locked tidyverse image

  • version: 3.1-162, 3.1-163
Latest release: 3 months ago - 1,556,518 downloads - 1,104 dependencies
broadinstitute/picard 3.3.0

A set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats.

  • version: 3.1-155
Latest release: 4 months ago - 1,241,685 downloads - 640 dependencies
rocker/r-base 4.4.2

Basic R for Rocker And Official 'r-base'

  • version: 3.1-162
Latest release: 3 months ago - 1,052,632 downloads - 307 dependencies
rocker/geospatial 4.4.2

Docker-based Geospatial toolkit for R, built on versioned Rocker images

  • version: 3.1-163, 3.1-162
Latest release: 3 months ago - 835,840 downloads - 1,336 dependencies
bioconductor/bioconductor_docker RELEASE_3_20

Bioconductor Docker Images

  • version: 3.1-164, 3.1-163
Latest release: 3 months ago - 1,450,871 downloads - 1,397 dependencies
rocker/shiny-verse 4.4.2

Rocker Shiny image + Tidyverse R packages. Uses version-stable images.

  • version: 3.1-163, 3.1-162
Latest release: 3 months ago - 1,258,802 downloads - 950 dependencies
veupathdb/rserve 8.1.4

  • version: 3.1-160
Latest release: 4 months ago - 626,889 downloads - 550 dependencies
rocker/rstudio-stable 3.5.2

Build RStudio based on a debian:stable (debian:jessie image from rocker-versioned)

  • version: 3.1-137
Latest release: almost 6 years ago - 476,174 downloads - 296 dependencies
openanalytics/r-base 4.0.5

Ubuntu 20.04 LTS with R

  • version: 3.1-152
Latest release: over 3 years ago - 526,259 downloads - 324 dependencies
campsych/concerto-platform 5.0.27

Concerto is an open-source online computer adaptive testing (CAT) platform

  • version: 3.1-162
Latest release: about 2 years ago - 254,515 downloads - 1,942 dependencies
openanalytics/shinyproxy-rstudio-ide-demo 2023.06.0_421__4.3.1

Running RStudio inside ShinyProxy

  • version: 3.1-162
Latest release: over 1 year ago - 238,572 downloads - 357 dependencies
biocontainers/picard-tools v2.18.25dfsg-2-deb_cv1

  • version: 3.1-137
Latest release: over 5 years ago - 253,474 downloads - 711 dependencies
rocker/r-apt disco

R-related apt-get information

  • version: 3.1-144
Latest release: almost 5 years ago - 257,664 downloads - 346 dependencies
sagemath/sagemath-jupyter latest

SageMath is a free open-source mathematics software system.

  • version: 3.1-131
Latest release: over 6 years ago - 179,541 downloads - 314 dependencies
rhub/debian-gcc-devel latest

R-devel on Debian, compiled with GCC.

  • version: 3.1-164
Latest release: about 2 years ago - 179,847 downloads - 598 dependencies
broadinstitute/viral-core 2.0.21

  • version: 3.1-147
Latest release: over 4 years ago - 154,409 downloads - 419 dependencies
ccdlstaging/dr_downloaders 1.45.8

  • version: 3.1-131
Latest release: over 1 year ago - 127,834 downloads - 1,028 dependencies
dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

  • version: 3.1-128
Latest release: about 8 years ago - 115,446 downloads - 884 dependencies
mesosphere/kudo-spark-operator 3.0.0-1.1.0-rc3

  • version: 3.1-131
Latest release: about 4 years ago - 113,578 downloads - 968 dependencies
rocker/r-ubuntu jammy

Basic R container using Ubuntu LTS

  • version: 3.1-163
Latest release: about 2 years ago - 155,859 downloads - 383 dependencies
ashish1981/x86-r-z-appln latest

  • version: 3.1-144
Latest release: almost 4 years ago - 107,198 downloads - 1,150 dependencies
broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

  • version: 3.1-131
Latest release: almost 3 years ago - 103,038 downloads - 846 dependencies
mxnetci/build.ubuntu_gpu latest

  • version: 3.1-137
Latest release: over 5 years ago - 93,111 downloads - 1,412 dependencies
ashish1981/shinyapp-sarb latest

  • version: 3.1-149
Latest release: almost 4 years ago - 91,399 downloads - 1,042 dependencies
broadinstitute/terra-jupyter-aou 2.1.13

  • version: 3.1-160, 3.1-159
Latest release: about 2 years ago - 95,633 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: 3.1-131
Latest release: over 1 year ago - 94,460 downloads - 1,220 dependencies
rocker/binder 4.4.1

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

  • version: 3.1-162, 3.1-163
Latest release: 8 months ago - 107,789 downloads - 2,239 dependencies
rocker/ropensci 3.4.1

  • version: 3.1-137
Latest release: over 7 years ago - 88,724 downloads - 1,589 dependencies
rhub/ubuntu-gcc-release latest

R release on Ubuntu LTS

  • version: 3.1-163
Latest release: about 2 years ago - 86,153 downloads - 648 dependencies
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 3.1-150
Latest release: 5 months ago - 186,109 downloads - 912 dependencies
openanalytics/rdepot-app 2.4.1

  • version: 3.1-144
Latest release: 3 months ago - 83,352 downloads - 619 dependencies
rhub/rocker-gcc-san latest

Debian Testing, R-devel and AddressSanitizer

  • version: 3.1-163
Latest release: about 2 years ago - 76,005 downloads - 635 dependencies
rhub/fedora-clang-devel latest

R-devel on Fedora latest, with clang and gfortran

  • version: 3.1-164
Latest release: about 2 years ago - 75,336 downloads - 1,472 dependencies
rhub/debian-gcc-release latest

Latest released version of R, on Debian, compiled with GCC.

  • version: 3.1-164
Latest release: about 2 years ago - 79,371 downloads - 604 dependencies
rhub/fedora-gcc-devel latest

R-devel on Fedora latest

  • version: 3.1-164
Latest release: about 2 years ago - 73,475 downloads - 1,461 dependencies
rhub/debian-gcc-patched latest

R-patched on Debian Testing

  • version: 3.1-164
Latest release: about 2 years ago - 72,960 downloads - 596 dependencies
rhub/ubuntu-gcc-devel latest

R devel on Ubuntu GCC

  • version: 3.1-164
Latest release: about 2 years ago - 70,893 downloads - 626 dependencies
rhub/centos6-epel latest

  • version: 3.1-137
Latest release: about 4 years ago - 65,929 downloads - 363 dependencies
rhub/centos6-epel-rdt latest

  • version: 3.1-137
Latest release: over 4 years ago - 65,612 downloads - 381 dependencies
rocker/ml 4.4.1

Docker images with R + GPU support for machine learning libraries

  • version: 3.1-162, 3.1-163
Latest release: 8 months ago - 74,198 downloads - 939 dependencies
ccdlstaging/dr_salmon 1.45.8

  • version: 3.1-131
Latest release: over 1 year ago - 61,084 downloads - 916 dependencies
nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

  • version: 3.1-150
Latest release: over 2 years ago - 54,822 downloads - 352 dependencies
biocontainers/control-freec v11.5_cv1

  • version: 3.1-122
Latest release: about 5 years ago - 52,152 downloads - 432 dependencies
mxnetci/build.ubuntu_gpu_cu100 latest

  • version: 3.1-137
Latest release: almost 5 years ago - 49,343 downloads - 1,682 dependencies
nfcore/chipseq 1.2.2

A docker image for nf-core/chipseq

  • version: 3.1-150
Latest release: almost 4 years ago - 52,400 downloads - 309 dependencies
ashish1981/s390x-r-appln-z 3.6.3

  • version: 3.1-152
Latest release: almost 4 years ago - 44,688 downloads - 1,475 dependencies
180a51c0/gh-action-buildapp latest

  • version: 3.1-148
Latest release: over 4 years ago - 56,914 downloads - 1,987 dependencies
dit4c/dit4c-container-jupyterlab latest

DIT4C container for Jupyter Lab

  • version: 3.1-131
Latest release: almost 8 years ago - 41,688 downloads - 585 dependencies
nfcore/mag 1.2.0

  • version: 3.1-150
Latest release: almost 4 years ago - 38,626 downloads - 269 dependencies
nfcore/eager 2.5.2

A Docker image for the nf-core/eager pipeline.

  • version: 3.1-159
Latest release: 7 months ago - 46,224 downloads - 738 dependencies
rhub/debian-clang-devel latest

R-devel on Debian, compiled with clang, ISO-8859-15 default locale

  • version: 3.1-164
Latest release: about 2 years ago - 38,380 downloads - 626 dependencies
rocker/r-parallel 1.0.1

  • version: 3.1-141
Latest release: over 5 years ago - 29,803 downloads - 427 dependencies
tabbzi/terra-dogagingproject-genomic-reports latest

Low-pass sequencing data processing for the Dog Aging Project

  • version: 3.1-144
Latest release: about 3 years ago - 32,915 downloads - 664 dependencies
dit4c/dit4c-container-jupyter latest

  • version: 3.1-131
Latest release: almost 8 years ago - 25,937 downloads - 585 dependencies
rocker/ml-verse 4.4.1

  • version: 3.1-162, 3.1-163
Latest release: 8 months ago - 53,386 downloads - 1,414 dependencies
broadinstitute/viral-ngs 1.25.0

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 3.1-141
Latest release: over 5 years ago - 25,404 downloads - 417 dependencies
mxnetci/build.ubuntu_nightly_cpu latest

  • version: 3.1-137
Latest release: over 4 years ago - 24,286 downloads - 1,400 dependencies
arm64v8/r-base 4.4.2

R is a system for statistical computation and graphics.

  • version: 3.1-163
Latest release: 3 months ago - 25,373 downloads - 301 dependencies
nfcore/rnafusion 1.2.0

A Docker image for the nf-core/rnafusion pipeline.

  • version: 3.1-144
Latest release: over 4 years ago - 27,538 downloads - 1,302 dependencies