Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : nlme

Explore the latest package usage data for nlme in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 2,977
Total downloads: 262,222,073

More details on packages.ecosyste.ms - JSON

jupyter/all-spark-notebook x86_64-spark-3.5.0

Python, Scala, R and Spark Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

  • version: 3.1-163
Latest release: about 1 year ago - 74,157,453 downloads - 2,095 dependencies
broadinstitute/genomes-in-the-cloud 2.4.0-1501007820

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

  • version: 3.1-117
Latest release: over 7 years ago - 40,948,348 downloads - 951 dependencies
jupyter/datascience-notebook x86_64-python-3.11.6

Data Science Jupyter Notebook Python Stack from https://github.com/jupyter/docker-stacks

  • version: 3.1-163
Latest release: about 1 year ago - 31,656,816 downloads - 2,728 dependencies
broadinstitute/gatk 4.5.0.0

Official release repository for GATK versions 4.x

  • version: 3.1-150
Latest release: 12 months ago - 31,988,536 downloads - 912 dependencies
rocker/rstudio 4.3.2

RStudio Server image

  • version: 3.1-163, 3.1-162
Latest release: about 1 year ago - 24,776,064 downloads - 600 dependencies
library/r-base 4.3.2

R is a system for statistical computation and graphics.

  • version: 3.1-163, 3.1-164
Latest release: about 1 year ago - 9,431,502 downloads - 302 dependencies
rocker/tidyverse 4.3.2

Version-stable build of R, rstudio, and R packages

  • version: 3.1-162, 3.1-163
Latest release: about 1 year ago - 8,148,628 downloads - 858 dependencies
openanalytics/shinyproxy-demo latest

Image to demo how to deploy Shiny apps using ShinyProxy

  • version: 3.1-155
Latest release: over 2 years ago - 3,769,147 downloads - 1,175 dependencies
mesosphere/spark-dev 8f6ac93a6ff61e9452f6f0cf6769c05a4646a6e7

spark testing

  • version: 3.1-144
Latest release: almost 3 years ago - 3,445,764 downloads - 886 dependencies
rocker/r-ver 4.3.2

Reproducible builds to fixed versions of R

  • version: 3.1-162, 3.1-163
Latest release: 11 months ago - 4,598,234 downloads - 311 dependencies
apache/zeppelin 0.11.0

Apache Zeppelin

  • version: 3.1-152
Latest release: 11 months ago - 3,480,279 downloads - 1,492 dependencies
rocker/shiny 4.3.2

  • version: 3.1-162, 3.1-163
Latest release: about 1 year ago - 2,676,242 downloads - 792 dependencies
fpco/stack-build lts-21.25

GHC, tools (stack, cabal-install, alex, etc.), and system dev libs.

  • version: 3.1-155
Latest release: 11 months ago - 1,993,136 downloads - 2,168 dependencies
coala/base pre

A simple docker image featuring coala and it's dependencies.

  • version: 3.1-131
Latest release: over 7 years ago - 1,940,485 downloads - 1,827 dependencies
jupyter/r-notebook x86_64-python-3.11.6

R Jupyter Notebook Stack from https://github.com/jupyter/docker-stacks

  • version: 3.1-163
Latest release: about 1 year ago - 1,757,302 downloads - 1,718 dependencies
broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

  • version: 3.1-117
Latest release: over 6 years ago - 1,387,112 downloads - 498 dependencies
rocker/verse 4.3.2

Adds tex & related publishing packages to version-locked tidyverse image

  • version: 3.1-162, 3.1-163
Latest release: about 1 year ago - 1,337,043 downloads - 1,104 dependencies
broadinstitute/picard 3.1.1

A set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats.

  • version: 3.1-155
Latest release: about 1 year ago - 1,091,512 downloads - 640 dependencies
rocker/r-base 4.3.1

Basic R for Rocker And Official 'r-base'

  • version: 3.1-162
Latest release: over 1 year ago - 993,436 downloads - 307 dependencies
rocker/geospatial 4.3.2

Docker-based Geospatial toolkit for R, built on versioned Rocker images

  • version: 3.1-163, 3.1-162
Latest release: about 1 year ago - 744,200 downloads - 1,336 dependencies
bioconductor/bioconductor_docker devel-R-devel

Bioconductor Docker Images

  • version: 3.1-164, 3.1-163
Latest release: about 1 year ago - 1,124,807 downloads - 1,397 dependencies
rocker/shiny-verse 4.3.2

Rocker Shiny image + Tidyverse R packages. Uses version-stable images.

  • version: 3.1-163, 3.1-162
Latest release: about 1 year ago - 949,642 downloads - 950 dependencies
veupathdb/rserve 7

  • version: 3.1-160
Latest release: 12 months ago - 624,940 downloads - 550 dependencies
rocker/rstudio-stable latest

Build RStudio based on a debian:stable (debian:jessie image from rocker-versioned)

  • version: 3.1-137
Latest release: almost 6 years ago - 475,724 downloads - 296 dependencies
openanalytics/r-base latest

Ubuntu 20.04 LTS with R

  • version: 3.1-152
Latest release: over 3 years ago - 478,405 downloads - 324 dependencies
campsych/concerto-platform 6b14303

Concerto is an open-source online computer adaptive testing (CAT) platform

  • version: 3.1-162
Latest release: over 1 year ago - 241,668 downloads - 1,942 dependencies
openanalytics/shinyproxy-rstudio-ide-demo 2023.06.0_421__4.3.1

  • version: 3.1-162
Latest release: over 1 year ago - 235,722 downloads - 357 dependencies
biocontainers/picard-tools v2.18.25dfsg-2-deb_cv1

  • version: 3.1-137
Latest release: about 5 years ago - 208,967 downloads - 711 dependencies
rocker/r-apt disco

R-related apt-get information

  • version: 3.1-144
Latest release: over 4 years ago - 215,662 downloads - 346 dependencies
sagemath/sagemath-jupyter latest

SageMath is a free open-source mathematics software system.

  • version: 3.1-131
Latest release: over 6 years ago - 178,909 downloads - 314 dependencies
rhub/debian-gcc-devel latest

R-devel on Debian, compiled with GCC.

  • version: 3.1-164
Latest release: almost 2 years ago - 173,341 downloads - 598 dependencies
broadinstitute/viral-core latest

  • version: 3.1-147
Latest release: over 4 years ago - 151,955 downloads - 419 dependencies
ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 3.1-131
Latest release: 12 months ago - 124,831 downloads - 1,028 dependencies
dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

  • version: 3.1-128
Latest release: almost 8 years ago - 115,438 downloads - 884 dependencies
mesosphere/kudo-spark-operator 3.0.0-1.1.0-rc3

  • version: 3.1-131
Latest release: about 4 years ago - 113,528 downloads - 968 dependencies
rocker/r-ubuntu jammy

Basic R container using Ubuntu LTS

  • version: 3.1-163
Latest release: about 2 years ago - 142,420 downloads - 383 dependencies
ashish1981/x86-r-z-appln latest

  • version: 3.1-144
Latest release: over 3 years ago - 106,632 downloads - 1,150 dependencies
broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

  • version: 3.1-131
Latest release: over 2 years ago - 102,887 downloads - 846 dependencies
mxnetci/build.ubuntu_gpu latest

  • version: 3.1-137
Latest release: over 5 years ago - 93,104 downloads - 1,412 dependencies
ashish1981/shinyapp-sarb latest

  • version: 3.1-149
Latest release: over 3 years ago - 91,367 downloads - 1,042 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 3.1-160, 3.1-159
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 3.1-131
Latest release: about 1 year ago - 92,270 downloads - 1,220 dependencies
rocker/binder 4.3.2

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

  • version: 3.1-162, 3.1-163
Latest release: about 1 year ago - 95,871 downloads - 2,239 dependencies
rocker/ropensci latest

  • version: 3.1-137
Latest release: over 6 years ago - 88,618 downloads - 1,589 dependencies
rhub/ubuntu-gcc-release latest

R release on Ubuntu LTS

  • version: 3.1-163
Latest release: almost 2 years ago - 85,608 downloads - 648 dependencies
broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 3.1-150
Latest release: 11 months ago - 86,066 downloads - 912 dependencies
openanalytics/rdepot-app 2.0.0-SNAPSHOT

  • version: 3.1-144
Latest release: about 1 year ago - 82,460 downloads - 619 dependencies
rhub/rocker-gcc-san latest

Debian Testing, R-devel and AddressSanitizer

  • version: 3.1-163
Latest release: almost 2 years ago - 75,700 downloads - 635 dependencies
rhub/fedora-clang-devel latest

R-devel on Fedora latest, with clang and gfortran

  • version: 3.1-164
Latest release: almost 2 years ago - 74,832 downloads - 1,472 dependencies
rhub/debian-gcc-release latest

Latest released version of R, on Debian, compiled with GCC.

  • version: 3.1-164
Latest release: almost 2 years ago - 74,500 downloads - 604 dependencies
rhub/fedora-gcc-devel latest

R-devel on Fedora latest

  • version: 3.1-164
Latest release: almost 2 years ago - 73,061 downloads - 1,461 dependencies
rhub/debian-gcc-patched latest

R-patched on Debian Testing

  • version: 3.1-164
Latest release: almost 2 years ago - 72,547 downloads - 596 dependencies
rhub/ubuntu-gcc-devel latest

R devel on Ubuntu GCC

  • version: 3.1-164
Latest release: almost 2 years ago - 70,774 downloads - 626 dependencies
rhub/centos6-epel latest

  • version: 3.1-137
Latest release: almost 4 years ago - 65,910 downloads - 363 dependencies
rhub/centos6-epel-rdt latest

  • version: 3.1-137
Latest release: over 4 years ago - 65,597 downloads - 381 dependencies
rocker/ml 4.3.2

Docker images with R + GPU support for machine learning libraries

  • version: 3.1-162, 3.1-163
Latest release: 11 months ago - 66,768 downloads - 939 dependencies
ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 3.1-131
Latest release: about 1 year ago - 57,229 downloads - 916 dependencies
nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

  • version: 3.1-150
Latest release: over 2 years ago - 54,429 downloads - 352 dependencies
biocontainers/control-freec v11.5_cv1

  • version: 3.1-122
Latest release: almost 5 years ago - 52,130 downloads - 432 dependencies
mxnetci/build.ubuntu_gpu_cu100 latest

  • version: 3.1-137
Latest release: over 4 years ago - 49,338 downloads - 1,682 dependencies
nfcore/chipseq dev

A docker image for nf-core/chipseq

  • version: 3.1-150
Latest release: over 3 years ago - 50,176 downloads - 309 dependencies
ashish1981/s390x-r-appln-z latest

  • version: 3.1-152
Latest release: over 3 years ago - 44,192 downloads - 1,475 dependencies
180a51c0/gh-action-buildapp latest

  • version: 3.1-148
Latest release: over 4 years ago - 48,804 downloads - 1,987 dependencies
dit4c/dit4c-container-jupyterlab latest

DIT4C container for Jupyter Lab

  • version: 3.1-131
Latest release: over 7 years ago - 41,682 downloads - 585 dependencies
nfcore/mag dev

  • version: 3.1-150
Latest release: over 3 years ago - 38,524 downloads - 269 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 3.1-159
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
rhub/debian-clang-devel latest

R-devel on Debian, compiled with clang, ISO-8859-15 default locale

  • version: 3.1-164
Latest release: almost 2 years ago - 35,226 downloads - 626 dependencies
rocker/r-parallel 1.0.1

  • version: 3.1-141
Latest release: about 5 years ago - 29,497 downloads - 427 dependencies
tabbzi/terra-dogagingproject-genomic-reports latest

Low-pass sequencing data processing for the Dog Aging Project

  • version: 3.1-144
Latest release: almost 3 years ago - 32,224 downloads - 664 dependencies
dit4c/dit4c-container-jupyter latest

  • version: 3.1-131
Latest release: over 7 years ago - 25,919 downloads - 585 dependencies
rocker/ml-verse 4.3.2

  • version: 3.1-162, 3.1-163
Latest release: 11 months ago - 34,310 downloads - 1,414 dependencies
broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 3.1-141
Latest release: over 4 years ago - 24,573 downloads - 417 dependencies
mxnetci/build.ubuntu_nightly_cpu latest

  • version: 3.1-137
Latest release: over 4 years ago - 24,281 downloads - 1,400 dependencies
arm64v8/r-base 4.3.1

R is a system for statistical computation and graphics.

  • version: 3.1-163
Latest release: over 1 year ago - 22,738 downloads - 301 dependencies
nfcore/rnafusion fusioninspector_2.8.0dev

A Docker image for the nf-core/rnafusion pipeline.

  • version: 3.1-144
Latest release: over 2 years ago - 24,036 downloads - 1,302 dependencies