Data

Tools

Indexes

Applications

Experiments

Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : ape

Explore the latest package usage data for ape in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 325
Total downloads: 894,238
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

dragonflyscience/rsi-website 2021-07-20

  • version: 5.3
Latest release: over 4 years ago - 179 downloads - 1,423 dependencies
robertplayer/scidap-qiime2 stable

  • version: 5.7-1
Latest release: over 2 years ago - 34 downloads - 527 dependencies
btrspg/r-env cache

  • version: 5.7-1
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
dragonflyscience/overseer2022 2023-03-30.2

  • version: 5.6-2
Latest release: almost 3 years ago - 329 downloads - 2,501 dependencies
dragonflyscience/dragonverse-22.04 2025-10-02

  • version: 5.7-1
Latest release: 4 months ago - 2,208 downloads - 1,870 dependencies
veitveit/coexpresso 0d86fb51b4b4cdc9a21ad900ae0f30e1eb9e828f

  • version: 5.6-2
Latest release: 5 months ago - 449 downloads - 1,733 dependencies
vnmd/afni_22.1.14 latest

  • version: 5.6-2
Latest release: over 3 years ago - 112 downloads - 2,186 dependencies
dragonflyscience/shellington 2021-09-14

  • version: 5.5
Latest release: over 4 years ago - 812 downloads - 1,446 dependencies
austinhpatton123/cogeqc-1.2.0_r-4.2.2 latest

  • version: 5.6-2
Latest release: about 3 years ago - 186 downloads - 451 dependencies
vanessa/seurat latest

  • version: 5.1
Latest release: over 7 years ago - 58 downloads - 475 dependencies
mlepetit/ranalysis 3.3.4

  • version: 5.5
Latest release: about 3 years ago - 221 downloads - 2,131 dependencies
dragonflyscience/nefd-18.04 2021-12-09

  • version: 5.5
Latest release: about 4 years ago - 641 downloads - 1,549 dependencies
btrspg/genekitr 0.0.1

  • version: 5.7-1
Latest release: over 1 year ago - 204 downloads - 1,987 dependencies
vnmd/afni_20.3.01 latest

  • version: 5.4-1
Latest release: about 5 years ago - 42 downloads - 937 dependencies
weizhoujp/rchtc 4.3.0

  • version: 5.7-1
Latest release: over 2 years ago - 141 downloads - 738 dependencies
globusgenomics/picrust 1.0

  • version: 5.6-2
Latest release: almost 3 years ago - 130 downloads - 595 dependencies
pvstodghill/pipeline-pirate 2023-11-20

  • version: 5.7-1
Latest release: about 2 years ago - 30 downloads - 347 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 5.7-1
Latest release: almost 3 years ago - 149 downloads - 512 dependencies
tariship/dev_sync_directories latest

  • version: 5.7-1
Latest release: over 2 years ago - 396 downloads - 421 dependencies
hdsu/etbii2023 latest

  • version: 5.6-2
Latest release: about 3 years ago - 138 downloads - 358 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 5.6-2
Latest release: about 3 years ago - 195 downloads - 382 dependencies
rocker/ropensci 3.4.1

  • version: 5.1
Latest release: over 8 years ago - 88,870 downloads - 1,589 dependencies
jdselwyn/lsd2 latest

  • version: 5.7-1
Latest release: almost 3 years ago - 105 downloads - 43 dependencies
cheyne0328/rstudio zxy

  • version: 5.7-1
Latest release: over 2 years ago - 24 downloads - 775 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 5.1
Latest release: over 7 years ago - 443 downloads - 9,302 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: 5.7-1
Latest release: over 2 years ago - 332 downloads - 571 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 5.7-1
Latest release: over 2 years ago - 155 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 5.7
Latest release: almost 3 years ago - 98 downloads - 290 dependencies
nathanprovin/cellcom 1.2.2

  • version: 5.7-1
Latest release: over 2 years ago - 189 downloads - 596 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 5.7-1
Latest release: over 2 years ago - 26 downloads - 1,061 dependencies
dragonflyscience/auxo2022-report 2022-11-15

  • version: 5.5
Latest release: about 3 years ago - 188 downloads - 1,499 dependencies
ipbhalle/biobyte latest

  • version: 5.7-1
Latest release: over 2 years ago - 28 downloads - 1,311 dependencies
mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

  • version: 5.1
Latest release: over 7 years ago - 43 downloads - 9,414 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 5.6-2
Latest release: about 3 years ago - 51 downloads - 897 dependencies
broadcptac/panoply_so_nmf_report 1_3

  • version: 5.4-1
Latest release: over 2 years ago - 37 downloads - 725 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 5.6-2
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 5.7-1
Latest release: over 2 years ago - 60 downloads - 2,274 dependencies
dragonflyscience/dragonverse-kyuhan v2

  • version: 5.5
Latest release: almost 4 years ago - 234 downloads - 2,379 dependencies
omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 5.7-1
Latest release: 2 months ago - 1,916 downloads - 1,420 dependencies
dragonflyscience/antips-threats 2023-11-13

  • version: 5.7-1
Latest release: about 2 years ago - 515 downloads - 1,951 dependencies
socioconfused/docker_r latest

  • version: 5.7-1
Latest release: almost 3 years ago - 164 downloads - 999 dependencies
biocontainers/bioconductor-phyloseq v1.19.1-2-deb_cv1

  • version: 4.0
Latest release: over 7 years ago - 151 downloads - 485 dependencies
mfsentma/atacseq latest

  • version: 5.7-1
Latest release: almost 3 years ago - 34 downloads - 852 dependencies
evolbioinfo/treestructure a831a66

treestructure R package (Volz et al. bioRxiv 704528; doi: https://doi.org/10.1101/704528)

  • version: 5.3
Latest release: about 6 years ago - 50 downloads - 508 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 5.7-1
Latest release: almost 3 years ago - 201 downloads - 752 dependencies
cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

  • version: 5.7-1
Latest release: over 2 years ago - 47 downloads - 1,604 dependencies
cjchen/gxuclass 1.0

  • version: 5.7-1
Latest release: over 2 years ago - 19 downloads - 657 dependencies
dragonflyscience/swa-flood-map 2023-03-27

  • version: 5.6-2
Latest release: almost 3 years ago - 408 downloads - 2,532 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 5.6-2
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
evolbioinfo/r-evol v4.2.2

r with ape and big.phylo packages

  • version: 5.7-1
Latest release: almost 3 years ago - 155 downloads - 594 dependencies
dragonflyscience/antips-tracks 2022-12-19

  • version: 5.6-2
Latest release: about 3 years ago - 320 downloads - 1,741 dependencies
dragonflyscience/antip-ipm-18.04 2022-06-23-2

  • version: 5.6-2
Latest release: over 3 years ago - 356 downloads - 2,528 dependencies
mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

  • version: 5.7-1
Latest release: almost 3 years ago - 62 downloads - 1,332 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 5.5
Latest release: about 3 years ago - 94 downloads - 2,142 dependencies
chiajungl/scrna-extra 4.4.0-4.4

  • version: 5.7-1
Latest release: over 1 year ago - 920 downloads - 1,350 dependencies
uvarc/rstudio tam5xe

  • version: 5.7-1
Latest release: over 2 years ago - 37 downloads - 1,062 dependencies
tercen/normalyzer_operator 0.1.4

  • version: 5.6-2
Latest release: almost 2 years ago - 101 downloads - 590 dependencies
albertea/numbat_light 02

  • version: 5.7-1
Latest release: over 2 years ago - 254 downloads - 301 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 5.6-2
Latest release: about 3 years ago - 33 downloads - 598 dependencies
andrewatmp/qiime_unzip latest

  • version: 5.7-1
Latest release: over 2 years ago - 151 downloads - 598 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 5.7-1
Latest release: over 2 years ago - 293 downloads - 529 dependencies
broadcptacdev/activedriver_mimp latest

  • version: 5.7-1
Latest release: almost 3 years ago - 92 downloads - 374 dependencies
crpeters/r-methylkit 4.2.1

  • version: 5.6-2
Latest release: about 3 years ago - 80 downloads - 383 dependencies
stefanucciluca/tregopathies latest

  • version: 5.7-1
Latest release: over 2 years ago - 91 downloads - 488 dependencies
biocorecrg/microbiomeprofile 0.4

  • version: 5.7-1
Latest release: about 2 years ago - 106 downloads - 267 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 5.7-1
Latest release: 9 months ago - 2,648 downloads - 757 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 5.4-1
Latest release: almost 5 years ago - 13 downloads - 435 dependencies
sornnujah/sk-bactopia-nullarbor-report alpha1

  • version: 5.7
Latest release: almost 3 years ago - 180 downloads - 684 dependencies
gyusikhwang/tgs v1

  • version: 5.6-2
Latest release: almost 3 years ago - 58 downloads - 1,095 dependencies
eduar2/cami latest

  • version: 5.6-2
Latest release: about 3 years ago - 27 downloads - 211 dependencies
emersonchao/dsc180b latest

  • version: 5.6-2
Latest release: almost 3 years ago - 62 downloads - 2,266 dependencies
broadcptac/panoply_so_nmf_sankey_report DEV

  • version: 5.4-1
Latest release: over 2 years ago - 74 downloads - 383 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 5.3
Latest release: over 5 years ago - 10 downloads - 431 dependencies
dragonflyscience/nefd 2020-10-02

  • version: 5.4
Latest release: over 5 years ago - 38 downloads - 377 dependencies
aaelonyaeg/strat-aeg-py 20230905

  • version: 5.7-1
Latest release: over 2 years ago - 344 downloads - 1,730 dependencies
bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

  • version: 5.4-1
Latest release: over 1 year ago - 68 downloads - 421 dependencies
evafastpf/commot 0.1

  • version: 5.7-1
Latest release: over 2 years ago - 62 downloads - 1,877 dependencies
mpaltsai/biotextquest_top2vec 27122022

  • version: 5.6-2
Latest release: about 3 years ago - 212 downloads - 476 dependencies
dragonflyscience/vtnz 2023-09-05

  • version: 5.6-2
Latest release: over 2 years ago - 413 downloads - 1,229 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 5.6-2
Latest release: about 3 years ago - 22 downloads - 598 dependencies
brusconi/seurat new

  • version: 5.7-1
Latest release: over 1 year ago - 146 downloads - 536 dependencies
stormgod/deepmaps-cpu latest

  • version: 5.7
Latest release: almost 3 years ago - 114 downloads - 1,710 dependencies
biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

  • version: 5.7-1
Latest release: almost 2 years ago - 807 downloads - 853 dependencies
omicschef/epigenomechef v1.1.5

  • version: 5.7-1
Latest release: almost 2 years ago - 414 downloads - 1,066 dependencies
nfancy/scflow 0.7.4

  • version: 5.7-1
Latest release: almost 2 years ago - 300 downloads - 778 dependencies
victoorramos/hiv_screening latest

  • version: 5.6-2
Latest release: about 3 years ago - 137 downloads - 218 dependencies
maitner/example latest

  • version: 5.6-2
Latest release: about 3 years ago - 19 downloads - 418 dependencies
vnmd/afni_20.2.00 20200707

  • version: 5.4
Latest release: over 5 years ago - 35 downloads - 897 dependencies
qdidiscoveryservices/pseudobulk 2.0.2

  • version: 5.4-1
Latest release: over 1 year ago - 620 downloads - 1,112 dependencies
jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

  • version: 5.7-1
Latest release: 3 months ago - 1,863 downloads - 3,823 dependencies
cliu97/r4.3_seurat latest

  • version: 5.8-1
Latest release: over 2 years ago - 26 downloads - 776 dependencies
pecan/depends 4.0.2

Image that contains all the required external packages needed for PEcAn.

  • version: 5.7-1
Latest release: almost 5 years ago - 85,775 downloads - 1,274 dependencies
dragonflyscience/dragonpy-18.04 2022-03-14

  • version: 5.5
Latest release: almost 4 years ago - 30 downloads - 466 dependencies
payne6861/clutserprofiler v1.0.0

  • version: 5.6-2
Latest release: about 3 years ago - 15 downloads - 1,793 dependencies
bixbeta/pavian v1

  • version: 5.4-1
Latest release: about 3 years ago - 23 downloads - 388 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 5.7-1
Latest release: over 2 years ago - 207 downloads - 2,089 dependencies
broadcptacdev/activedriver latest

  • version: 5.4-1
Latest release: almost 3 years ago - 128 downloads - 720 dependencies
dragonflyscience/dragonpy-20.04 2022-03-09

  • version: 5.5
Latest release: almost 4 years ago - 39 downloads - 1,212 dependencies
sheddn/bioinformatics-tools latest

  • version: 5.7-1
Latest release: about 3 years ago - 60 downloads - 2,518 dependencies