qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

btrspg/r-env cache

koki/urchin_workflow_seurat 20250213

mlepetit/ranalysis 3.3.4

yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

crukcibioinformatics/sequencingbase 9.3.4

scgfacility/rstudio-course22 v0.11

image used to run the course 2022

nciccbr/ccbr_r_4.3.0 v1

qdidiscoveryservices/seurat_cell_annotation latest

haileyzhang/phospho-analyst v1.0.2

qdidiscoveryservices/bam_to_10x_counts latest

alanocallaghan/high-dimensional-stats-r latest

sagnikbanerjee15/ngpint 1.0.0

chgyi/bio 3.5.1

haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

fallingstar10/hbsigrocker latest

avi156/rocker-binder-upd 4.2.2

dhspence/docker-manta 1.5.0

mlepetit/rnormalisation 1.0.0

chiajungl/scrna-extra 4.4.0-4.4

luisas/rde latest

atttilacs/dsp_geomxtools latest

natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

nciccbr/ccbr_fraser_1.10.2 latest

jafoltz/sc_python 8

daltoncp/rstudio_celeganssinglecell 4.2_12

lishuangshuang3/dnbc4dev 2.0.3

luisas/r_sc.simg latest

dhspence/docker-rstudio-python latest

crpeters/r-methylkit 4.2.1

stefanucciluca/tregopathies latest

etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

pennsive/mstools 4.2-amd64

evafastpf/commot 0.1

vgonzenbach/rstudio 4.2

philipp02/pathway v1

brusconi/seurat new

sameetmehta/docker_report_apptainer devel

am5747/methylation latest

weishwu/planet 12052022

apollodorus/polyglot v1

nfancy/scflow 0.7.4

fluentin55/singlecell_docker 1.2

mhettich0years/r-images v1.1.2

yosuketanigawa/rstudio_yt latest

muhengliao/r_docker2 genome

dhspence/docker-hiccompare latest

chiajungl/scrna 4.4.0-4.4

compbiocore/dscov_sct 20221201

daltoncp/rstudio_celegansbulksequencing 4.2_3

repbioinfo/transformgampoi latest

weishwu/nanomethphase 1.2.0

jenfisher7/rstudio_sbae latest

bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

jingxin/terrascpipe v0

koki/sctensor-workshop sha-fa8c4cf

dsouzd04/himc_zellkonverter 1.6.5

jackiezhuqi/bio-rstudio latest

winuthayanon/rstudio 4.3.0

markataylor/r_yufree v1.0.0

mziemann/meth_analysis latest

Based on BioC release 3.14, this image is designed for analysis of infinium methylation array data

dabbleofdevops/r-datascience 4.2.2

crukmi/nas-app latest

singha53/modc v0.1

jonasmrr/scrnaseq-pipeline latest

jordanwhitlock/setbp1_manuscript_panda_1.0.1 latest

imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

felixschlesinger/assign_types v0.2

gaspardr/r-env test

My R environment for analyses and development

ycli1995/bioinfo_dev 1.1.0

ucigenomics/spatiallibd latest

dnbelabc4/dnbc4dev 2.1.2

wyangwu/r4.1.2 latest

compbiocore/jupyterhub-docker-images-jh_image 20230524

bioxfu/xseurat2 latest

dongminshin/sc_ppl 1.71

haileyzhang/fragpipe-analyst v1.13

A Docker container of Fragpipe-Analyst

wlc27/dcanr v1

chiajungl/seurat 4.4.0-4.4

apollodorus/genentech-jp v1

robertplayer/scidap-genelists v5.0.0

fallingstar10/gmadeomicsrocker tiny

vidhyagnanasekaran/rocker-single-cell v1

tomasgomes/nextflow_kallisto_sc 0.3

gongx030/ensemblemerge 2.1.24

Docker image for running ensemblemerge package.

igrisch/seuratharmony latest

bbeacosta/sctype latest

luisas/r_sc latest

gnwanne/decontx latest

wilfriedguiblet/fraser v0.1

daemontus/software-cell-oracle latest

trust1/jmml latest

JMML classifier

alkoenig08/harmonyseurat latest

Docker container built on satijalab/seurat with Broad Institute's "Harmony" package installed.

winuthayanon/seurat 4.3.0

ajhodgkinson/mitogwas latest

mirekphd/ml-cpu-r40-rs-cust 20230912

dhspence/docker-genomic-analysis 122121

From Chris Miller's example