Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : HDF5Array

Explore the latest package usage data for HDF5Array in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 156
Total downloads: 72,508

More details on packages.ecosyste.ms - JSON

mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 1.28.1
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.14.4
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 1.21.0
Latest release: about 3 years ago - 3,660 downloads - 1,218 dependencies
dhspence/docker-biscuit latest

  • version: 1.8.1
Latest release: almost 6 years ago - 1,935 downloads - 807 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 1.14.0
Latest release: about 2 years ago - 1,202 downloads - 654 dependencies
dhspence/docker-sicer latest

  • version: 1.8.1
Latest release: over 5 years ago - 765 downloads - 1,147 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.22.1
Latest release: about 1 year ago - 2,811 downloads - 1,464 dependencies
dhspence/docker-basestation latest

  • version: 1.8.1
Latest release: over 5 years ago - 308 downloads - 1,132 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 1.16.0
Latest release: about 3 years ago - 302 downloads - 1,375 dependencies
dhspence/docker-dss latest

  • version: 1.14.3
Latest release: over 4 years ago - 367 downloads - 1,127 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 1.20.0
Latest release: almost 3 years ago - 354 downloads - 1,716 dependencies
koki/biocdev 20230818

  • version: 1.29.3
Latest release: about 1 year ago - 201 downloads - 1,504 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 1.22.1
Latest release: almost 2 years ago - 172 downloads - 962 dependencies
chgyi/bio 3.5.1

  • version: 1.8.1
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.8.1
Latest release: almost 6 years ago - 126 downloads - 1,191 dependencies
dhspence/docker-hiccompare latest

  • version: 1.14.3
Latest release: over 3 years ago - 113 downloads - 1,271 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 1.21.0
Latest release: about 3 years ago - 111 downloads - 2,087 dependencies
atttilacs/dsp_geomxtools latest

  • version: 1.22.1
Latest release: about 2 years ago - 114 downloads - 871 dependencies
atttilacs/seurat_big latest

  • version: 1.22.1
Latest release: almost 2 years ago - 495 downloads - 997 dependencies
jafoltz/scclassify latest

  • version: 1.22.1
Latest release: almost 2 years ago - 90 downloads - 1,079 dependencies
testalabgh/downstream signac-1.4.0

  • version: 1.22.1
Latest release: over 1 year ago - 485 downloads - 3,517 dependencies
mlepetit/ranalysis 3.3.4

  • version: 1.20.0
Latest release: almost 2 years ago - 79 downloads - 2,131 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 1.26.0
Latest release: almost 2 years ago - 75 downloads - 382 dependencies
qdidiscoveryservices/ssgsea 1.0

  • version: 1.26.0
Latest release: almost 2 years ago - 65 downloads - 665 dependencies
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520

  • version: 1.14.1
Latest release: almost 5 years ago - 55 downloads - 1,313 dependencies
dhspence/docker-vep 93

  • version: 1.8.1
Latest release: over 5 years ago - 53 downloads - 1,191 dependencies
qdidiscoveryservices/bam_to_10x_counts_pandoc latest

  • version: 1.22.1
Latest release: almost 2 years ago - 51 downloads - 964 dependencies
koki/delayedtensor-experiments 20230818

  • version: 1.28.1
Latest release: about 1 year ago - 57 downloads - 1,295 dependencies
koki/tensor-projects-machima 20220827

  • version: 1.24.2
Latest release: about 2 years ago - 49 downloads - 1,441 dependencies
qdidiscoveryservices/batch_correction latest

  • version: 1.16.1
Latest release: almost 4 years ago - 40 downloads - 790 dependencies
trust1/rbox v1

Methylation array work toolbox

  • version: 1.18.1
Latest release: over 1 year ago - 48 downloads - 912 dependencies
koki/urchin_workflow_seurat 20230616

  • version: 1.26.0
Latest release: over 1 year ago - 63 downloads - 1,471 dependencies
dmiller15/minfi 4.2.0

  • version: 1.24.0
Latest release: over 2 years ago - 35 downloads - 1,415 dependencies
bryanfisk/capybara latest

  • version: 1.22.1
Latest release: almost 2 years ago - 35 downloads - 1,067 dependencies
qdidiscoveryservices/seurat_cell_annotation latest

  • version: 1.26.0
Latest release: almost 2 years ago - 34 downloads - 699 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 1.27.0
Latest release: almost 2 years ago - 91 downloads - 1,601 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 1.23.2
Latest release: almost 3 years ago - 28 downloads - 2,335 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 1.26.0
Latest release: 11 months ago - 89 downloads - 1,496 dependencies
mlepetit/rnormalisation 1.0

  • version: 1.20.0
Latest release: almost 2 years ago - 33 downloads - 2,142 dependencies
luisas/rde latest

  • version: 1.14.4
Latest release: almost 4 years ago - 20 downloads - 549 dependencies
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5

  • version: 1.28.1
Latest release: about 1 year ago - 58 downloads - 6,961 dependencies
luisas/r_sc latest

  • version: 1.14.4
Latest release: about 4 years ago - 18 downloads - 536 dependencies
shl198/sc_ppl 202306

  • version: 1.28.1
Latest release: over 1 year ago - 52 downloads - 2,005 dependencies
haileyzhang/fragpipe-analyst v0.23

A Docker container of Fragpipe-Analyst

  • version: 1.26.0
Latest release: over 1 year ago - 34 downloads - 1,511 dependencies
gongx030/ensemblemerge 2.1.24

Docker image for running ensemblemerge package.

  • version: 1.26.0
Latest release: almost 2 years ago - 18 downloads - 546 dependencies
gnwanne/decontx latest

  • version: 1.26.0
Latest release: almost 2 years ago - 18 downloads - 938 dependencies
entsupml/r-with-libraries latest

  • version: 1.26.0
Latest release: almost 2 years ago - 14 downloads - 992 dependencies
qdidiscoveryservices/ubuntu-1604-pipeline_docker-r_and_bioconductor latest

  • version: 1.14.4
Latest release: about 4 years ago - 13 downloads - 1,153 dependencies
dhspence/docker-wg-basestation latest

  • version: 1.14.3
Latest release: almost 4 years ago - 13 downloads - 1,126 dependencies
lemoniada/test pipeline

  • version: 1.26.0
Latest release: almost 2 years ago - 13 downloads - 1,181 dependencies
qdidiscoveryservices/sc_pip_r_and_py latest

  • version: 1.18.0
Latest release: almost 4 years ago - 12 downloads - 1,097 dependencies
haileyzhang/phospho-analyst v1.0.1

  • version: 1.26.0
Latest release: 12 months ago - 50 downloads - 796 dependencies
qdidiscoveryservices/cellranger7.1.0_py3_r4 latest

  • version: 1.22.1
Latest release: almost 2 years ago - 12 downloads - 1,029 dependencies
luisas/r_sc.simg latest

  • version: 1.14.4
Latest release: almost 4 years ago - 12 downloads - 260 dependencies
crpeters/r-methylkit 4.2.1

  • version: 1.26.0
Latest release: almost 2 years ago - 12 downloads - 383 dependencies
bioconductor/ismb.osca 124cbc0

  • version: 1.28.1
Latest release: over 1 year ago - 299 downloads - 1,422 dependencies
alexthiery/seurat-monocle 0.1

  • version: 1.18.1
Latest release: almost 2 years ago - 27 downloads - 1,062 dependencies
abelean/seurat_azimuth 5b

  • version: 1.22.1
Latest release: over 1 year ago - 343 downloads - 1,141 dependencies
markataylor/r_yufree v1.0.0

  • version: 1.26.0
Latest release: almost 2 years ago - 14 downloads - 1,514 dependencies
vgonzenbach/rstudio 4.2

  • version: 1.24.2
Latest release: almost 2 years ago - 11 downloads - 528 dependencies
bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

  • version: 1.28.1, 1.26.0
Latest release: 12 months ago - 33 downloads - 1,150 dependencies
philipp02/pathway v1

  • version: 1.27.0
Latest release: almost 2 years ago - 10 downloads - 345 dependencies
pennsive/mstools 4.2-amd64

  • version: 1.26.0
Latest release: over 1 year ago - 51 downloads - 303 dependencies
sameetmehta/docker_report_apptainer devel

  • version: 1.28.1
Latest release: over 1 year ago - 9 downloads - 352 dependencies
am5747/methylation latest

  • version: 1.26.0
Latest release: almost 2 years ago - 10 downloads - 290 dependencies
weishwu/planet 12052022

  • version: 1.24.2
Latest release: almost 2 years ago - 9 downloads - 341 dependencies
apollodorus/polyglot v1

  • version: 1.26.0
Latest release: almost 2 years ago - 10 downloads - 428 dependencies
weishwu/nanomethphase 1.2.0

  • version: 1.16.0
Latest release: over 1 year ago - 31 downloads - 1,274 dependencies
felixschlesinger/assign_types v0.2

  • version: 1.22.1
Latest release: over 1 year ago - 240 downloads - 503 dependencies
ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

  • version: 1.18.1
Latest release: almost 2 years ago - 8 downloads - 406 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 1.28.1
Latest release: about 1 year ago - 60 downloads - 529 dependencies
dsouzd04/himc_zellkonverter 1.6.5

  • version: 1.24.2
Latest release: almost 2 years ago - 25 downloads - 953 dependencies
alkoenig08/harmonyseurat latest

Docker container built on satijalab/seurat with Broad Institute's "Harmony" package installed.

  • version: 1.26.0
Latest release: over 1 year ago - 15 downloads - 931 dependencies
lishuangshuang3/dnbc4dev latest

  • version: 1.26.0
Latest release: over 1 year ago - 73 downloads - 1,043 dependencies
apollodorus/genentech-jp v1

  • version: 1.22.1
Latest release: almost 2 years ago - 22 downloads - 1,947 dependencies
mhettich0years/r-images v1.1.2

  • version: 1.26.0
Latest release: almost 2 years ago - 11 downloads - 334 dependencies
compbiocore/dscov_sct 20221201

  • version: 1.26.0
Latest release: almost 2 years ago - 8 downloads - 1,031 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 1.24.2
Latest release: over 1 year ago - 75 downloads - 512 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 1.26.0
Latest release: over 1 year ago - 15 downloads - 1,562 dependencies
jenfisher7/rstudio_sbae latest

  • version: 1.26.0
Latest release: almost 2 years ago - 8 downloads - 1,604 dependencies
mziemann/meth_analysis latest

Based on BioC release 3.14, this image is designed for analysis of infinium methylation array data

  • version: 1.22.1
Latest release: over 1 year ago - 8 downloads - 1,347 dependencies
dabbleofdevops/r-datascience 4.2.2

  • version: 1.26.0
Latest release: over 1 year ago - 34 downloads - 816 dependencies
crukmi/nas-app latest

  • version: 1.18.1
Latest release: almost 2 years ago - 11 downloads - 701 dependencies
jordanwhitlock/setbp1_manuscript_panda_1.0.1 latest

  • version: 1.26.0
Latest release: over 1 year ago - 35 downloads - 1,720 dependencies
ucigenomics/spatiallibd latest

  • version: 1.26.0
Latest release: almost 2 years ago - 17 downloads - 2,006 dependencies
compbiocore/jupyterhub-docker-images-jh_image 20230524

  • version: 1.26.0
Latest release: over 1 year ago - 11 downloads - 3,115 dependencies
wlc27/dcanr v1

  • version: 1.26.0
Latest release: almost 2 years ago - 10 downloads - 1,681 dependencies
chiajungl/seurat 4.3.0-5.0

  • version: 1.28.1
Latest release: 10 months ago - 17 downloads - 1,249 dependencies
archang/seurat-zellk latest

  • version: 1.26.0
Latest release: over 1 year ago - 9 downloads - 935 dependencies
winuthayanon/seurat 4.3.0

  • version: 1.26.0
Latest release: over 1 year ago - 15 downloads - 2,660 dependencies
pennsive/test latest

  • version: 1.26.0
Latest release: over 1 year ago - 12 downloads - 871 dependencies
fallingstar10/gmadeomicsrocker tiny

  • version: 1.28.1
Latest release: 8 months ago - 51 downloads - 1,224 dependencies
tomasgomes/nextflow_kallisto_sc 0.3

  • version: 1.22.1
Latest release: 11 months ago - 39 downloads - 1,194 dependencies