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Package Usage : cran : irlba

Explore the latest package usage data for irlba in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 363
Total downloads: 2,444,462
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

robertplayer/scidap-qiime2 stable

  • version: 2.3.5.1
Latest release: over 2 years ago - 34 downloads - 527 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 2.3.5.1
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
btrspg/r-env cache

  • version: 2.3.5.1
Latest release: 9 months ago - 342 downloads - 2,231 dependencies
ocdr/ds-apps 1.0.43

  • version: 2.3.5.1
Latest release: about 2 years ago - 3,932 downloads - 3,778 dependencies
koki/urchin_workflow_seurat 20251014

  • version: 2.3.5.1
Latest release: 3 months ago - 367 downloads - 1,471 dependencies
gesiscss/binder-tlbbd-2dspring2018-2dlab-5f03-666af7 7f548fca8d136939e10410662702a657b66a9f9c

  • version: 2.3.1
Latest release: about 6 years ago - 42 downloads - 597 dependencies
koki/tensor-projects-parasite 20220819

  • version: 2.3.5
Latest release: over 3 years ago - 91 downloads - 1,281 dependencies
vanessa/seurat latest

  • version: 2.3.2
Latest release: over 7 years ago - 58 downloads - 475 dependencies
koki/reductdims latest

  • version: 2.3.3
Latest release: about 4 years ago - 160 downloads - 1,081 dependencies
genular/base_image 2.0.0

Base image used in PADNORA - https://github.com/genular/pandora

  • version: 2.3.5.1
Latest release: over 2 years ago - 362 downloads - 3,654 dependencies
mlepetit/ranalysis 3.3.4

  • version: 2.3.3
Latest release: about 3 years ago - 221 downloads - 2,131 dependencies
prismcmap/biomarker 4602f53feb5a

  • version: 2.3.5
Latest release: 10 months ago - 10,896 downloads - 633 dependencies
prismcmap/sushi v0.0.2

  • version: 2.3.3
Latest release: about 4 years ago - 1,518 downloads - 723 dependencies
weizhoujp/rchtc 4.3.0

  • version: 2.3.5.1
Latest release: over 2 years ago - 141 downloads - 738 dependencies
gnwanne/atac latest

  • version: 2.3.5.1
Latest release: about 3 years ago - 35 downloads - 688 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 2.3.5.1
Latest release: almost 3 years ago - 149 downloads - 512 dependencies
tariship/dev_sync_directories latest

  • version: 2.3.5.1
Latest release: over 2 years ago - 396 downloads - 421 dependencies
loukaszagkoslcpuk/lcphaomicscoloc latest

  • version: 2.3.5.1
Latest release: about 2 years ago - 26 downloads - 896 dependencies
crukcibioinformatics/sequencingbase 9.5.4

  • version: 2.3.5.1
Latest release: about 2 months ago - 407 downloads - 1,183 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 2.3.5.1
Latest release: about 3 years ago - 194 downloads - 382 dependencies
prismcmap/base-clue-pseq v0.0.1

  • version: 2.3.3
Latest release: about 4 years ago - 116 downloads - 318 dependencies
cheyne0328/rstudio zxy

  • version: 2.3.5.1
Latest release: over 2 years ago - 24 downloads - 775 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 2.3.2
Latest release: over 7 years ago - 443 downloads - 9,302 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 2.3.5.1
Latest release: over 2 years ago - 155 downloads - 679 dependencies
evolomicsmbbt/rna_seq latest

  • version: 2.3.5.1
Latest release: almost 3 years ago - 162 downloads - 412 dependencies
nathanprovin/cellcom 1.2.2

  • version: 2.3.5.1
Latest release: over 2 years ago - 175 downloads - 596 dependencies
tercen/automated_gating_operator 1.0.3

  • version: 2.3.5.1
Latest release: almost 2 years ago - 207 downloads - 655 dependencies
prismcmap/drc MTS028_PMTS079

  • version: 2.3.5
Latest release: 7 months ago - 6,397 downloads - 651 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 2.3.5.1
Latest release: over 2 years ago - 26 downloads - 1,061 dependencies
afcai2c/r-studio-geo latest

  • version: 2.3.3
Latest release: over 4 years ago - 269 downloads - 2,113 dependencies
rgregstacey/seurat_image 2.1

  • version: 2.3.5.1
Latest release: almost 3 years ago - 113 downloads - 547 dependencies
gesiscss/binder-tlbbd-2dspring2018-2dlab-5f10-b89db5 85cb00a8af28ec9af53e79e947b0f4ff648544a6

  • version: 2.3.1
Latest release: about 6 years ago - 72 downloads - 279 dependencies
payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

  • version: 2.3.5.1
Latest release: about 3 years ago - 81 downloads - 1,943 dependencies
ipbhalle/biobyte latest

  • version: 2.3.5.1
Latest release: over 2 years ago - 28 downloads - 1,311 dependencies
chriswyatt/chopgo latest

  • version: 2.3.5
Latest release: over 3 years ago - 47 downloads - 255 dependencies
qdidiscoveryservices/seurat_cell_annotation latest

  • version: 2.3.5.1
Latest release: about 3 years ago - 75 downloads - 699 dependencies
mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

  • version: 2.3.2
Latest release: over 7 years ago - 43 downloads - 9,414 dependencies
tipsarin/kubeflow-rstudio latest

rstudio for kubeflow

  • version: 2.3.5
Latest release: almost 4 years ago - 62 downloads - 1,312 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 2.3.5.1
Latest release: about 3 years ago - 51 downloads - 897 dependencies
koki/velocytor 20221015

  • version: 2.3.5.1
Latest release: about 3 years ago - 62 downloads - 1,452 dependencies
ghhenry/curio-seeker-pipeline latest

  • version: 2.3.5.1
Latest release: about 3 years ago - 37 downloads - 926 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 2.3.5.1
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 2.3.5.1
Latest release: over 2 years ago - 60 downloads - 2,274 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 2.3.3
Latest release: about 4 years ago - 45 downloads - 2,335 dependencies
prismcmap/normalization APS005_BIAS_CORRECTED

  • version: 2.3.5
Latest release: about 2 months ago - 1,341 downloads - 627 dependencies
koki/bindsc 20220609

  • version: 2.3.5
Latest release: over 3 years ago - 52 downloads - 2,060 dependencies
uabbds/zebrafish_telencephalon_atlas_app 1.0.0

  • version: 2.3.5.1
Latest release: over 2 years ago - 330 downloads - 1,409 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 2.3.3
Latest release: over 2 years ago - 303 downloads - 1,173 dependencies
mshriver01/share_task_seurat latest

  • version: 2.3.5.1
Latest release: over 2 years ago - 394 downloads - 1,637 dependencies
tercen/faust_operator 0.1.4

  • version: 2.3.5
Latest release: almost 2 years ago - 218 downloads - 992 dependencies
biocontainers/bioconductor-phyloseq v1.19.1-2-deb_cv1

  • version: 2.1.2
Latest release: over 7 years ago - 151 downloads - 485 dependencies
mfsentma/atacseq latest

  • version: 2.3.5.1
Latest release: almost 3 years ago - 34 downloads - 852 dependencies
andrewrrelmore/genepi_vscode test

  • version: 2.3.5.1
Latest release: over 2 years ago - 48 downloads - 1,188 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 2.3.5.1
Latest release: almost 3 years ago - 201 downloads - 752 dependencies
chlazaris/dge_env 0.1

  • version: 2.3.5.1
Latest release: over 2 years ago - 17 downloads - 320 dependencies
cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

  • version: 2.3.5.1
Latest release: over 2 years ago - 47 downloads - 1,604 dependencies
alexthiery/archr 3.1

  • version: 2.3.5.1
Latest release: over 2 years ago - 238 downloads - 819 dependencies
fallingstar10/hbsigrocker latest

  • version: 2.3.5.1
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 2.3.5.1
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
denklewer/linseedv2 latest

  • version: 2.3.3
Latest release: almost 3 years ago - 428 downloads - 1,153 dependencies
nilesh0404/st_visualizer m1_0.1.2

  • version: 2.3.5.1
Latest release: over 2 years ago - 18 downloads - 1,422 dependencies
alexthiery/schelper seurat-schelper-0.3.5

  • version: 2.3.3
Latest release: over 2 years ago - 389 downloads - 1,494 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 2.3.3
Latest release: about 3 years ago - 94 downloads - 2,142 dependencies
chiajungl/scrna-extra 4.4.0-4.4

  • version: 2.3.5.1
Latest release: over 1 year ago - 920 downloads - 1,350 dependencies
qdidiscoveryservices/flowr 1.0

  • version: 2.3.5
Latest release: over 3 years ago - 146 downloads - 1,476 dependencies
luisas/rde latest

  • version: 2.3.3
Latest release: about 5 years ago - 66 downloads - 549 dependencies
genular/pandora 2.0.0

PANDORA - https://pandora.atomic-lab.org

  • version: 2.3.5.1
Latest release: over 2 years ago - 1,976 downloads - 3,716 dependencies
uvarc/rstudio tam5xe

  • version: 2.3.5.1
Latest release: over 2 years ago - 37 downloads - 1,062 dependencies
atttilacs/dsp_geomxtools latest

  • version: 2.3.5.1
Latest release: about 3 years ago - 114 downloads - 871 dependencies
felipexgonzalez/am-2023-amd64 latest

  • version: 2.3.5.1
Latest release: over 2 years ago - 81 downloads - 439 dependencies
natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

  • version: 2.3.5.1
Latest release: over 2 years ago - 273 downloads - 1,392 dependencies
jafoltz/sc_python 8

  • version: 2.3.5.1
Latest release: almost 3 years ago - 122 downloads - 438 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 2.3.5.1
Latest release: about 3 years ago - 33 downloads - 598 dependencies
andrewatmp/qiime_unzip latest

  • version: 2.3.5.1
Latest release: over 2 years ago - 151 downloads - 598 dependencies
prismcmap/qc EPS005

  • version: 2.3.5
Latest release: 6 months ago - 739 downloads - 245 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 2.3.5.1
Latest release: over 2 years ago - 293 downloads - 529 dependencies
lishuangshuang3/dnbc4dev 2.0.3

  • version: 2.3.5
Latest release: over 2 years ago - 124 downloads - 1,043 dependencies
luisas/r_sc.simg latest

  • version: 2.3.3
Latest release: about 5 years ago - 21 downloads - 260 dependencies
chriswyatt/bioseqio_gffread latest

  • version: 2.3.5.1
Latest release: over 2 years ago - 61 downloads - 240 dependencies
ethill/qiime2 latest

docker container for qiime2

  • version: 2.3.5.1
Latest release: almost 3 years ago - 20 downloads - 1,935 dependencies
dpraveen511/spot spot_ec2

  • version: 2.3.5.1
Latest release: over 2 years ago - 220 downloads - 287 dependencies
stefanucciluca/tregopathies latest

  • version: 2.3.5.1
Latest release: over 2 years ago - 91 downloads - 488 dependencies
prismcmap/lfc 0.0.1

  • version: 2.3.5
Latest release: over 2 years ago - 1,066 downloads - 245 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 2.3.5
Latest release: 8 months ago - 2,648 downloads - 757 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 2.3.3
Latest release: almost 5 years ago - 13 downloads - 435 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 2.3.5.1
Latest release: over 1 year ago - 1,193 downloads - 6,961 dependencies
kaizhang/scatac-bench 0.2.1

  • version: 2.3.5.1
Latest release: over 2 years ago - 440 downloads - 588 dependencies
prismcmap/batch_correction APS005

  • version: 2.3.5
Latest release: 4 months ago - 956 downloads - 245 dependencies
gyusikhwang/tgs v1

  • version: 2.3.5
Latest release: almost 3 years ago - 58 downloads - 1,095 dependencies
alexsickler/open-pedcan latest

  • version: 2.3.3
Latest release: almost 3 years ago - 219 downloads - 864 dependencies
koki/guidedpls sha-a0875b7

  • version: 2.3.5.1
Latest release: almost 3 years ago - 101 downloads - 170 dependencies
granatumx/gbox-cellid-sctype 1.0.2

  • version: 2.3.5.1
Latest release: over 2 years ago - 91 downloads - 201 dependencies
emersonchao/dsc180b latest

  • version: 2.3.5.1
Latest release: almost 3 years ago - 62 downloads - 2,266 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 2.3.3
Latest release: about 5 years ago - 10 downloads - 431 dependencies
prismcmap/compound_summary APS005

  • version: 2.3.5
Latest release: 4 months ago - 675 downloads - 627 dependencies
tercen/normalise_cytof_operator 0.2.3

  • version: 2.3.5.1
Latest release: almost 2 years ago - 53 downloads - 655 dependencies
mshriver01/share_task_archr latest

  • version: 2.3.5.1
Latest release: over 2 years ago - 91 downloads - 1,364 dependencies
bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

  • version: 2.3.3
Latest release: over 1 year ago - 68 downloads - 421 dependencies
mknudson/share_task_cell_annotation mei-cell-annotation

  • version: 2.3.5.1
Latest release: over 2 years ago - 158 downloads - 316 dependencies
jordannelsonepam/custom latest

  • version: 2.3.1
Latest release: about 3 years ago - 21 downloads - 203 dependencies