Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : BiocVersion

Explore the latest package usage data for BiocVersion in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 752
Total downloads: 3,238,035

More details on packages.ecosyste.ms - JSON

rocker/geospatial 4.3.2

Docker-based Geospatial toolkit for R, built on versioned Rocker images

  • version: 3.18.1, 3.17.1
Latest release: 11 months ago - 744,200 downloads - 1,336 dependencies
bioconductor/bioconductor_docker devel-R-devel

Bioconductor Docker Images

  • version: 3.17.1, 3.19.1
Latest release: 11 months ago - 1,124,807 downloads - 1,397 dependencies
veupathdb/rserve 7

  • version: 3.16.0
Latest release: 10 months ago - 624,940 downloads - 550 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 3.16.0
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
rocker/binder 4.3.2

Adds binder to rocker/tidyverse, providing JupyterHub access on rocker containers

  • version: 3.17.1, 3.18.1
Latest release: 11 months ago - 95,871 downloads - 2,239 dependencies
dhspence/docker-basespace_chromoseq latest

  • version: 3.9.0
Latest release: about 5 years ago - 38,314 downloads - 559 dependencies
rocker/ml-verse 4.3.2

  • version: 3.17.1, 3.18.1
Latest release: 9 months ago - 34,310 downloads - 1,414 dependencies
nfcore/rnafusion fusioninspector_2.8.0dev

A Docker image for the nf-core/rnafusion pipeline.

  • version: 3.10.1
Latest release: about 2 years ago - 24,036 downloads - 1,302 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 3.10.1
Latest release: over 2 years ago - 19,678 downloads - 1,294 dependencies
vanallenlab/sv-pipeline filter_gt_029fa3b

  • version: 3.14.0
Latest release: about 1 year ago - 22,757 downloads - 1,231 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 3.14.0
Latest release: almost 3 years ago - 3,660 downloads - 1,218 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 3.12.0
Latest release: over 3 years ago - 3,040 downloads - 1,044 dependencies
patroonorg/patroondeps latest

  • version: 3.16.0
Latest release: over 1 year ago - 2,754 downloads - 1,677 dependencies
broadinstitute/terra-jupyter-gatk 8444561

  • version: 3.10.1
Latest release: over 4 years ago - 2,239 downloads - 3,913 dependencies
dceoy/r-tidyverse latest

R with tidyverse

  • version: 3.10.1
Latest release: over 1 year ago - 1,242 downloads - 615 dependencies
biocontainers/oncocnv v7.0_cv2

  • version: 3.10.1
Latest release: almost 2 years ago - 12,111 downloads - 307 dependencies
hoonbiolab/cellranger v1.0

  • version: 3.10.1
Latest release: almost 3 years ago - 919 downloads - 682 dependencies
prismcmap/depmap_versions dd55695d58fb

  • version: 3.12.0
Latest release: 9 months ago - 1,452 downloads - 633 dependencies
seglh/exomedepth f4716ad

  • version: 3.15.2
Latest release: 10 months ago - 928 downloads - 548 dependencies
prismcmap/drc-module robust_DRC

  • version: 3.12.0
Latest release: over 1 year ago - 539 downloads - 647 dependencies
veitveit/vsclust release-1.2.1

For more details, see https://bitbucket.org/veitveit/vsclust

  • version: 3.16.0
Latest release: over 1 year ago - 445 downloads - 1,148 dependencies
qdidiscoveryservices/limma-voom 4.2.0

  • version: 3.15.2
Latest release: over 2 years ago - 1,002 downloads - 1,382 dependencies
recetox/aplcms latest

  • version: 3.11.1
Latest release: over 3 years ago - 386 downloads - 458 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 3.14.0
Latest release: 11 months ago - 2,811 downloads - 1,464 dependencies
prismcmap/norm-module 26be7aa8ab48

  • version: 3.12.0
Latest release: almost 2 years ago - 380 downloads - 633 dependencies
almahmoud/bioconductor_docker RELEASE_3_17

  • version: 3.17.1
Latest release: over 1 year ago - 359 downloads - 1,206 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 3.11.1
Latest release: almost 3 years ago - 302 downloads - 1,375 dependencies
nuest/rockerverse-paper latest

  • version: 3.10.1
Latest release: almost 4 years ago - 286 downloads - 1,133 dependencies
veitveit/complexbrowser release-1.6

  • version: 3.18.1, 3.16.0
Latest release: 10 months ago - 316 downloads - 1,296 dependencies
austinhpatton123/r-4.2.2_uniprot.ws 2.38.0

  • version: 3.16.0
Latest release: almost 2 years ago - 279 downloads - 381 dependencies
dhspence/docker-dss latest

  • version: 3.10.1
Latest release: about 4 years ago - 367 downloads - 1,127 dependencies
hoonbiolab/align_dna v1.3

  • version: 3.10.1
Latest release: about 3 years ago - 275 downloads - 794 dependencies
tercen/flowsom 0.2.3

  • version: 3.12.0
Latest release: about 3 years ago - 277 downloads - 805 dependencies
veitveit/polystest release-1.3.4

  • version: 3.17.1
Latest release: over 1 year ago - 245 downloads - 838 dependencies
tercen/runtime-flowsuite 3.15-4

  • version: 3.15.2
Latest release: almost 2 years ago - 353 downloads - 1,641 dependencies
koki/sctensor-experiments 20220208

  • version: 3.14.0
Latest release: over 2 years ago - 206 downloads - 2,071 dependencies
evolbioinfo/deseq2 v1.28.1

  • version: 3.11.1
Latest release: almost 4 years ago - 206 downloads - 452 dependencies
intelliseqngs/task_bam-wisecondorx 1.0.1-prodia

  • version: 3.10.1
Latest release: almost 2 years ago - 203 downloads - 471 dependencies
gesiscss/binder-benmarwick-2drrtools-9a1629 3f830bce55e733f17e599a632a4e930ee82b8edb

  • version: 3.10.1
Latest release: about 3 years ago - 200 downloads - 1,122 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 3.13.1
Latest release: over 2 years ago - 354 downloads - 1,716 dependencies
koki/biocdev 20230818

  • version: 3.18.0
Latest release: about 1 year ago - 201 downloads - 1,504 dependencies
anand7899/rmarkdown latest

  • version: 3.16.0
Latest release: almost 2 years ago - 262 downloads - 766 dependencies
prismcmap/sushi develop

  • version: 3.12.0
Latest release: 8 months ago - 221 downloads - 723 dependencies
gesiscss/binder-wlandau-2ddrake-2dexamples-d960ed 73134a125630b10d47c10b5c038ba7d3af6fec16

  • version: 3.10.1
Latest release: over 3 years ago - 180 downloads - 1,264 dependencies
inseefrlab/travail-collaboratif 0.1.0

  • version: 3.16.0
Latest release: almost 2 years ago - 176 downloads - 1,119 dependencies
hoonbiolab/hmftools v1.1

  • version: 3.13.1
Latest release: almost 3 years ago - 1,211 downloads - 693 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 3.14.0
Latest release: almost 2 years ago - 172 downloads - 962 dependencies
austinhpatton123/cogeqc-1.2.0_r-4.2.2 latest

  • version: 3.16.0
Latest release: almost 2 years ago - 169 downloads - 451 dependencies
nuest/reproducible-research-at-giscience latest

  • version: 3.10.1
Latest release: about 3 years ago - 139 downloads - 1,132 dependencies
hoonbiolab/hl_base v1.2

  • version: 3.10.1
Latest release: almost 2 years ago - 136 downloads - 873 dependencies
chgyi/metaware_rna_denovo latest

  • version: 3.8.0
Latest release: over 5 years ago - 132 downloads - 2,095 dependencies
inseefrlab/onyxia-r ds-r4.1.2-gpu-2022.09.08

A R environment with a collection of standard data science packages.

  • version: 3.15.2
Latest release: about 2 years ago - 120 downloads - 2,202 dependencies
recetox/xmsannotator latest

  • version: 3.11.1
Latest release: over 3 years ago - 113 downloads - 448 dependencies
dhspence/docker-hiccompare latest

  • version: 3.10.1
Latest release: over 3 years ago - 113 downloads - 1,271 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 3.14.0
Latest release: almost 3 years ago - 111 downloads - 2,087 dependencies
atttilacs/dsp_geomxtools latest

  • version: 3.14.0
Latest release: almost 2 years ago - 114 downloads - 871 dependencies
koki/reductdims latest

  • version: 3.14.0
Latest release: almost 3 years ago - 106 downloads - 1,081 dependencies
atttilacs/seurat_big latest

  • version: 3.14.0
Latest release: almost 2 years ago - 495 downloads - 997 dependencies
jafoltz/scclassify latest

  • version: 3.14.0
Latest release: almost 2 years ago - 90 downloads - 1,079 dependencies
crukmi/mesa main

  • version: 3.16.0
Latest release: almost 2 years ago - 91 downloads - 1,326 dependencies
testalabgh/downstream signac-1.4.0

  • version: 3.14.0
Latest release: over 1 year ago - 485 downloads - 3,517 dependencies
atttilacs/dsp_giotto latest

  • version: 3.14.0
Latest release: almost 2 years ago - 101 downloads - 1,154 dependencies
veitveit/isoprot latest

  • version: 3.8.0
Latest release: over 5 years ago - 86 downloads - 2,182 dependencies
veitveit/viqor latest

  • version: 3.16.0
Latest release: almost 3 years ago - 88 downloads - 1,141 dependencies
hoonbiolab/cnvkit v1.1

  • version: 3.10.1
Latest release: about 3 years ago - 83 downloads - 817 dependencies
gene110/reportnipt550 latest

  • version: 3.10.1
Latest release: over 3 years ago - 88 downloads - 577 dependencies
mlepetit/ranalysis 3.3.4

  • version: 3.13.1
Latest release: almost 2 years ago - 79 downloads - 2,131 dependencies
tercen/flowsuite 0.0.4

  • version: 3.12.0
Latest release: over 2 years ago - 99 downloads - 1,512 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 3.16.0
Latest release: almost 2 years ago - 75 downloads - 382 dependencies
hdsu/etbii2023 latest

  • version: 3.14.0
Latest release: over 1 year ago - 73 downloads - 358 dependencies
koki/tensor-project-parasite 20211013

  • version: 3.13.1
Latest release: almost 3 years ago - 77 downloads - 206 dependencies
gesiscss/binder-ngs-2ddocs-2d2020-2dggg-2d298-2dfirst-2dday-2drnaseq-c342e4 dca58a4e2661655c1469b51f54f6baafdd836726

  • version: 3.10.1
Latest release: over 4 years ago - 69 downloads - 1,498 dependencies
gesiscss/binder-wlandau-2dlearndrake-4eaf31 37504de3434ab3b0fedf8680a95efeeb605bef4d

  • version: 3.10.1
Latest release: over 4 years ago - 72 downloads - 447 dependencies
chriswyatt/goatee_biomart latest

  • version: 3.14.0
Latest release: almost 3 years ago - 95 downloads - 229 dependencies
qdidiscoveryservices/quantiseqr v1

  • version: 3.15.0
Latest release: over 2 years ago - 65 downloads - 1,201 dependencies
koki/rstudio_mesh latest

  • version: 3.15.0
Latest release: almost 3 years ago - 67 downloads - 1,389 dependencies
tercen/flowsom_operator 1.6.0

  • version: 3.15.2
Latest release: over 1 year ago - 105 downloads - 1,563 dependencies
pego/dowhy-examples-notebooks-deps latest

  • version: 3.15.2
Latest release: about 2 years ago - 64 downloads - 797 dependencies
intelliseqngs/task_bam-exon-depth 1.0.4

  • version: 3.10.1
Latest release: over 2 years ago - 67 downloads - 547 dependencies
koki/annotationhub 20210323

  • version: 3.12.0
Latest release: over 3 years ago - 73 downloads - 1,250 dependencies
qdidiscoveryservices/ssgsea 1.0

  • version: 3.16.0
Latest release: almost 2 years ago - 65 downloads - 665 dependencies
sktrinh12/romiq-ctnr latest

r instance for testing

  • version: 3.10.1
Latest release: over 3 years ago - 59 downloads - 1,195 dependencies
koki/tensor-project-plasmids 20211014

  • version: 3.13.1
Latest release: almost 3 years ago - 54 downloads - 1,169 dependencies
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520

  • version: 3.10.1
Latest release: over 4 years ago - 55 downloads - 1,313 dependencies
tipsarin/rstudio 4.1.3viraltrack

  • version: 3.14.0
Latest release: over 1 year ago - 54 downloads - 981 dependencies
lorentzb/gene8940_r 1.0

  • version: 3.16.0
Latest release: almost 2 years ago - 55 downloads - 926 dependencies
qdidiscoveryservices/bam_to_10x_counts_pandoc latest

  • version: 3.14.0
Latest release: over 1 year ago - 51 downloads - 964 dependencies
doejgi/trinityrnaseq-wdl 2.11.0b

  • version: 3.10.1, 3.16.0
Latest release: over 1 year ago - 331 downloads - 980 dependencies
rocker/vscode latest

  • version: 3.14.0
Latest release: almost 3 years ago - 924 downloads - 3,465 dependencies