Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : limma

Explore the latest package usage data for limma in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 409
Total downloads: 2,289,301

More details on packages.ecosyste.ms - JSON

nfcore/rnaseq dev

Docker Image for nf-core/rnaseq project.

  • version: 3.44.1
Latest release: about 4 years ago - 659,186 downloads - 208 dependencies
veupathdb/rserve 7

  • version: 3.54.2
Latest release: 12 months ago - 624,940 downloads - 550 dependencies
ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 3.34.9
Latest release: 11 months ago - 124,831 downloads - 1,028 dependencies
broadinstitute/gtex_eqtl V10

GTEx Consortium: eQTL pipeline based on FastQTL

  • version: 3.34.9
Latest release: over 2 years ago - 102,887 downloads - 846 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 3.54.0
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 3.34.9
Latest release: almost 1 year ago - 92,270 downloads - 1,220 dependencies
ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 3.34.9
Latest release: about 1 year ago - 57,229 downloads - 916 dependencies
nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

  • version: 3.42.0
Latest release: over 2 years ago - 54,429 downloads - 352 dependencies
nfcore/chipseq dev

A docker image for nf-core/chipseq

  • version: 3.44.1
Latest release: over 3 years ago - 50,176 downloads - 309 dependencies
nfcore/smrnaseq dev

A Docker container for the nf-core/smrnaseq pipeline.

  • version: 3.40.2
Latest release: over 3 years ago - 38,754 downloads - 320 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 3.56.2
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 3.42.2
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 3.52.2
Latest release: over 2 years ago - 13,673 downloads - 11,684 dependencies
ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 3.34.9
Latest release: 11 months ago - 14,674 downloads - 894 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 3.52.1
Latest release: over 2 years ago - 6,685 downloads - 12,259 dependencies
kbase/kbase sdkbase.latest

  • version: 3.18.13
Latest release: over 6 years ago - 4,258 downloads - 2,934 dependencies
ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 3.34.9
Latest release: 11 months ago - 4,929 downloads - 884 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 3.46.0
Latest release: almost 4 years ago - 3,040 downloads - 1,044 dependencies
ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 3.34.9
Latest release: 11 months ago - 3,448 downloads - 893 dependencies
patroonorg/patroondeps latest

  • version: 3.54.2
Latest release: over 1 year ago - 2,754 downloads - 1,677 dependencies
dhspence/docker-biscuit latest

  • version: 3.36.5
Latest release: almost 6 years ago - 1,935 downloads - 807 dependencies
ccdlstaging/dr_compendia 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 3.34.9
Latest release: 11 months ago - 2,332 downloads - 877 dependencies
biocontainers/ipo develop

A Tool for automated Optimization of XCMS Parameters

  • version: 3.34.5
Latest release: over 6 years ago - 957 downloads - 366 dependencies
nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

  • version: 3.46.0
Latest release: almost 4 years ago - 9,677 downloads - 340 dependencies
nfcore/proteomicslfq dev

A Docker Container for label free quantification for proteomics data.

  • version: 3.46.0
Latest release: over 2 years ago - 5,384 downloads - 1,124 dependencies
nfcore/diaproteomics dev

A Docker container for nf-core/diaproteomics

  • version: 3.44.1
Latest release: over 3 years ago - 5,499 downloads - 488 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 3.38.3, 3.36.5
Latest release: almost 6 years ago - 762 downloads - 9,716 dependencies
veitveit/isolabeledprotocol latest

Discontinued, see github.com/ProtProtocols/IsoProt for updates

  • version: 3.34.9
Latest release: about 6 years ago - 715 downloads - 2,000 dependencies
prismcmap/depmap_versions dd55695d58fb

  • version: 3.46.0
Latest release: 11 months ago - 1,452 downloads - 633 dependencies
dhspence/docker-homer latest

docker with chip-seq tool homer

  • version: 3.36.5
Latest release: almost 6 years ago - 702 downloads - 606 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 3.36.5
Latest release: almost 6 years ago - 1,158 downloads - 616 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: 3.36.5
Latest release: almost 6 years ago - 1,141 downloads - 413 dependencies
gene110/nipt_report latest

  • version: 3.34.9
Latest release: over 3 years ago - 785 downloads - 676 dependencies
kbase/kbase_base latest

KBase Base Image containing Core services and runtime

  • version: 3.18.13
Latest release: about 8 years ago - 510 downloads - 3,106 dependencies
kbase/sdkbase latest

  • version: 3.18.13
Latest release: almost 8 years ago - 476 downloads - 2,934 dependencies
prismcmap/drc-module robust_DRC

  • version: 3.46.0
Latest release: over 1 year ago - 539 downloads - 647 dependencies
veitveit/vsclust release-1.2.1

For more details, see https://bitbucket.org/veitveit/vsclust

  • version: 3.54.2
Latest release: over 1 year ago - 445 downloads - 1,148 dependencies
dhspence/docker-sicer latest

  • version: 3.36.2
Latest release: over 5 years ago - 765 downloads - 1,147 dependencies
qdidiscoveryservices/limma-voom 4.2.0

  • version: 3.52.0
Latest release: over 2 years ago - 1,002 downloads - 1,382 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 3.50.3
Latest release: about 1 year ago - 2,811 downloads - 1,464 dependencies
prismcmap/norm-module 26be7aa8ab48

  • version: 3.46.0
Latest release: almost 2 years ago - 380 downloads - 633 dependencies
dhspence/docker-basestation latest

  • version: 3.36.2
Latest release: over 5 years ago - 308 downloads - 1,132 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 3.44.1
Latest release: about 3 years ago - 302 downloads - 1,375 dependencies
veitveit/complexbrowser release-1.6

  • version: 3.58.1, 3.54.0
Latest release: 12 months ago - 316 downloads - 1,296 dependencies
mirekphd/ml-cpu-r35-jnb devel_2b2752c

  • version: 3.36.1
Latest release: over 6 years ago - 271 downloads - 9,222 dependencies
dhspence/docker-dss latest

  • version: 3.42.2
Latest release: over 4 years ago - 367 downloads - 1,127 dependencies
koki/pagoda latest

  • version: 3.32.5
Latest release: over 7 years ago - 256 downloads - 390 dependencies
veitveit/polystest release-1.3.4

  • version: 3.56.1
Latest release: over 1 year ago - 245 downloads - 838 dependencies
tercen/runtime-flowsuite 3.15-4

  • version: 3.52.4
Latest release: about 2 years ago - 353 downloads - 1,641 dependencies
biocontainers/bioconductor-limma v3.30.8dfsg-1-deb_cv1

  • version: 3.30.8
Latest release: over 6 years ago - 521 downloads - 388 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 3.48.3
Latest release: almost 3 years ago - 354 downloads - 1,716 dependencies
recetox/ramclustr 1.1.0-recetox0

  • version: 3.44.3
Latest release: about 4 years ago - 191 downloads - 593 dependencies
prismcmap/sushi develop

  • version: 3.46.0
Latest release: 10 months ago - 221 downloads - 723 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 3.50.3
Latest release: almost 2 years ago - 172 downloads - 962 dependencies
chgyi/bio 3.5.1

  • version: 3.36.3
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
biocontainers/bioconductor-edger v3.14.0dfsg-1-deb_cv1

  • version: 3.30.8
Latest release: over 6 years ago - 155 downloads - 390 dependencies
biocontainers/bioconductor-metagenomeseq v1.16.0-2-deb_cv1

  • version: 3.30.8
Latest release: over 6 years ago - 138 downloads - 417 dependencies
chgyi/metaware_rna_denovo latest

  • version: 3.38.3
Latest release: over 5 years ago - 132 downloads - 2,095 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 3.36.2
Latest release: over 6 years ago - 134 downloads - 9,302 dependencies
dhspence/docker-manta 1.5.0

  • version: 3.36.2
Latest release: almost 6 years ago - 126 downloads - 1,191 dependencies
dhspence/docker-hiccompare latest

  • version: 3.42.2
Latest release: over 3 years ago - 113 downloads - 1,271 dependencies
atttilacs/dsp_geomxtools latest

  • version: 3.50.3
Latest release: about 2 years ago - 114 downloads - 871 dependencies
kcapd/wings-genomics latest

WINGS workflow system with software for genomics operations.

  • version: 3.30.13
Latest release: about 4 years ago - 103 downloads - 1,468 dependencies
atttilacs/seurat_big latest

  • version: 3.50.3
Latest release: almost 2 years ago - 495 downloads - 997 dependencies
mirekphd/ml-cpu-r35-rdp 20180918

  • version: 3.36.3
Latest release: about 6 years ago - 93 downloads - 9,486 dependencies
jafoltz/scclassify latest

  • version: 3.50.3
Latest release: almost 2 years ago - 90 downloads - 1,079 dependencies
crukmi/mesa main

  • version: 3.53.10
Latest release: about 2 years ago - 91 downloads - 1,326 dependencies
testalabgh/downstream signac-1.4.0

  • version: 3.50.3
Latest release: over 1 year ago - 485 downloads - 3,517 dependencies
atttilacs/dsp_giotto latest

  • version: 3.50.3
Latest release: about 2 years ago - 101 downloads - 1,154 dependencies
veitveit/isoprot latest

  • version: 3.38.3
Latest release: over 5 years ago - 86 downloads - 2,182 dependencies
gene110/reportnipt550 latest

  • version: 3.42.2
Latest release: over 3 years ago - 88 downloads - 577 dependencies
veitveit/compomicsworkflow dev

  • version: 3.46.0
Latest release: almost 4 years ago - 80 downloads - 537 dependencies
mlepetit/ranalysis 3.3.4

  • version: 3.48.3
Latest release: almost 2 years ago - 79 downloads - 2,131 dependencies
tercen/flowsuite 0.0.4

  • version: 3.46.0
Latest release: over 2 years ago - 99 downloads - 1,512 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 3.54.0
Latest release: almost 2 years ago - 75 downloads - 382 dependencies
koki/tensor-project-parasite 20211013

  • version: 3.48.3
Latest release: about 3 years ago - 77 downloads - 206 dependencies
gesiscss/binder-ngs-2ddocs-2d2020-2dggg-2d298-2dfirst-2dday-2drnaseq-c342e4 dca58a4e2661655c1469b51f54f6baafdd836726

  • version: 3.42.0
Latest release: almost 5 years ago - 69 downloads - 1,498 dependencies
qdidiscoveryservices/quantiseqr v1

  • version: 3.51.5
Latest release: over 2 years ago - 65 downloads - 1,201 dependencies
ccdlstaging/dr_common_tests 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 3.34.9
Latest release: 11 months ago - 710 downloads - 784 dependencies
tercen/flowsom_operator 1.6.0

  • version: 3.52.0
Latest release: over 1 year ago - 105 downloads - 1,563 dependencies
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520

  • version: 3.42.0
Latest release: almost 5 years ago - 55 downloads - 1,313 dependencies
dhspence/docker-vep 93

  • version: 3.36.2
Latest release: over 5 years ago - 53 downloads - 1,191 dependencies
mirekphd/ml-cpu-r35-guac devel_6f33d1e

  • version: 3.36.1
Latest release: over 6 years ago - 54 downloads - 8,551 dependencies
qdidiscoveryservices/bam_to_10x_counts_pandoc latest

  • version: 3.50.3
Latest release: almost 2 years ago - 51 downloads - 964 dependencies
doejgi/trinityrnaseq-wdl 2.11.0b

  • version: 3.42.2, 3.54.0
Latest release: over 1 year ago - 331 downloads - 980 dependencies