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Package Usage : cran : limma

Explore the latest package usage data for limma in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 409
Total downloads: 2,289,301
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

ccdlstaging/dr_illumina 1.45.8

  • version: 3.34.9
Latest release: over 2 years ago - 6,466 downloads - 893 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 3.50.3
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
btrspg/r-env cache

  • version: 3.58.1
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
koki/urchin_workflow_seurat 20251014

  • version: 3.54.2
Latest release: 3 months ago - 367 downloads - 1,471 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 3.46.0
Latest release: almost 5 years ago - 3,042 downloads - 1,044 dependencies
veitveit/coexpresso 0d86fb51b4b4cdc9a21ad900ae0f30e1eb9e828f

  • version: 3.50.1
Latest release: 5 months ago - 449 downloads - 1,733 dependencies
koki/tensor-projects-parasite 20220819

  • version: 3.52.2
Latest release: over 3 years ago - 91 downloads - 1,281 dependencies
tercen/opencyto_operator 0.2.0

  • version: 3.46.0
Latest release: almost 4 years ago - 71 downloads - 1,514 dependencies
mlepetit/ranalysis 3.3.4

  • version: 3.48.3
Latest release: about 3 years ago - 221 downloads - 2,131 dependencies
veitveit/compomicsworkflow dev

  • version: 3.46.0
Latest release: about 5 years ago - 99 downloads - 537 dependencies
prismcmap/biomarker 4602f53feb5a

  • version: 3.46.0
Latest release: 11 months ago - 10,896 downloads - 633 dependencies
prismcmap/sushi v0.0.2

  • version: 3.46.0
Latest release: about 4 years ago - 1,518 downloads - 723 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 3.52.4
Latest release: almost 3 years ago - 149 downloads - 512 dependencies
tariship/dev_sync_directories latest

  • version: 3.54.2
Latest release: over 2 years ago - 396 downloads - 421 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: 3.34.9
Latest release: over 2 years ago - 95,753 downloads - 1,220 dependencies
crukcibioinformatics/sequencingbase 9.5.4

  • version: 3.62.2
Latest release: about 2 months ago - 407 downloads - 1,183 dependencies
almahmoud/workshops-auto-spectratutorials latest

  • version: 3.53.2
Latest release: over 3 years ago - 89 downloads - 2,003 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 3.54.0
Latest release: about 3 years ago - 195 downloads - 382 dependencies
prismcmap/base-clue-pseq v0.0.1

  • version: 3.46.0
Latest release: about 4 years ago - 116 downloads - 318 dependencies
cheyne0328/rstudio zxy

  • version: 3.56.1
Latest release: over 2 years ago - 24 downloads - 775 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 3.36.2
Latest release: over 7 years ago - 443 downloads - 9,302 dependencies
koki/tensor-project-parasite 20211013

  • version: 3.48.3
Latest release: over 4 years ago - 107 downloads - 206 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 3.56.1
Latest release: over 2 years ago - 155 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 3.54.1
Latest release: almost 3 years ago - 98 downloads - 290 dependencies
evolomicsmbbt/rna_seq latest

  • version: 3.50.3
Latest release: about 3 years ago - 162 downloads - 412 dependencies
jpdodson/dsrna_docker latest

  • version: 3.54.0
Latest release: almost 3 years ago - 79 downloads - 208 dependencies
gesiscss/binder-ngs-2ddocs-2d2020-2dggg-2d298-2dfirst-2dday-2drnaseq-c342e4 dca58a4e2661655c1469b51f54f6baafdd836726

  • version: 3.42.0
Latest release: about 6 years ago - 138 downloads - 1,498 dependencies
nathanprovin/cellcom 1.2.2

  • version: 3.56.2
Latest release: over 2 years ago - 189 downloads - 596 dependencies
tercen/automated_gating_operator 1.0.3

  • version: 3.52.4
Latest release: almost 2 years ago - 207 downloads - 655 dependencies
tercen/tracksom_operator 0.1.5

  • version: 3.46.0
Latest release: almost 3 years ago - 144 downloads - 760 dependencies
prismcmap/drc MTS028_PMTS079

  • version: 3.46.0
Latest release: 7 months ago - 6,397 downloads - 651 dependencies
zymoresearch/bio_resource_builder v1.0

  • version: 3.54.0
Latest release: over 2 years ago - 22 downloads - 335 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 3.46.0
Latest release: over 2 years ago - 26 downloads - 1,061 dependencies
ipbhalle/biobyte latest

  • version: 3.54.2
Latest release: over 2 years ago - 28 downloads - 1,311 dependencies
evolbioinfo/r-sra v3.6.1

  • version: 3.40.2
Latest release: over 6 years ago - 50 downloads - 466 dependencies
qdidiscoveryservices/glimma 4.2.0

  • version: 3.52.0
Latest release: over 3 years ago - 81 downloads - 1,371 dependencies
chriswyatt/svm1071deseq2limma latest

  • version: 3.50.0
Latest release: about 4 years ago - 61 downloads - 327 dependencies
recetox/xmsanalyzer 2.0.6.1-recetox1

  • version: 3.44.3
Latest release: about 5 years ago - 90 downloads - 588 dependencies
mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

  • version: 3.36.1
Latest release: over 7 years ago - 43 downloads - 9,414 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 3.54.0
Latest release: about 3 years ago - 51 downloads - 897 dependencies
koki/velocytor 20221015

  • version: 3.52.4
Latest release: over 3 years ago - 62 downloads - 1,452 dependencies
broadcptac/panoply_so_nmf_report 1_3

  • version: 3.42.2
Latest release: over 2 years ago - 37 downloads - 725 dependencies
haileyzhang/phospho-analyst v1.0.2

  • version: 3.54.2
Latest release: almost 2 years ago - 226 downloads - 796 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 3.50.3
Latest release: about 3 years ago - 215 downloads - 962 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 3.55.2
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 3.50.3
Latest release: over 2 years ago - 60 downloads - 2,274 dependencies
omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 3.56.2
Latest release: 2 months ago - 1,916 downloads - 1,420 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 3.51.0
Latest release: about 4 years ago - 45 downloads - 2,335 dependencies
chgyi/bio 3.5.1

  • version: 3.36.3
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
tercen/compare_means_operator 0.1.9

  • version: 3.52.0
Latest release: over 2 years ago - 196 downloads - 559 dependencies
biocontainers/bioconductor-edger v3.14.0dfsg-1-deb_cv1

  • version: 3.30.8
Latest release: over 7 years ago - 168 downloads - 390 dependencies
prismcmap/normalization APS005_BIAS_CORRECTED

  • version: 3.46.0
Latest release: 2 months ago - 1,341 downloads - 627 dependencies
koki/bindsc 20220609

  • version: 3.52.1
Latest release: over 3 years ago - 52 downloads - 2,060 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 3.54.2
Latest release: about 2 years ago - 392 downloads - 1,496 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 3.46.0
Latest release: over 2 years ago - 303 downloads - 1,173 dependencies
tercen/diffcyt_operator 0.4.4

  • version: 3.52.0
Latest release: almost 2 years ago - 135 downloads - 1,563 dependencies
biocontainers/bioconductor-metagenomeseq v1.16.0-2-deb_cv1

  • version: 3.30.8
Latest release: over 7 years ago - 148 downloads - 417 dependencies
mfsentma/atacseq latest

  • version: 3.50.3
Latest release: almost 3 years ago - 34 downloads - 852 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 3.54.2
Latest release: almost 3 years ago - 687 downloads - 1,367 dependencies
chgyi/metaware_rna_denovo latest

  • version: 3.38.3
Latest release: almost 7 years ago - 360 downloads - 2,095 dependencies
cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

  • version: 3.57.1
Latest release: over 2 years ago - 47 downloads - 1,604 dependencies
cjchen/gxuclass 1.0

  • version: 3.56.2
Latest release: over 2 years ago - 19 downloads - 657 dependencies
cjchen/tbtoolszone 2.0

  • version: 3.50.3
Latest release: almost 3 years ago - 141 downloads - 789 dependencies
fallingstar10/hbsigrocker latest

  • version: 3.56.2
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 3.54.0
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
dhspence/docker-manta 1.5.0

  • version: 3.36.2
Latest release: about 7 years ago - 233 downloads - 1,191 dependencies
denklewer/linseedv2 latest

  • version: 3.48.3
Latest release: almost 3 years ago - 428 downloads - 1,153 dependencies
alexthiery/schelper seurat-schelper-0.3.5

  • version: 3.46.0
Latest release: over 2 years ago - 389 downloads - 1,494 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 3.48.3
Latest release: about 3 years ago - 94 downloads - 2,142 dependencies
chiajungl/scrna-extra 4.4.0-4.4

  • version: 3.56.1
Latest release: over 1 year ago - 920 downloads - 1,350 dependencies
qdidiscoveryservices/flowr 1.0

  • version: 3.52.1
Latest release: over 3 years ago - 173 downloads - 1,476 dependencies
luisas/rde latest

  • version: 3.42.2
Latest release: about 5 years ago - 66 downloads - 549 dependencies
atttilacs/dsp_geomxtools latest

  • version: 3.50.3
Latest release: about 3 years ago - 114 downloads - 871 dependencies
tercen/flowcut_operator 0.1.8

  • version: 3.52.0
Latest release: almost 2 years ago - 95 downloads - 578 dependencies
tercen/normalyzer_operator 0.1.4

  • version: 3.52.0
Latest release: almost 2 years ago - 101 downloads - 590 dependencies
nolandocker/chipseq latest

Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.

  • version: 3.42.0
Latest release: almost 3 years ago - 93 downloads - 359 dependencies
dvav/bioconductor latest

  • version: 3.56.2
Latest release: over 2 years ago - 72 downloads - 297 dependencies
alenaerts/deseq2 v1

  • version: 3.56.2
Latest release: over 2 years ago - 22 downloads - 480 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 3.46.0
Latest release: almost 3 years ago - 77 downloads - 293 dependencies
jafoltz/sc_python 8

  • version: 3.50.3
Latest release: almost 3 years ago - 122 downloads - 438 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 3.54.0
Latest release: about 3 years ago - 33 downloads - 598 dependencies
prismcmap/qc EPS005

  • version: 3.46.0
Latest release: 6 months ago - 739 downloads - 245 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 3.56.2
Latest release: over 2 years ago - 293 downloads - 529 dependencies
broadcptacdev/activedriver_mimp latest

  • version: 3.42.2
Latest release: almost 3 years ago - 92 downloads - 374 dependencies
lishuangshuang3/dnbc4dev 2.0.3

  • version: 3.54.0
Latest release: over 2 years ago - 124 downloads - 1,043 dependencies
luisas/r_sc.simg latest

  • version: 3.42.2
Latest release: about 5 years ago - 21 downloads - 260 dependencies
dhspence/docker-rstudio-python latest

  • version: 3.54.2
Latest release: almost 3 years ago - 111 downloads - 272 dependencies
crpeters/r-methylkit 4.2.1

  • version: 3.54.0
Latest release: about 3 years ago - 80 downloads - 383 dependencies
stefanucciluca/tregopathies latest

  • version: 3.54.2
Latest release: over 2 years ago - 91 downloads - 488 dependencies
prismcmap/lfc 0.0.1

  • version: 3.46.0
Latest release: over 2 years ago - 1,066 downloads - 245 dependencies
chriswyatt/trandecoder.nf firstrun

  • version: 3.42.0
Latest release: almost 6 years ago - 22 downloads - 69 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 3.54.2
Latest release: 9 months ago - 2,648 downloads - 757 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 3.46.0
Latest release: almost 5 years ago - 13 downloads - 435 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 3.56.2
Latest release: over 1 year ago - 1,193 downloads - 6,961 dependencies
prismcmap/batch_correction APS005

  • version: 3.46.0
Latest release: 4 months ago - 956 downloads - 245 dependencies
gyusikhwang/tgs v1

  • version: 3.50.3
Latest release: almost 3 years ago - 58 downloads - 1,095 dependencies
alexsickler/open-pedcan latest

  • version: 3.42.2
Latest release: almost 3 years ago - 219 downloads - 864 dependencies
sbastkowski/quatradis-base latest-arm64

  • version: 3.54.1
Latest release: 8 months ago - 206 downloads - 396 dependencies
broadcptac/panoply_so_nmf_sankey_report DEV

  • version: 3.42.2
Latest release: over 2 years ago - 74 downloads - 383 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 3.42.0
Latest release: over 5 years ago - 10 downloads - 431 dependencies