Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
Package Usage : cran : limma
Explore the latest package usage data for limma in the cran ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 409
Total downloads: 2,289,301
More details on packages.ecosyste.ms - JSON
nfcore/rnaseq dev
Docker Image for nf-core/rnaseq project.
- version: 3.44.1
veupathdb/rserve 7
- version: 3.54.2
ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 3.34.9
broadinstitute/gtex_eqtl V10
GTEx Consortium: eQTL pipeline based on FastQTL
- version: 3.34.9
broadinstitute/terra-jupyter-aou 8bf6b13
- version: 3.54.0
ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30
- version: 3.34.9
ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30
- version: 3.34.9
nfcore/atacseq latest
A Docker container for the nf-core/atacseq pipeline.
- version: 3.42.0
nfcore/chipseq dev
A docker image for nf-core/chipseq
- version: 3.44.1
nfcore/smrnaseq dev
A Docker container for the nf-core/smrnaseq pipeline.
- version: 3.40.2
mirekphd/ml-cpu-r40-rs-cust 20230912
- version: 3.56.2
dhspence/docker-genomic-analysis 122121
From Chris Miller's example
- version: 3.42.2
mirekphd/ml-cpu-r36-rs-cust latest
- version: 3.52.2
ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 3.34.9
mirekphd/ml-cpu-r36-base latest
- version: 3.52.1
kbase/kbase sdkbase.latest
- version: 3.18.13
ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 3.34.9
qdidiscoveryservices/ms_pipeline latest
- version: 3.46.0
ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 3.34.9
patroonorg/patroondeps latest
- version: 3.54.2
dhspence/docker-biscuit latest
- version: 3.36.5
ccdlstaging/dr_compendia 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 3.34.9
biocontainers/ipo develop
A Tool for automated Optimization of XCMS Parameters
- version: 3.34.5
nfcore/nanoseq dev
Nanopore demultiplexing, QC and alignment pipeline
- version: 3.46.0
nfcore/proteomicslfq dev
A Docker Container for label free quantification for proteomics data.
- version: 3.46.0
nfcore/diaproteomics dev
A Docker container for nf-core/diaproteomics
- version: 3.44.1
mirekphd/ml-cpu-r35-rs 20190201
- version: 3.38.3, 3.36.5
veitveit/isolabeledprotocol latest
Discontinued, see github.com/ProtProtocols/IsoProt for updates
- version: 3.34.9
prismcmap/depmap_versions dd55695d58fb
- version: 3.46.0
dhspence/docker-homer latest
docker with chip-seq tool homer
- version: 3.36.5
nfcore/exoseq dev
A docker container for the ExoSeq pipeline
- version: 3.36.5
nfcore/lncpipe dev
A Docker image for nf-core/lncpipe
- version: 3.36.5
gene110/nipt_report latest
- version: 3.34.9
kbase/kbase_base latest
KBase Base Image containing Core services and runtime
- version: 3.18.13
kbase/sdkbase latest
- version: 3.18.13
prismcmap/drc-module robust_DRC
- version: 3.46.0
veitveit/vsclust release-1.2.1
For more details, see https://bitbucket.org/veitveit/vsclust
- version: 3.54.2
dhspence/docker-sicer latest
- version: 3.36.2
qdidiscoveryservices/limma-voom 4.2.0
- version: 3.52.0
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2
- version: 3.50.3
prismcmap/norm-module 26be7aa8ab48
- version: 3.46.0
dhspence/docker-basestation latest
- version: 3.36.2
qdidiscoveryservices/py3_cellranger 6.1.2
- version: 3.44.1
veitveit/complexbrowser release-1.6
- version: 3.58.1, 3.54.0
mirekphd/ml-cpu-r35-jnb devel_2b2752c
- version: 3.36.1
dhspence/docker-dss latest
- version: 3.42.2
koki/pagoda latest
- version: 3.32.5
veitveit/polystest release-1.3.4
- version: 3.56.1
tercen/runtime-flowsuite 3.15-4
- version: 3.52.4
biocontainers/bioconductor-limma v3.30.8dfsg-1-deb_cv1
- version: 3.30.8
qdidiscoveryservices/scrna_downstream 1.1
- version: 3.48.3
recetox/ramclustr 1.1.0-recetox0
- version: 3.44.3
prismcmap/sushi develop
- version: 3.46.0
qdidiscoveryservices/bam_to_10x_counts latest
- version: 3.50.3
chgyi/bio 3.5.1
- version: 3.36.3
biocontainers/bioconductor-edger v3.14.0dfsg-1-deb_cv1
- version: 3.30.8
biocontainers/bioconductor-metagenomeseq v1.16.0-2-deb_cv1
- version: 3.30.8
chgyi/metaware_rna_denovo latest
- version: 3.38.3
mirekphd/ml-cpu-r35-nx devel_fdbf539
- version: 3.36.2
dhspence/docker-manta 1.5.0
- version: 3.36.2
dhspence/docker-hiccompare latest
- version: 3.42.2
atttilacs/dsp_geomxtools latest
- version: 3.50.3
kcapd/wings-genomics latest
WINGS workflow system with software for genomics operations.
- version: 3.30.13
atttilacs/seurat_big latest
- version: 3.50.3
mirekphd/ml-cpu-r35-rdp 20180918
- version: 3.36.3
jafoltz/scclassify latest
- version: 3.50.3
crukmi/mesa main
- version: 3.53.10
testalabgh/downstream signac-1.4.0
- version: 3.50.3
atttilacs/dsp_giotto latest
- version: 3.50.3
veitveit/isoprot latest
- version: 3.38.3
gene110/reportnipt550 latest
- version: 3.42.2
veitveit/compomicsworkflow dev
- version: 3.46.0
mlepetit/ranalysis 3.3.4
- version: 3.48.3
tercen/flowsuite 0.0.4
- version: 3.46.0
scgfacility/rstudio-course22 v0.11
image used to run the course 2022
- version: 3.54.0
koki/tensor-project-parasite 20211013
- version: 3.48.3
gesiscss/binder-ngs-2ddocs-2d2020-2dggg-2d298-2dfirst-2dday-2drnaseq-c342e4 dca58a4e2661655c1469b51f54f6baafdd836726
- version: 3.42.0
qdidiscoveryservices/quantiseqr v1
- version: 3.51.5
ccdlstaging/dr_common_tests 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 3.34.9
tercen/flowsom_operator 1.6.0
- version: 3.52.0
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520
- version: 3.42.0
dhspence/docker-vep 93
- version: 3.36.2
mirekphd/ml-cpu-r35-guac devel_6f33d1e
- version: 3.36.1
qdidiscoveryservices/bam_to_10x_counts_pandoc latest
- version: 3.50.3
doejgi/trinityrnaseq-wdl 2.11.0b
- version: 3.42.2, 3.54.0