broadinstitute/genomes-in-the-cloud 2.1.1

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

broadinstitute/gatk 4.6.1.0

Official release repository for GATK versions 4.x

mesosphere/spark-dev 8f6ac93a6ff61e9452f6f0cf6769c05a4646a6e7

spark testing

amazon/aws-glue-libs 5.0.3

Docker container image for AWS Glue ETL

mesosphere/kudo-spark-operator 3.0.0-1.1.0-rc3

broadinstitute/terra-jupyter-aou 2.1.13

broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

mirekphd/ml-cpu-py38-jup-cust 20230623

mirekphd/ml-cpu-r40-rs-cust 20230912

mesosphere/jupyter-service-worker dac48ec9a330e35c81c72c588391fda43a53220fb17609e0f9bf7c717e9ab11f-base

mirekphd/ml-cpu-py37-jup-cust 20230107

mirekphd/ml-gpu-py38-cuda101-cust latest

mesosphere/spark-operator 3.1.1-1.1.17

mirekphd/ml-cpu-r36-rs-cust latest

mirekphd/ml-cpu-r40-base 20230912

vanallenlab/sv-pipeline rlc_aou_evidencetable_fix

mirekphd/ml-cpu-py37-vsc-cust 20200419

mirekphd/ml-gpu-py38-cuda112-cust 20230623

mirekphd/ml-cpu-r36-base latest

broadinstitute/gatk-dev NVSCOREVARIANTS-PREVIEW-SNAPSHOT

GATK Development

mesosphere/mesosphere-data-toolkit latest

rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

patroonorg/patroondeps latest

mirekphd/ml-cpu-py310-jup-cust 20221211

broadinstitute/terra-jupyter-gatk 0.0.13

mesosphere/mesosphere-jupyter-service latest

dmartinez05/tamuta2 latest

broadinstitute/fungal_gatk4 gatk4.5.0.0

mirekphd/ml-gpu-h2o-ex105 20230724

mirekphd/ml-gpu-py36-cuda90 20191013

mirekphd/ml-pred-py37-lite 20230601

mirekphd/ml-fs-lite 20230601

mirekphd/ml-gpu-py36-cuda8 20190218

nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

intelliseqngs/task_bam-bsqr 1.2.2

intelliseqngs/task_bam-filter-mismatch 1.4.1

intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

intelliseqngs/gatk-4.1.7.0 1.0.4

intelliseqngs/task_bam-metrics 1.2.8

intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

intelliseqngs/gatk-4.1.6.0 2.0.2

intelliseqngs/task_mt-varcall-mutect2 1.1.2

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

intelliseqngs/gatk-4.2.0.0 1.0.0

intelliseqngs/task_vcf-concat 1.0.4

intelliseqngs/gatk-4.1.9.0 1.0.0

intelliseqngs/task_vcf-anno-cosmic 2.1.6

intelliseqngs/task_mt-realign 1.1.2

intelliseqngs/task_bam-gatk-m2 1.1.2

intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

hoonbiolab/cellranger v1.0

intelliseqngs/task_vcf-prepare 1.0.4

mirekphd/ml-cpu-r35-rs 20190201

mirekphd/ml-gpu-h2o-ex91 latest

nfcore/exoseq dev

A docker container for the ExoSeq pipeline

intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

mirekphd/ml-pred-py36-lite latest

wiebekenza/pac latest

intelliseqngs/task_bed-to-interval-list 1.1.5

qdidiscoveryservices/gatk-v2461_bwa_aws latest

intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

vanallenlab/sv-pipeline-qc gnomad_v3_qc

intelliseqngs/task_vcf-concat-beagle 1.1.3

intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

intelliseqngs/resources longranger_v0.1

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

nuest/renjin 0.9.2726

Renjin

mirekphd/ml-cpu-r35-jnb devel_2b2752c

hoonbiolab/align_dna v1.3

intelliseqngs/task_pileup-merge 1.0.2

aalamsoft/qbot latest

mirekphd/ml-cpu-py36-jup 20190218

intelliseqngs/task_vcf-filter-align-errors 1.1.0

trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

intelliseqngs/astrolabe 1.0.0

mirekphd/ml-pred-py36-cuda90 20190826