robertplayer/scidap-qiime2 stable

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

btrspg/r-env cache

ocdr/ds-apps 1.0.43

koki/urchin_workflow_seurat 20251014

genular/base_image 2.0.0

Base image used in PADNORA - https://github.com/genular/pandora

mlepetit/ranalysis 3.3.4

weizhoujp/rchtc 4.3.0

gnwanne/atac latest

yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

tariship/dev_sync_directories latest

crukcibioinformatics/sequencingbase 9.5.4

scgfacility/rstudio-course22 v0.11

image used to run the course 2022

cheyne0328/rstudio zxy

mirekphd/ml-cpu-r35-nx devel_fdbf539

nathanprovin/cellcom 1.2.2

tercen/automated_gating_operator 1.0.3

intiquan/iqdesktop latest

matzieb/shiny-4.0.3-seurat4-spatial latest

rgregstacey/seurat_image 2.1

payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

qdidiscoveryservices/seurat_cell_annotation latest

mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

tipsarin/kubeflow-rstudio latest

rstudio for kubeflow

koki/velocytor 20221015

ghhenry/curio-seeker-pipeline latest

qdidiscoveryservices/bam_to_10x_counts latest

alanocallaghan/high-dimensional-stats-r latest

brianyee/cropseq-essentials 1.0.0

koki/bindsc 20220609

uabbds/zebrafish_telencephalon_atlas_app 1.0.0

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

mshriver01/share_task_seurat latest

tercen/faust_operator 0.1.4

mfsentma/atacseq latest

bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

alexthiery/archr 3.1

avi156/rocker-binder-upd 4.2.2

denklewer/linseedv2 latest

nilesh0404/st_visualizer m1_0.1.2

alexthiery/schelper seurat-schelper-0.3.5

mlepetit/rnormalisation 1.0.0

chiajungl/scrna-extra 4.4.0-4.4

qdidiscoveryservices/flowr 1.0

luisas/rde latest

genular/pandora 2.0.0

PANDORA - https://pandora.atomic-lab.org

uvarc/rstudio tam5xe

felipexgonzalez/am-2023-amd64 latest

natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

jafoltz/sc_python 8

andrewatmp/qiime_unzip latest

daltoncp/rstudio_celeganssinglecell 4.2_12

lishuangshuang3/dnbc4dev 2.0.3

luisas/r_sc.simg latest

ethill/qiime2 latest

docker container for qiime2

dpraveen511/spot spot_ec2

stefanucciluca/tregopathies latest

etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

qdidiscoveryservices/seurat_tidyverse latest

nikhil166/cellxgene_vip_docker v2.4

gyusikhwang/tgs v1

alexsickler/open-pedcan latest

etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

granatumx/gbox-cellid-sctype 1.0.2

emersonchao/dsc180b latest

qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

tercen/normalise_cytof_operator 0.2.3

mshriver01/share_task_archr latest

bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

mknudson/share_task_cell_annotation mei-cell-annotation

qdidiscoveryservices/flower v3

mikesiwenwu/eversus_benchmarking v7_s3test

brusconi/seurat new

brianyee/r-essentials 2.0.0

stormgod/deepmaps-cpu latest

lizzyr/pseudo_ko 1.0.3

biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

tercen/tercen_studio_flowsuite 0.0.1

apollodorus/polyglot v1

ucigenomics/cellchatnotebook 2.1.2

nfancy/scflow 0.7.4

fgualdr/envimpulse latest

qdidiscoveryservices/pseudobulk 2.0.2

jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

fluentin55/singlecell_docker 1.2

crukmi/liana 0.1.9

cliu97/r4.3_seurat latest

payne6861/seurat v1.0.0

alexthiery/archr_seurat_signac_mega 3.2

bixbeta/pavian v1

zwcdocker/seurat latest

fgualdr/env_norm_gr_idr latest

yosuketanigawa/rstudio_yt latest

andrewsg/archr dev

sheddn/bioinformatics-tools latest

ohtichechaivetafahwohdei/dev v0

Dev images for CI/CD

elynrfw/gerald-test latest

njjai/genebasis latest

chiajungl/scrna 4.4.0-4.4