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Package Usage : cran : leiden

Explore the latest package usage data for leiden in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 189
Total downloads: 151,652

More details on packages.ecosyste.ms - JSON

broadinstitute/terra-jupyter-aou 2.1.13

  • version: 0.4.3
Latest release: over 2 years ago - 96,569 downloads - 4,112 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 0.4.3
Latest release: almost 2 years ago - 28,089 downloads - 10,962 dependencies
ocdr/ds-apps 1.0.43

  • version: 0.4.3, 0.4.3.1
Latest release: over 1 year ago - 3,932 downloads - 3,778 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 0.4.3
Latest release: over 1 year ago - 3,981 downloads - 1,464 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 0.3.3
Latest release: over 3 years ago - 343 downloads - 1,375 dependencies
koki/sctensor-experiments 20220208

  • version: 0.3.9
Latest release: over 3 years ago - 259 downloads - 2,071 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 0.3.9
Latest release: over 3 years ago - 426 downloads - 1,716 dependencies
koki/biocdev 20230818

  • version: 0.4.3
Latest release: almost 2 years ago - 301 downloads - 1,504 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 0.3.9
Latest release: almost 4 years ago - 169 downloads - 2,087 dependencies
atttilacs/seurat_big latest

  • version: 0.4.3
Latest release: over 2 years ago - 495 downloads - 997 dependencies
jafoltz/scclassify latest

  • version: 0.3.9
Latest release: over 2 years ago - 94 downloads - 1,079 dependencies
testalabgh/downstream signac-1.4.0

  • version: 0.4.3
Latest release: over 2 years ago - 485 downloads - 3,517 dependencies
mlepetit/ranalysis 3.3.4

  • version: 0.3.9
Latest release: over 2 years ago - 221 downloads - 2,131 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 0.4.3
Latest release: over 2 years ago - 149 downloads - 382 dependencies
qdidiscoveryservices/rocker_seurat_seurat_disk 4.0.5

  • version: 0.3.9
Latest release: over 3 years ago - 45 downloads - 1,907 dependencies
koki/tensor-projects-machima 20220827

  • version: 0.4.2
Latest release: almost 3 years ago - 120 downloads - 1,441 dependencies
koki/urchin_workflow_seurat 20250213

  • version: 0.4.3
Latest release: 6 months ago - 123 downloads - 1,471 dependencies
bryanfisk/capybara latest

  • version: 0.3.9
Latest release: over 2 years ago - 48 downloads - 1,067 dependencies
huitacademictechnology/fas-rstudio-general sha-47ae0c3

  • version: 0.4.3
Latest release: over 2 years ago - 134 downloads - 1,496 dependencies
qdidiscoveryservices/seurat_cell_annotation latest

  • version: 0.4.3
Latest release: over 2 years ago - 57 downloads - 699 dependencies
tipsarin/kubeflow-rstudio latest

rstudio for kubeflow

  • version: 0.3.9
Latest release: over 3 years ago - 44 downloads - 1,312 dependencies
koki/velocytor 20221015

  • version: 0.4.3
Latest release: almost 3 years ago - 58 downloads - 1,452 dependencies
ghhenry/curio-seeker-pipeline latest

  • version: 0.4.3
Latest release: over 2 years ago - 37 downloads - 926 dependencies
luisas/rdeanalysis latest

  • version: 0.3.3
Latest release: over 5 years ago - 47 downloads - 508 dependencies
uabbds/zebrafish_telencephalon_atlas_app 1.0.0

  • version: 0.4.3
Latest release: about 2 years ago - 187 downloads - 1,409 dependencies
luisas/rfasta latest

  • version: 0.3.3
Latest release: almost 5 years ago - 27 downloads - 501 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 0.3.9
Latest release: over 2 years ago - 61 downloads - 2,142 dependencies
koki/bindsc 20220609

  • version: 0.4.2
Latest release: about 3 years ago - 43 downloads - 2,060 dependencies
luisas/rde latest

  • version: 0.3.3
Latest release: over 4 years ago - 43 downloads - 549 dependencies
sheddn/bioinformatics-tools latest

  • version: 0.4.3
Latest release: over 2 years ago - 54 downloads - 2,518 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 0.4.3
Latest release: 10 months ago - 861 downloads - 6,961 dependencies
luisas/r_sc latest

  • version: 0.3.3
Latest release: over 4 years ago - 20 downloads - 536 dependencies
shl198/sc_ppl 202306

  • version: 0.4.3
Latest release: about 2 years ago - 63 downloads - 2,005 dependencies
gongx030/ensemblemerge 2.1.24

Docker image for running ensemblemerge package.

  • version: 0.4.3
Latest release: over 2 years ago - 38 downloads - 546 dependencies
gnwanne/decontx latest

  • version: 0.4.3
Latest release: over 2 years ago - 49 downloads - 938 dependencies
qdidiscoveryservices/ubuntu-1604-pipeline_docker-r_and_bioconductor latest

  • version: 0.3.3
Latest release: almost 5 years ago - 13 downloads - 1,153 dependencies
gnwanne/atac latest

  • version: 0.4.3
Latest release: over 2 years ago - 27 downloads - 688 dependencies
viascientific/cellxgene_vip_app 1.1.1

  • version: 0.4.3
Latest release: about 2 years ago - 119 downloads - 2,287 dependencies
qdidiscoveryservices/sc_pip_r_and_py latest

  • version: 0.3.6
Latest release: over 4 years ago - 14 downloads - 1,097 dependencies
curiobioinformatics/curio-seeker-pipeline 2023.12.29

  • version: 0.4.3, 0.4.3.1
Latest release: over 1 year ago - 20,402 downloads - 1,523 dependencies
mparikhbroad/soupx 1.0.0

  • version: 0.4.3
Latest release: over 2 years ago - 118 downloads - 1,154 dependencies
kisudsoe/r-base latest

  • version: 0.4.3
Latest release: over 2 years ago - 127 downloads - 1,107 dependencies
cjha15/dockerfile BC

  • version: 0.4.3
Latest release: almost 2 years ago - 143 downloads - 488 dependencies
qdidiscoveryservices/cellranger7.1.0_py3_r4 latest

  • version: 0.4.3
Latest release: over 2 years ago - 43 downloads - 1,029 dependencies
luisas/r_sc.simg latest

  • version: 0.3.3
Latest release: over 4 years ago - 18 downloads - 260 dependencies
bioconductor/ismb.osca 124cbc0

  • version: 0.4.3
Latest release: about 2 years ago - 603 downloads - 1,422 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 0.3.7
Latest release: over 4 years ago - 13 downloads - 435 dependencies
alexthiery/seurat-monocle 0.1

  • version: 0.4.3
Latest release: over 2 years ago - 62 downloads - 1,062 dependencies
alexthiery/archr 3.1

  • version: 0.4.3
Latest release: about 2 years ago - 186 downloads - 819 dependencies
njjtemp/scrattch-mapping 4.2.0

  • version: 0.4.3, 0.3.9
Latest release: over 2 years ago - 588 downloads - 850 dependencies
hway/cellxgene_vip latest

  • version: 0.4.3
Latest release: over 2 years ago - 26 downloads - 2,125 dependencies
abelean/seurat_azimuth 5.0.1

  • version: 0.4.3
Latest release: over 1 year ago - 1,367 downloads - 1,141 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 0.3.2
Latest release: almost 5 years ago - 10 downloads - 431 dependencies
bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

  • version: 0.3.7
Latest release: 12 months ago - 39 downloads - 421 dependencies
markderbyshire/frustratometer version1.0

FrustratometeR R package from https://rdrr.io/github/proteinphysiologylab/frustratometeR/.

  • version: 0.4.3
Latest release: over 2 years ago - 15 downloads - 231 dependencies
stormgod/deepmaps-cpu latest

  • version: 0.4.3
Latest release: over 2 years ago - 67 downloads - 1,710 dependencies
lizzyr/pseudo_ko 1.0.3

  • version: 0.4.3
Latest release: almost 2 years ago - 34 downloads - 379 dependencies
almahmoud/anvilrstudiotest devel-3.17

  • version: 0.4.3
Latest release: over 2 years ago - 59 downloads - 1,579 dependencies
apollodorus/polyglot v1

  • version: 0.4.3
Latest release: over 2 years ago - 54 downloads - 428 dependencies
ucigenomics/cellchatnotebook 2.1.2

  • version: 0.4.3
Latest release: 12 months ago - 30 downloads - 1,564 dependencies
qdidiscoveryservices/pseudobulk 2.0.2

  • version: 0.3.6
Latest release: 11 months ago - 586 downloads - 1,112 dependencies
payne6861/seurat v1.0.0

  • version: 0.4.3
Latest release: over 2 years ago - 16 downloads - 1,862 dependencies
gcriogooglesamples/rethinking v2

  • version: 0.4.2
Latest release: over 2 years ago - 136 downloads - 3,299 dependencies
almahmoud/terra-jupyter bioc

  • version: 0.4.3
Latest release: over 2 years ago - 62 downloads - 2,217 dependencies
felixschlesinger/assign_types v0.2

  • version: 0.4.3
Latest release: over 2 years ago - 290 downloads - 503 dependencies
ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

  • version: 0.3.7
Latest release: over 2 years ago - 44 downloads - 406 dependencies
bixbeta/cluster_profiler v1

  • version: 0.3.7
Latest release: over 2 years ago - 17 downloads - 1,038 dependencies
brianyee/celligrate 55ba642

  • version: 0.4.3
Latest release: over 2 years ago - 18 downloads - 2,522 dependencies
brianyee/r-essentials 1.0.0

  • version: 0.4.3
Latest release: over 2 years ago - 76 downloads - 1,682 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 0.4.3
Latest release: almost 2 years ago - 224 downloads - 529 dependencies
hway/seurat2scanpy_converter latest

  • version: 0.4.3
Latest release: over 2 years ago - 34 downloads - 556 dependencies
koki/seurat2isee 20221125

  • version: 0.4.3
Latest release: over 2 years ago - 27 downloads - 554 dependencies
dsouzd04/himc_zellkonverter 1.6.5

  • version: 0.4.3
Latest release: over 2 years ago - 63 downloads - 953 dependencies
rdshear/biochail_with_jre8 latest

  • version: 0.4.3
Latest release: over 2 years ago - 25 downloads - 564 dependencies
ikeller13/r-st-normalising 4.2.2

  • version: 0.4.3
Latest release: over 2 years ago - 15 downloads - 209 dependencies
alkoenig08/harmonyseurat latest

Docker container built on satijalab/seurat with Broad Institute's "Harmony" package installed.

  • version: 0.4.3
Latest release: about 2 years ago - 79 downloads - 931 dependencies
lurcio/rstudio-test 2

  • version: 0.4.3
Latest release: about 2 years ago - 84 downloads - 2,139 dependencies
lishuangshuang3/dnbc4dev 2.0.3

  • version: 0.4.2
Latest release: about 2 years ago - 116 downloads - 1,043 dependencies
almahmoud/teachmultipleximaging-biocanvil main

  • version: 0.4.2
Latest release: almost 3 years ago - 29 downloads - 2,268 dependencies
apollodorus/genentech-jp v1

  • version: 0.3.9
Latest release: over 2 years ago - 45 downloads - 1,947 dependencies
bixbeta/pavian v1

  • version: 0.3.7
Latest release: over 2 years ago - 14 downloads - 388 dependencies
zwcdocker/seurat latest

  • version: 0.3.9
Latest release: over 2 years ago - 20 downloads - 655 dependencies
compbiocore/dscov_sct 20221201

  • version: 0.4.3
Latest release: over 2 years ago - 32 downloads - 1,031 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 0.4.3
Latest release: over 2 years ago - 120 downloads - 512 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 0.4.3
Latest release: almost 2 years ago - 52 downloads - 1,562 dependencies
bicore/scrattch_mapping 0.51

  • version: 0.4.3, 0.4.2
Latest release: over 1 year ago - 753 downloads - 832 dependencies
dabbleofdevops/r-datascience 4.2.2

  • version: 0.4.3
Latest release: over 2 years ago - 134 downloads - 816 dependencies
crukmi/nas-app latest

  • version: 0.4.3
Latest release: over 2 years ago - 31 downloads - 701 dependencies