Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : zlibbioc

Explore the latest package usage data for zlibbioc in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 702
Total downloads: 2,712,099

More details on packages.ecosyste.ms - JSON

veupathdb/rserve 8.1.4

  • version: 1.44.0
Latest release: 4 months ago - 626,889 downloads - 550 dependencies
ccdlstaging/dr_downloaders 1.45.8

  • version: 1.24.0
Latest release: over 1 year ago - 127,834 downloads - 1,028 dependencies
broadinstitute/terra-jupyter-aou 2.1.13

  • version: 1.44.0, 1.40.0
Latest release: about 2 years ago - 95,633 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: 1.24.0
Latest release: over 1 year ago - 94,460 downloads - 1,220 dependencies
nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 1.38.0
Latest release: over 3 years ago - 95,030 downloads - 297 dependencies
rocker/ropensci 3.4.1

  • version: 1.26.0
Latest release: over 7 years ago - 88,724 downloads - 1,589 dependencies
ccdlstaging/dr_salmon 1.45.8

  • version: 1.24.0
Latest release: over 1 year ago - 61,084 downloads - 916 dependencies
nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

  • version: 1.32.0
Latest release: over 2 years ago - 54,822 downloads - 352 dependencies
biocontainers/control-freec v11.5_cv1

  • version: 1.16.0
Latest release: about 5 years ago - 52,152 downloads - 432 dependencies
nfcore/chipseq 1.2.2

A docker image for nf-core/chipseq

  • version: 1.34.0
Latest release: almost 4 years ago - 52,400 downloads - 309 dependencies
dhspence/docker-basespace_chromoseq latest

  • version: 1.30.0
Latest release: over 5 years ago - 38,683 downloads - 559 dependencies
nfcore/eager 2.5.2

A Docker image for the nf-core/eager pipeline.

  • version: 1.36.0
Latest release: 7 months ago - 46,224 downloads - 738 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 1.46.0
Latest release: over 1 year ago - 25,819 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.32.0
Latest release: about 3 years ago - 19,985 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 1.42.0
Latest release: over 2 years ago - 14,641 downloads - 11,684 dependencies
ccdlstaging/dr_no_op 1.45.8

  • version: 1.24.0
Latest release: over 1 year ago - 17,904 downloads - 894 dependencies
nfcore/ampliseq 1.2.0

A Docker image for nf-core/ampliseq.

  • version: 1.28.0
Latest release: almost 4 years ago - 10,515 downloads - 331 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 1.42.0
Latest release: over 2 years ago - 6,916 downloads - 12,259 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 1.39.0
Latest release: over 3 years ago - 3,671 downloads - 1,218 dependencies
ccdlstaging/dr_smasher 1.45.8

  • version: 1.24.0
Latest release: over 1 year ago - 7,326 downloads - 884 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 1.36.0
Latest release: about 4 years ago - 3,042 downloads - 1,044 dependencies
ccdlstaging/dr_illumina 1.45.8

  • version: 1.24.0
Latest release: over 1 year ago - 6,466 downloads - 893 dependencies
patroonorg/patroondeps latest

  • version: 1.44.0
Latest release: almost 2 years ago - 3,003 downloads - 1,677 dependencies
dhspence/docker-biscuit latest

  • version: 1.26.0
Latest release: about 6 years ago - 1,948 downloads - 807 dependencies
ccdlstaging/dr_compendia 1.45.8

  • version: 1.24.0
Latest release: over 1 year ago - 4,957 downloads - 877 dependencies
nfcore/airrflowreport dev

  • version: 1.44.0
Latest release: almost 2 years ago - 1,010 downloads - 409 dependencies
biocontainers/ipo develop

A Tool for automated Optimization of XCMS Parameters

  • version: 1.24.0
Latest release: over 6 years ago - 1,002 downloads - 366 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 1.32.0
Latest release: over 2 years ago - 1,210 downloads - 654 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: 1.36.0
Latest release: over 2 years ago - 1,069,006 downloads - 607 dependencies
nfcore/slamseq 1.0.0

A docker image for nf-core/slamseq

  • version: 1.28.0
Latest release: over 4 years ago - 34,728 downloads - 354 dependencies
nfcore/hic 1.3.0

A docker container for the nf-core/hic pipeline.

  • version: 1.34.0
Latest release: over 3 years ago - 15,362 downloads - 257 dependencies
nfcore/nanoseq 1.1.0

Nanopore demultiplexing, QC and alignment pipeline

  • version: 1.36.0
Latest release: about 4 years ago - 9,714 downloads - 340 dependencies
nfcore/scrnaseq 1.1.0

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 1.32.0
Latest release: almost 4 years ago - 7,770 downloads - 423 dependencies
nfcore/diaproteomics 1.2.4

A Docker container for nf-core/diaproteomics

  • version: 1.36.0
Latest release: almost 4 years ago - 7,092 downloads - 488 dependencies
hoonbiolab/cellranger v1.0

  • version: 1.32.0
Latest release: about 3 years ago - 924 downloads - 682 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 1.28.0
Latest release: almost 6 years ago - 1,293 downloads - 9,716 dependencies
veitveit/isolabeledprotocol latest

Discontinued, see github.com/ProtProtocols/IsoProt for updates

  • version: 1.24.0
Latest release: over 6 years ago - 727 downloads - 2,000 dependencies
dhspence/docker-homer latest

docker with chip-seq tool homer

  • version: 1.26.0
Latest release: about 6 years ago - 709 downloads - 606 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 1.26.0
Latest release: about 6 years ago - 1,189 downloads - 616 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: 1.26.0
Latest release: about 6 years ago - 1,196 downloads - 413 dependencies
seglh/exomedepth f4716ad

  • version: 1.42.0
Latest release: about 1 year ago - 1,391 downloads - 548 dependencies
gene110/nipt_report latest

  • version: 1.24.0
Latest release: over 3 years ago - 808 downloads - 676 dependencies
veitveit/vsclust release-1.3.2

For more details, see https://bitbucket.org/veitveit/vsclust

  • version: 1.44.0
Latest release: 8 months ago - 605 downloads - 1,148 dependencies
dhspence/docker-sicer latest

  • version: 1.26.0
Latest release: almost 6 years ago - 788 downloads - 1,147 dependencies
qdidiscoveryservices/limma-voom 4.2.0

  • version: 1.42.0
Latest release: over 2 years ago - 1,565 downloads - 1,382 dependencies
recetox/aplcms latest

  • version: 1.34.0
Latest release: over 3 years ago - 450 downloads - 458 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.40.0
Latest release: about 1 year ago - 3,452 downloads - 1,464 dependencies
dhspence/docker-basestation latest

  • version: 1.26.0
Latest release: almost 6 years ago - 313 downloads - 1,132 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 1.34.0
Latest release: about 3 years ago - 307 downloads - 1,375 dependencies
veitveit/complexbrowser release-1.6

  • version: 1.48.0, 1.44.0
Latest release: about 1 year ago - 318 downloads - 1,296 dependencies
austinhpatton123/r-4.2.2_uniprot.ws 2.38.0

  • version: 1.44.0
Latest release: about 2 years ago - 286 downloads - 381 dependencies
mirekphd/ml-cpu-r35-jnb devel_2b2752c

  • version: 1.26.0
Latest release: over 6 years ago - 291 downloads - 9,222 dependencies
dhspence/docker-dss latest

  • version: 1.32.0
Latest release: over 4 years ago - 389 downloads - 1,127 dependencies
hoonbiolab/align_dna v1.3

  • version: 1.32.0
Latest release: over 3 years ago - 277 downloads - 794 dependencies
tercen/flowsom 0.2.3

  • version: 1.36.0
Latest release: over 3 years ago - 302 downloads - 805 dependencies
tercen/runtime-flowsuite 3.15-4

  • version: 1.42.0
Latest release: over 2 years ago - 449 downloads - 1,641 dependencies
cimendes/splicing-pipelines-nf 3.1.ubuntu

  • version: 1.38.0
Latest release: about 2 years ago - 276 downloads - 227 dependencies
koki/sctensor-experiments 20220208

  • version: 1.40.0
Latest release: almost 3 years ago - 256 downloads - 2,071 dependencies
evolbioinfo/deseq2 v1.28.1

  • version: 1.34.0
Latest release: over 4 years ago - 211 downloads - 452 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 1.38.0
Latest release: almost 3 years ago - 424 downloads - 1,716 dependencies
recetox/ramclustr 1.1.0-recetox0

  • version: 1.34.0
Latest release: about 4 years ago - 195 downloads - 593 dependencies
koki/biocdev 20230818

  • version: 1.47.0
Latest release: over 1 year ago - 228 downloads - 1,504 dependencies
anand7899/rmarkdown latest

  • version: 1.44.0
Latest release: about 2 years ago - 268 downloads - 766 dependencies
prismcmap/sushi v0.0.2

  • version: 1.36.0
Latest release: about 3 years ago - 559 downloads - 723 dependencies
hoonbiolab/hmftools v1.1

  • version: 1.38.0
Latest release: over 3 years ago - 1,223 downloads - 693 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 1.40.0
Latest release: about 2 years ago - 197 downloads - 962 dependencies
austinhpatton123/cogeqc-1.2.0_r-4.2.2 latest

  • version: 1.44.0
Latest release: about 2 years ago - 174 downloads - 451 dependencies
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor

pcawg_broad_wgs_variant_callers

  • version: 1.24.0
Latest release: almost 7 years ago - 268 downloads - 865 dependencies
chgyi/bio 3.5.1

  • version: 1.26.0
Latest release: over 6 years ago - 165 downloads - 1,077 dependencies
canaantt/notitia-ocpu latest

This is part of zager/notitia.

  • version: 1.24.0
Latest release: about 7 years ago - 158 downloads - 633 dependencies
broadinstitute/pcawg_full 7

  • version: 1.22.0
Latest release: over 7 years ago - 161 downloads - 889 dependencies
dhspence/docker-rnaseq latest

  • version: 1.24.0
Latest release: almost 7 years ago - 159 downloads - 665 dependencies
hoonbiolab/hl_base v1.2

  • version: 1.32.0
Latest release: about 2 years ago - 173 downloads - 873 dependencies
chgyi/metaware_rna_denovo latest

  • version: 1.28.0
Latest release: almost 6 years ago - 171 downloads - 2,095 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 1.26.0
Latest release: over 6 years ago - 182 downloads - 9,302 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.26.0
Latest release: about 6 years ago - 144 downloads - 1,191 dependencies
dmiller15/sequenza 3.0.0

  • version: 1.26.0
Latest release: about 2 years ago - 132 downloads - 448 dependencies
dhspence/docker-hiccompare latest

  • version: 1.32.0
Latest release: over 3 years ago - 126 downloads - 1,271 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 1.39.0
Latest release: over 3 years ago - 126 downloads - 2,087 dependencies
atttilacs/dsp_geomxtools latest

  • version: 1.40.0
Latest release: over 2 years ago - 114 downloads - 871 dependencies
kcapd/wings-genomics latest

WINGS workflow system with software for genomics operations.

  • version: 1.20.0
Latest release: about 4 years ago - 109 downloads - 1,468 dependencies
atttilacs/seurat_big latest

  • version: 1.40.0
Latest release: about 2 years ago - 495 downloads - 997 dependencies
recetox/recetox-xmsannotator october-conda0

  • version: 1.38.0
Latest release: about 3 years ago - 95 downloads - 484 dependencies
broadinstitute/pcawg_tokens latest

  • version: 1.18.0
Latest release: over 8 years ago - 90 downloads - 1,472 dependencies
mirekphd/ml-cpu-r35-rdp 20180918

  • version: 1.26.0
Latest release: over 6 years ago - 93 downloads - 9,486 dependencies