broadinstitute/genomes-in-the-cloud 2.1.1

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

apache/zeppelin 0.12.0

Apache Zeppelin

coala/base pre

A simple docker image featuring coala and it's dependencies.

dit4c/dit4c-container-qgis latest

DIT4C image for QGIS

ashish1981/x86-r-z-appln latest

ashish1981/shinyapp-sarb latest

ccdlstaging/dr_affymetrix 1.45.8

rocker/ropensci 3.4.1

nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

ashish1981/s390x-r-appln-z 3.6.3

180a51c0/gh-action-buildapp latest

nfcore/mag 1.2.0

rocker/ml-verse 4.4.1

mirekphd/ml-cpu-r40-rs-cust 20230912

mirekphd/ml-cpu-r36-rs-cust latest

ccdlstaging/dr_no_op 1.45.8

ashish1981/zreferenceimplementation d17052022

ocdr/dkube-datascience-rs-tf-cpu-multiuser v2.6-19

nfcore/ampliseq 1.2.0

A Docker image for nf-core/ampliseq.

biocontainers/assemblytics v1.0ds-1-deb_cv1

rocker/tensorflow 3.6.1

Tensorflow & Keras libraries for machine learning (CPU version)

biocontainers/qcumber v1.0.14dfsg-1-deb_cv1

biocontainers/ea-utils v1.1.2dfsg-5-deb_cv1

biocontainers/trinityrnaseq v2.6.6dfsg-6-deb_cv1

biocontainers/nanook v1.33dfsg-1-deb_cv1

rocker/r-rmd latest

Rocker container for Rmarkdown packages

biocontainers/paleomix v1.2.13.3-1-deb_cv1

biocontainers/roary v3.12.0dfsg-2-deb_cv1

biocontainers/snakemake v5.4.0-1-deb_cv1

biocontainers/surankco v0.0.r5dfsg-2-deb_cv1

artemklevtsov/r-alpine 3.3.1

R docker images based on the alpine:latest

mirekphd/ml-cpu-r36-base latest

ashish1981/s390x-r-shiny latest

gesiscss/binder-juliasilge-2dsupervised-2dml-2dcase-2dstudies-2dcourse-1b08b0 eb13b6477d79950a9873e0966bd3aaaa0d043059

gesiscss/binder-rubydata-2dbinder-af0da2 b77e1d22eafca6c2ba3a22a8c4ea723b24f7c07e

mesosphere/mesosphere-data-toolkit latest

biocontainers/imputeme vv1.0.7_cv1

biocontainers/isee-galaxy v3.13_cv1.0.0

rocker/ml-gpu 3.6.0

Deprecated. see rocker/ml for modern GPU-enabled builds.

nfcore/epitopeprediction 1.1.0

A docker image for nf-core/epitopeprediction

ccdlstaging/dr_smasher 1.45.8

qdidiscoveryservices/ms_pipeline latest

ocdr/dkube-datascience-rs-sk-cpu-multiuser v0.23.2

ocdr/dkube-datascience-rs-tf-cpu v2.0.0

ashish1981/s390x-clefos-shiny latest

ccdlstaging/dr_illumina 1.45.8

ocdr/dkube-datascience-rs-pytorch-cpu-multiuser v1.5.1

conoria/alpine-r-bookdown latest

Dockerfile based on conoria/alpine-pandoc adding R and bookdown

ocdr/dkube-datascience-rs-tf-gpu-multiuser v2.6-19

rocker/tensorflow-gpu 3.6.0

DEPRECATED. Please use `rocker/ml` instead

ashish1981/x86-rbase-shiny-plumber d300422

gesiscss/binder-serhatcevikel-2dbdm-5f2019-e7b363 1239175be24a02ff0e1bcd30f865011dc1fca7d4

bgruening/docker-jupyter-notebook latest

Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

snoopycrimecop/training-notebooks master_merge_daily

A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO

broadinstitute/terra-jupyter-gatk 0.0.13

mesosphere/mesosphere-jupyter-service latest

dragonflyscience/niwaverse 2020-08-11

ccdlstaging/dr_compendia 1.45.8

rocker/cuda-dev 3.6.1

Adds CUDA and cudnn development libraries to rocker stack

tercen/dartrusttidy 1.0.10

gesiscss/binder-gesiscss-2ddata-5fscience-5fimage-117abb 49e91d93b12b6234447e34bd3a289a833841a4e8

gesiscss/binder-palmoreck-2ddockerfiles-2dfor-2dbinder-f98a72 e6751152f3669d7fa6b0892ed229918a75b153df

dragonflyscience/dragonverse-18.04 latest

afcai2c/r-studio-eda 20230130il5

R Studio with Exploritory Data Analysis AI/ML packages installed

nfcore/neutronstar 1.0.0

A Docker Container for nf-core/neutronstar

kbase/narrprereq 1.3

Narrative prerequisite base image (used by kbase/narrabase).

kbase/metrics latest

ocdr/dkube-datascience-rs-tf-gpu v2.0.0

nfcore/airrflowreport dev

dragonflyscience/sharknado 2025-06-23

recetox/retip 0.5.4-recetox4

Retention Time prediction for metabolomics

biocontainers/ipo develop

A Tool for automated Optimization of XCMS Parameters

kbase/errorlogging develop

nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

afcai2c/python-r-ai latest

Image with Python and R packages

gesiscss/binder-lmartinoty-2dlmartinoty-e3b0bd c626ad4bba1c566a8af5d745f4386d02e9fe9b44

tercen/runtime-r40 4.0.4-6

sourcegraph/codeintel-r insiders

nfcore/slamseq 1.0.0

A docker image for nf-core/slamseq

nfcore/scrnaseq 1.1.0

A Docker Container for the nf-core/scrnaseq pipeline.

intelliseqngs/task_vcf-uniq 1.0.0

hoonbiolab/cellranger v1.0

dg520/rsimple 1.1

mirekphd/ml-cpu-r35-rs 20190201

lucifer001/custom-rs-tf-multiuser gpu

dhspence/docker-homer latest

docker with chip-seq tool homer

tercen/runtime-r35 3.5.3-7

davidspek/kubeflow-datascience-notebook 0.8.6

This image contains the regular jupyter/datascience-notebook edited for it to work in kubeflow.

nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

gesiscss/singleuser-orc r2d-49e91d9

afcai2c/r-studio-dl latest

R Studio with Deep Learning AI/ML packages installed [builds upon jlab-eda]

gesiscss/binder-matjesg-2dais-5f2019-df9f9f c588d97bc20b1345ea549a5260d2ec36137e911b

afcai2c/r-studio rebuild

Basic installation of R Studio.