Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : sctransform

Explore the latest package usage data for sctransform in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 194
Total downloads: 159,359

More details on packages.ecosyste.ms - JSON

broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 0.3.5
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 0.3.5
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
nfcore/scrnaseq dev

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 0.3.2
Latest release: over 3 years ago - 7,707 downloads - 423 dependencies
ocdr/ds-apps test2

  • version: 0.4.1, 0.4.0
Latest release: 11 months ago - 3,555 downloads - 3,778 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 0.3.5
Latest release: about 1 year ago - 2,811 downloads - 1,464 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 0.2.1
Latest release: about 3 years ago - 302 downloads - 1,375 dependencies
koki/sctensor-experiments 20220208

  • version: 0.3.3
Latest release: almost 3 years ago - 206 downloads - 2,071 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 0.3.2
Latest release: almost 3 years ago - 354 downloads - 1,716 dependencies
koki/biocdev 20230818

  • version: 0.3.5
Latest release: about 1 year ago - 201 downloads - 1,504 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 0.3.2
Latest release: about 3 years ago - 111 downloads - 2,087 dependencies
atttilacs/seurat_big latest

  • version: 0.3.5
Latest release: almost 2 years ago - 495 downloads - 997 dependencies
jafoltz/scclassify latest

  • version: 0.3.3
Latest release: almost 2 years ago - 90 downloads - 1,079 dependencies
testalabgh/downstream signac-1.4.0

  • version: 0.3.5
Latest release: over 1 year ago - 485 downloads - 3,517 dependencies
mlepetit/ranalysis 3.3.4

  • version: 0.3.2
Latest release: almost 2 years ago - 79 downloads - 2,131 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 0.3.5
Latest release: almost 2 years ago - 75 downloads - 382 dependencies
qdidiscoveryservices/rocker_seurat_seurat_disk latest

  • version: 0.3.2
Latest release: about 3 years ago - 44 downloads - 1,907 dependencies
koki/tensor-projects-machima 20220827

  • version: 0.3.4
Latest release: about 2 years ago - 49 downloads - 1,441 dependencies
koki/urchin_workflow_seurat 20230616

  • version: 0.3.5
Latest release: over 1 year ago - 63 downloads - 1,471 dependencies
bryanfisk/capybara latest

  • version: 0.3.3
Latest release: almost 2 years ago - 35 downloads - 1,067 dependencies
huitacademictechnology/fas-rstudio-general sha-47ae0c3

  • version: 0.3.5
Latest release: over 1 year ago - 42 downloads - 1,496 dependencies
qdidiscoveryservices/seurat_cell_annotation latest

  • version: 0.3.5
Latest release: almost 2 years ago - 34 downloads - 699 dependencies
tipsarin/kubeflow-rstudio latest

rstudio for kubeflow

  • version: 0.3.3
Latest release: almost 3 years ago - 29 downloads - 1,312 dependencies
koki/velocytor 20221015

  • version: 0.3.5
Latest release: about 2 years ago - 39 downloads - 1,452 dependencies
ghhenry/curio-seeker-pipeline latest

  • version: 0.3.5
Latest release: almost 2 years ago - 27 downloads - 926 dependencies
luisas/rdeanalysis latest

  • version: 0.2.1
Latest release: over 4 years ago - 29 downloads - 508 dependencies
uabbds/zebrafish_telencephalon_atlas_app 1.0.0

  • version: 0.3.5
Latest release: over 1 year ago - 33 downloads - 1,409 dependencies
luisas/rfasta latest

  • version: 0.3
Latest release: about 4 years ago - 22 downloads - 501 dependencies
mlepetit/rnormalisation 1.0

  • version: 0.3.5
Latest release: almost 2 years ago - 33 downloads - 2,142 dependencies
koki/bindsc 20220609

  • version: 0.3.3
Latest release: over 2 years ago - 22 downloads - 2,060 dependencies
luisas/rde latest

  • version: 0.3
Latest release: almost 4 years ago - 20 downloads - 549 dependencies
sheddn/bioinformatics-tools latest

  • version: 0.3.5
Latest release: almost 2 years ago - 41 downloads - 2,518 dependencies
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5

  • version: 0.3.5
Latest release: about 1 year ago - 58 downloads - 6,961 dependencies
luisas/r_sc latest

  • version: 0.3
Latest release: about 4 years ago - 18 downloads - 536 dependencies
shl198/sc_ppl 202306

  • version: 0.3.5
Latest release: over 1 year ago - 52 downloads - 2,005 dependencies
gongx030/ensemblemerge 2.1.24

Docker image for running ensemblemerge package.

  • version: 0.3.5
Latest release: almost 2 years ago - 18 downloads - 546 dependencies
gnwanne/decontx latest

  • version: 0.3.5
Latest release: almost 2 years ago - 18 downloads - 938 dependencies
qdidiscoveryservices/ubuntu-1604-pipeline_docker-r_and_bioconductor latest

  • version: 0.2.1
Latest release: about 4 years ago - 13 downloads - 1,153 dependencies
gnwanne/atac latest

  • version: 0.3.5
Latest release: almost 2 years ago - 14 downloads - 688 dependencies
viascientific/cellxgene_vip_app 1.1.1

  • version: 0.3.5
Latest release: over 1 year ago - 46 downloads - 2,287 dependencies
qdidiscoveryservices/sc_pip_r_and_py latest

  • version: 0.3.2
Latest release: almost 4 years ago - 12 downloads - 1,097 dependencies
curiobioinformatics/curio-seeker-pipeline 363d9feeef37b9b99915dea19822d0f75d7c8898

  • version: 0.4.1, 0.3.5
Latest release: 11 months ago - 8,848 downloads - 1,523 dependencies
mparikhbroad/soupx 1.0.0

  • version: 0.3.5
Latest release: over 1 year ago - 86 downloads - 1,154 dependencies
kisudsoe/r-base latest

  • version: 0.3.5
Latest release: over 1 year ago - 83 downloads - 1,107 dependencies
cjha15/dockerfile BC

  • version: 0.3.5
Latest release: over 1 year ago - 92 downloads - 488 dependencies
qdidiscoveryservices/cellranger7.1.0_py3_r4 latest

  • version: 0.3.5
Latest release: almost 2 years ago - 12 downloads - 1,029 dependencies
luisas/r_sc.simg latest

  • version: 0.3
Latest release: almost 4 years ago - 12 downloads - 260 dependencies
bioconductor/ismb.osca 124cbc0

  • version: 0.3.5
Latest release: over 1 year ago - 299 downloads - 1,422 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 0.3.2
Latest release: over 3 years ago - 12 downloads - 435 dependencies
alexthiery/seurat-monocle 0.1

  • version: 0.3.5
Latest release: almost 2 years ago - 27 downloads - 1,062 dependencies
alexthiery/archr 3.1

  • version: 0.3.5
Latest release: over 1 year ago - 133 downloads - 819 dependencies
njjtemp/scrattch-mapping 2.9

  • version: 0.3.5, 0.3.3
Latest release: over 1 year ago - 315 downloads - 850 dependencies
hway/cellxgene_vip latest

  • version: 0.3.5
Latest release: almost 2 years ago - 13 downloads - 2,125 dependencies
abelean/seurat_azimuth 5b

  • version: 0.3.5
Latest release: over 1 year ago - 343 downloads - 1,141 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 0.2.1
Latest release: about 4 years ago - 10 downloads - 431 dependencies
bixbeta/czid v3

  • version: 0.3.2
Latest release: over 1 year ago - 12 downloads - 421 dependencies
stormgod/deepmaps-cpu latest

  • version: 0.3.5
Latest release: over 1 year ago - 31 downloads - 1,710 dependencies
lizzyr/pseudo_ko 1.0.3

  • version: 0.3.5
Latest release: about 1 year ago - 12 downloads - 379 dependencies
almahmoud/anvilrstudiotest devel-3.17

  • version: 0.3.5
Latest release: about 2 years ago - 10 downloads - 1,579 dependencies
apollodorus/polyglot v1

  • version: 0.3.5
Latest release: almost 2 years ago - 10 downloads - 428 dependencies
ucigenomics/cellchatnotebook 1.5.0

  • version: 0.3.5
Latest release: almost 2 years ago - 11 downloads - 1,564 dependencies
qdidiscoveryservices/pseudobulk 1.1

  • version: 0.3.2
Latest release: over 2 years ago - 10 downloads - 1,112 dependencies
payne6861/seurat v1.0.0

  • version: 0.3.5
Latest release: almost 2 years ago - 9 downloads - 1,862 dependencies
elynrfw/gerald-test latest

  • version: 0.3.5
Latest release: almost 2 years ago - 10 downloads - 349 dependencies
gcriogooglesamples/rethinking v2

  • version: 0.3.3
Latest release: almost 2 years ago - 10 downloads - 3,299 dependencies
almahmoud/terra-jupyter bioc

  • version: 0.3.5
Latest release: almost 2 years ago - 9 downloads - 2,217 dependencies
felixschlesinger/assign_types v0.2

  • version: 0.3.5
Latest release: over 1 year ago - 240 downloads - 503 dependencies
ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

  • version: 0.3.2
Latest release: almost 2 years ago - 8 downloads - 406 dependencies
bixbeta/cluster_profiler v1

  • version: 0.3.2
Latest release: almost 2 years ago - 8 downloads - 1,038 dependencies
brianyee/celligrate 55ba642

  • version: 0.3.5
Latest release: almost 2 years ago - 9 downloads - 2,522 dependencies
brianyee/r-essentials 1.0.0

  • version: 0.3.5
Latest release: over 1 year ago - 8 downloads - 1,682 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 0.3.5
Latest release: about 1 year ago - 60 downloads - 529 dependencies
hway/seurat2scanpy_converter latest

  • version: 0.3.5
Latest release: almost 2 years ago - 9 downloads - 556 dependencies
koki/seurat2isee 20221125

  • version: 0.3.5
Latest release: almost 2 years ago - 10 downloads - 554 dependencies
dsouzd04/himc_zellkonverter 1.6.5

  • version: 0.3.5
Latest release: almost 2 years ago - 25 downloads - 953 dependencies
rdshear/biochail_with_jre8 latest

  • version: 0.3.5
Latest release: almost 2 years ago - 9 downloads - 564 dependencies
ikeller13/r-st-normalising 4.2.2

  • version: 0.3.5
Latest release: almost 2 years ago - 8 downloads - 209 dependencies
alkoenig08/harmonyseurat latest

Docker container built on satijalab/seurat with Broad Institute's "Harmony" package installed.

  • version: 0.3.5
Latest release: over 1 year ago - 15 downloads - 931 dependencies
lurcio/rstudio-test 2

  • version: 0.3.5
Latest release: over 1 year ago - 23 downloads - 2,139 dependencies
lishuangshuang3/dnbc4dev latest

  • version: 0.3.5
Latest release: over 1 year ago - 73 downloads - 1,043 dependencies
almahmoud/teachmultipleximaging-biocanvil main

  • version: 0.3.3
Latest release: about 2 years ago - 6 downloads - 2,268 dependencies
apollodorus/genentech-jp v1

  • version: 0.3.3
Latest release: almost 2 years ago - 22 downloads - 1,947 dependencies
bixbeta/pavian v1

  • version: 0.3.2
Latest release: almost 2 years ago - 8 downloads - 388 dependencies
zwcdocker/seurat latest

  • version: 0.3.2
Latest release: almost 2 years ago - 7 downloads - 655 dependencies
compbiocore/dscov_sct 20221201

  • version: 0.3.5
Latest release: almost 2 years ago - 8 downloads - 1,031 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 0.3.5
Latest release: over 1 year ago - 75 downloads - 512 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 0.3.5
Latest release: over 1 year ago - 15 downloads - 1,562 dependencies
bicore/scrattch_mapping 0.51

  • version: 0.3.3, 0.3.5
Latest release: about 1 year ago - 573 downloads - 832 dependencies
dabbleofdevops/r-datascience 4.2.2

  • version: 0.3.5
Latest release: over 1 year ago - 34 downloads - 816 dependencies