veupathdb/rserve 8.2.2

ccdlstaging/dr_downloaders 1.45.8

broadinstitute/terra-jupyter-aou 2.1.13

ccdlstaging/dr_affymetrix 1.45.8

nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

ccdlstaging/dr_salmon 1.45.8

nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

nfcore/chipseq 1.2.2

A docker image for nf-core/chipseq

dhspence/docker-basespace_chromoseq latest

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

mirekphd/ml-cpu-r40-rs-cust 20230912

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

mirekphd/ml-cpu-r36-rs-cust latest

ccdlstaging/dr_no_op 1.45.8

nfcore/ampliseq 1.2.0

A Docker image for nf-core/ampliseq.

mirekphd/ml-cpu-r36-base latest

biocontainers/isee-galaxy v3.13_cv1.0.0

ccdlstaging/dr_smasher 1.45.8

ccdlstaging/dr_illumina 1.45.8

patroonorg/patroondeps latest

dhspence/docker-biscuit latest

ccdlstaging/dr_compendia 1.45.8

nfcore/airrflowreport dev

nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

nfcore/slamseq 1.0.0

A docker image for nf-core/slamseq

nfcore/hic 1.3.0

A docker container for the nf-core/hic pipeline.

nfcore/nanoseq 1.1.0

Nanopore demultiplexing, QC and alignment pipeline

nfcore/scrnaseq 1.1.0

A Docker Container for the nf-core/scrnaseq pipeline.

hoonbiolab/cellranger v1.0

mirekphd/ml-cpu-r35-rs 20190201

dhspence/docker-homer latest

docker with chip-seq tool homer

nfcore/exoseq dev

A docker container for the ExoSeq pipeline

nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

seglh/exomedepth f4716ad

gene110/nipt_report latest

veitveit/vsclust release-1.3.2

For more details, see https://bitbucket.org/veitveit/vsclust

dhspence/docker-sicer latest

qdidiscoveryservices/limma-voom 4.2.0

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

dhspence/docker-basestation latest

qdidiscoveryservices/py3_cellranger 6.1.2

veitveit/complexbrowser release-1.6

austinhpatton123/r-4.2.2_uniprot.ws 2.38.0

mirekphd/ml-cpu-r35-jnb devel_2b2752c

dhspence/docker-dss latest

hoonbiolab/align_dna v1.3

tercen/runtime-flowsuite 3.15-4

cimendes/splicing-pipelines-nf 3.1.ubuntu

dhspence/docker-ichor latest

koki/sctensor-experiments 20220208

evolbioinfo/deseq2 v1.28.1

qdidiscoveryservices/scrna_downstream 1.1

recetox/ramclustr 1.1.0-recetox0

koki/biocdev 20230818

anand7899/rmarkdown latest

prismcmap/sushi v0.0.2

hoonbiolab/hmftools v1.1

qdidiscoveryservices/bam_to_10x_counts latest

austinhpatton123/cogeqc-1.2.0_r-4.2.2 latest

broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor

pcawg_broad_wgs_variant_callers

chgyi/bio 3.5.1

canaantt/notitia-ocpu latest

This is part of zager/notitia.

broadinstitute/pcawg_full 7

hoonbiolab/hl_base v1.2

chgyi/metaware_rna_denovo latest

mirekphd/ml-cpu-r35-nx devel_fdbf539

dhspence/docker-manta 1.5.0

dmiller15/sequenza 3.0.0

dhspence/docker-hiccompare latest

koki/sctensor-workshop sha-fa8c4cf

atttilacs/dsp_geomxtools latest

atttilacs/seurat_big latest

recetox/recetox-xmsannotator october-conda0

mirekphd/ml-cpu-r35-rdp 20180918

jafoltz/scclassify latest

crukmi/mesa main

testalabgh/downstream signac-1.4.0

veitveit/viqor latest

hoonbiolab/cnvkit v1.1

gene110/reportnipt550 latest

mlepetit/ranalysis 3.3.4

tercen/flowsuite 0.0.4

dolphinnext/ont_variant_calling 1.0

scgfacility/rstudio-course22 v0.11

image used to run the course 2022