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Package Usage : cran : Biobase

Explore the latest package usage data for Biobase in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 711
Total downloads: 3,113,357
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

ccdlstaging/dr_illumina 1.45.8

  • version: 2.38.0
Latest release: over 2 years ago - 6,466 downloads - 893 dependencies
robertplayer/scidap-qiime2 stable

  • version: 2.58.0
Latest release: over 2 years ago - 34 downloads - 527 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 2.54.0
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
btrspg/r-env cache

  • version: 2.60.0
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
koki/urchin_workflow_seurat 20251014

  • version: 2.58.0
Latest release: 3 months ago - 367 downloads - 1,471 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 2.50.0
Latest release: almost 5 years ago - 3,042 downloads - 1,044 dependencies
biocorecrg/trax 0.2

  • version: 2.50.0
Latest release: over 2 years ago - 38 downloads - 296 dependencies
veitveit/coexpresso 0d86fb51b4b4cdc9a21ad900ae0f30e1eb9e828f

  • version: 2.54.0
Latest release: 5 months ago - 449 downloads - 1,733 dependencies
koki/tensor-projects-parasite 20220819

  • version: 2.56.0
Latest release: over 3 years ago - 91 downloads - 1,281 dependencies
tercen/opencyto_operator 0.2.0

  • version: 2.50.0
Latest release: almost 4 years ago - 71 downloads - 1,514 dependencies
biodancer/nasap_performance latest

write later

  • version: 2.54.0
Latest release: about 3 years ago - 119 downloads - 2,006 dependencies
mlepetit/ranalysis 3.3.4

  • version: 2.52.0
Latest release: about 3 years ago - 221 downloads - 2,131 dependencies
veitveit/compomicsworkflow dev

  • version: 2.50.0
Latest release: about 5 years ago - 99 downloads - 537 dependencies
prismcmap/biomarker 4602f53feb5a

  • version: 2.50.0
Latest release: 11 months ago - 10,896 downloads - 633 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 2.58.0
Latest release: about 3 years ago - 90 downloads - 494 dependencies
afcai2c/r-studio-aiml latest

  • version: 2.43.1
Latest release: over 3 years ago - 81 downloads - 1,442 dependencies
btrspg/genekitr 0.0.1

  • version: 2.60.0
Latest release: over 1 year ago - 204 downloads - 1,987 dependencies
eppicenter/mad4hatter sha-cb4911b

  • version: 2.60.0
Latest release: 4 months ago - 821 downloads - 739 dependencies
prismcmap/sushi v0.0.2

  • version: 2.50.0
Latest release: about 4 years ago - 1,518 downloads - 723 dependencies
weizhoujp/rchtc 4.3.0

  • version: 2.60.0
Latest release: over 2 years ago - 141 downloads - 738 dependencies
luisas/rannotation_forcats latest

  • version: 2.46.0
Latest release: over 5 years ago - 46 downloads - 89 dependencies
globusgenomics/picrust 1.0

  • version: 2.54.0
Latest release: almost 3 years ago - 130 downloads - 595 dependencies
tercen/xshift 0.0.6

  • version: 2.50.0
Latest release: over 4 years ago - 66 downloads - 826 dependencies
hoonbiolab/hmftools v1.1

  • version: 2.52.0
Latest release: over 4 years ago - 1,322 downloads - 693 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 2.56.0
Latest release: almost 3 years ago - 149 downloads - 512 dependencies
intelliseqngs/bioconductor r-coverage-stats_v0.1

  • version: 2.46.0
Latest release: about 6 years ago - 27 downloads - 185 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: 2.38.0
Latest release: over 2 years ago - 95,753 downloads - 1,220 dependencies
tariship/dev_sync_directories latest

  • version: 2.58.0
Latest release: over 2 years ago - 396 downloads - 421 dependencies
andimajore/unpast_eval_container_asthma latest

  • version: 2.38.0, 2.58.0
Latest release: over 2 years ago - 142 downloads - 486 dependencies
crukcibioinformatics/sequencingbase 9.5.4

  • version: 2.66.0
Latest release: about 2 months ago - 407 downloads - 1,183 dependencies
almahmoud/workshops-auto-spectratutorials latest

  • version: 2.57.0
Latest release: over 3 years ago - 89 downloads - 2,003 dependencies
hdsu/etbii2023 latest

  • version: 2.54.0
Latest release: about 3 years ago - 138 downloads - 358 dependencies
nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 2.52.0
Latest release: over 4 years ago - 95,358 downloads - 297 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 2.58.0
Latest release: about 3 years ago - 195 downloads - 382 dependencies
prismcmap/base-clue-pseq v0.0.1

  • version: 2.50.0
Latest release: about 4 years ago - 116 downloads - 318 dependencies
cheyne0328/rstudio zxy

  • version: 2.60.0
Latest release: over 2 years ago - 24 downloads - 775 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 2.40.0
Latest release: over 7 years ago - 443 downloads - 9,302 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: 2.60.0
Latest release: over 2 years ago - 332 downloads - 571 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 2.60.0
Latest release: over 2 years ago - 155 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 2.58.0
Latest release: almost 3 years ago - 98 downloads - 290 dependencies
evolomicsmbbt/rna_seq latest

  • version: 2.54.0
Latest release: about 3 years ago - 162 downloads - 412 dependencies
jpdodson/dsrna_docker latest

  • version: 2.58.0
Latest release: almost 3 years ago - 79 downloads - 208 dependencies
nathanprovin/cellcom 1.2.2

  • version: 2.60.0
Latest release: over 2 years ago - 189 downloads - 596 dependencies
tercen/automated_gating_operator 1.0.3

  • version: 2.56.0
Latest release: almost 2 years ago - 207 downloads - 655 dependencies
tercen/tracksom_operator 0.1.5

  • version: 2.50.0
Latest release: almost 3 years ago - 144 downloads - 760 dependencies
seglh/exomedepth f4716ad

  • version: 2.56.0
Latest release: about 2 years ago - 1,680 downloads - 548 dependencies
raghukirannavipoint/aldex2 mar23

  • version: 2.54.0
Latest release: almost 3 years ago - 121 downloads - 1,548 dependencies
prismcmap/drc MTS028_PMTS079

  • version: 2.50.0
Latest release: 7 months ago - 6,397 downloads - 651 dependencies
zymoresearch/bio_resource_builder v1.0

  • version: 2.58.0
Latest release: over 2 years ago - 22 downloads - 335 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 2.50.0
Latest release: over 2 years ago - 26 downloads - 1,061 dependencies
payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

  • version: 2.54.0
Latest release: about 3 years ago - 81 downloads - 1,943 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 2.46.0
Latest release: about 4 years ago - 110 downloads - 828 dependencies
ipbhalle/biobyte latest

  • version: 2.58.0
Latest release: over 2 years ago - 28 downloads - 1,311 dependencies
chriswyatt/chopgo latest

  • version: 2.54.0
Latest release: over 3 years ago - 47 downloads - 255 dependencies
evolbioinfo/r-sra v3.6.1

  • version: 2.44.0
Latest release: over 6 years ago - 50 downloads - 466 dependencies
robsyme/cosmo latest

  • version: 2.58.0
Latest release: about 3 years ago - 45 downloads - 543 dependencies
qdidiscoveryservices/glimma 4.2.0

  • version: 2.56.0
Latest release: over 3 years ago - 81 downloads - 1,371 dependencies
chriswyatt/svm1071deseq2limma latest

  • version: 2.54.0
Latest release: about 4 years ago - 61 downloads - 327 dependencies
recetox/xmsanalyzer 2.0.6.1-recetox1

  • version: 2.48.0
Latest release: about 5 years ago - 90 downloads - 588 dependencies
js2264/fourdndata 1.1.0

  • version: 2.61.0
Latest release: over 2 years ago - 26 downloads - 1,273 dependencies
qdidiscoveryservices/seurat_cell_annotation latest

  • version: 2.58.0
Latest release: about 3 years ago - 75 downloads - 699 dependencies
mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

  • version: 2.40.0
Latest release: over 7 years ago - 43 downloads - 9,414 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 2.58.0
Latest release: about 3 years ago - 51 downloads - 897 dependencies
koki/velocytor 20221015

  • version: 2.56.0
Latest release: over 3 years ago - 62 downloads - 1,452 dependencies
broadcptac/panoply_so_nmf_report 1_3

  • version: 2.46.0
Latest release: over 2 years ago - 37 downloads - 725 dependencies
koki/workflow 20210327

  • version: 2.50.0
Latest release: almost 5 years ago - 75 downloads - 1,265 dependencies
haileyzhang/phospho-analyst v1.0.2

  • version: 2.58.0
Latest release: almost 2 years ago - 226 downloads - 796 dependencies
jpsmith5/peppro 0.10.2

  • version: 2.58.0
Latest release: about 3 years ago - 102 downloads - 1,163 dependencies
qdidiscoveryservices/bam_to_10x_counts latest

  • version: 2.54.0
Latest release: about 3 years ago - 215 downloads - 962 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 2.59.0
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 2.54.0
Latest release: over 2 years ago - 60 downloads - 2,274 dependencies
qxes4210/mimseq double_result_page

This repo is for the mimseq web tool (tRNA analysis)

  • version: 2.58.0
Latest release: over 2 years ago - 86 downloads - 386 dependencies
biocontainers/bioconductor-rtracklayer v1.34.1-1-deb_cv1

  • version: 2.34.0
Latest release: over 7 years ago - 193 downloads - 427 dependencies
omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 2.60.0
Latest release: 2 months ago - 1,916 downloads - 1,420 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 2.55.0
Latest release: about 4 years ago - 45 downloads - 2,335 dependencies
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1

  • version: 2.34.0
Latest release: over 7 years ago - 165 downloads - 572 dependencies
biocontainers/bioconductor-deseq2 v1.14.1-1-deb_cv1

  • version: 2.34.0
Latest release: over 7 years ago - 172 downloads - 523 dependencies
chgyi/bio 3.5.1

  • version: 2.40.0
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
tercen/compare_means_operator 0.1.9

  • version: 2.56.0
Latest release: over 2 years ago - 196 downloads - 559 dependencies
canaantt/notitia-ocpu latest

This is part of zager/notitia.

  • version: 2.38.0
Latest release: about 8 years ago - 166 downloads - 633 dependencies
commander121/rmarkdown 4.4.0d-b4

  • version: 2.60.0
Latest release: 11 months ago - 930 downloads - 1,625 dependencies
prismcmap/normalization APS005_BIAS_CORRECTED

  • version: 2.50.0
Latest release: 2 months ago - 1,341 downloads - 627 dependencies
koki/bindsc 20220609

  • version: 2.56.0
Latest release: over 3 years ago - 52 downloads - 2,060 dependencies
benolson/r_dada2_for_ris latest

  • version: 2.58.0
Latest release: over 2 years ago - 43 downloads - 657 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 2.58.0
Latest release: about 2 years ago - 392 downloads - 1,496 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 2.50.0
Latest release: over 2 years ago - 303 downloads - 1,173 dependencies
tercen/faust_operator 0.1.4

  • version: 2.56.0
Latest release: almost 2 years ago - 218 downloads - 992 dependencies
biocontainers/bioconductor-summarizedexperiment v1.4.0-2-deb_cv1

  • version: 2.34.0
Latest release: over 7 years ago - 169 downloads - 407 dependencies
biocontainers/bioconductor-altcdfenvs v1-2.36.0-1-deb_cv1

  • version: 2.34.0
Latest release: over 7 years ago - 147 downloads - 415 dependencies
biocontainers/bioconductor-phyloseq v1.19.1-2-deb_cv1

  • version: 2.34.0
Latest release: over 7 years ago - 151 downloads - 485 dependencies
tercen/diffcyt_operator 0.4.4

  • version: 2.56.0
Latest release: almost 2 years ago - 135 downloads - 1,563 dependencies
biocontainers/bioconductor-metagenomeseq v1.16.0-2-deb_cv1

  • version: 2.34.0
Latest release: over 7 years ago - 148 downloads - 417 dependencies
biocontainers/bioconductor-genomicfeatures v1.26.2-1-deb_cv1

  • version: 2.34.0
Latest release: over 7 years ago - 147 downloads - 453 dependencies
mfsentma/atacseq latest

  • version: 2.54.0
Latest release: almost 3 years ago - 34 downloads - 852 dependencies
andrewrrelmore/genepi_vscode test

  • version: 2.58.0
Latest release: over 2 years ago - 48 downloads - 1,188 dependencies
biocontainers/bioconductor-annotationhub v2.6.4-1-deb_cv1

  • version: 2.34.0
Latest release: over 7 years ago - 152 downloads - 459 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 2.58.0
Latest release: almost 3 years ago - 687 downloads - 1,367 dependencies
biocontainers/bioconductor-genefilter v1.56.0-1-deb_cv1

  • version: 2.34.0
Latest release: over 7 years ago - 153 downloads - 428 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 2.58.0
Latest release: almost 3 years ago - 201 downloads - 752 dependencies