Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
Package Usage : cran : Biobase
Explore the latest package usage data for Biobase in the cran ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 711
Total downloads: 3,113,357
More details on packages.ecosyste.ms - JSON
veupathdb/rserve 7
- version: 2.58.0
ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 2.38.0
broadinstitute/gtex_eqtl V10
GTEx Consortium: eQTL pipeline based on FastQTL
- version: 2.38.0
broadinstitute/terra-jupyter-aou 8bf6b13
- version: 2.54.0, 2.58.0
ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30
- version: 2.38.0
nfcore/methylseq dev
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.
- version: 2.52.0
ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30
- version: 2.38.0
nfcore/atacseq latest
A Docker container for the nf-core/atacseq pipeline.
- version: 2.46.0
biocontainers/control-freec v11.5_cv1
- version: 2.32.0
nfcore/chipseq dev
A docker image for nf-core/chipseq
- version: 2.48.0
180a51c0/gh-action-buildapp latest
- version: 2.43.1
dhspence/docker-basespace_chromoseq latest
- version: 2.44.0
nfcore/eager 2.5.0
A Docker image for the nf-core/eager pipeline.
- version: 2.50.0
mirekphd/ml-cpu-r40-rs-cust 20230912
- version: 2.60.0
dhspence/docker-genomic-analysis 122121
From Chris Miller's example
- version: 2.46.0
mirekphd/ml-cpu-r36-rs-cust latest
- version: 2.56.0
ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 2.38.0
vanallenlab/sv-pipeline filter_gt_029fa3b
- version: 2.54.0
nfcore/ampliseq dev
A Docker image for nf-core/ampliseq.
- version: 2.42.0
mirekphd/ml-cpu-r36-base latest
- version: 2.56.0
kbase/kbase sdkbase.latest
- version: 2.22.0
biocontainers/isee-galaxy v3.13_cv1.0.0
- version: 2.53.0
ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 2.38.0
qdidiscoveryservices/ms_pipeline latest
- version: 2.50.0
ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 2.38.0
patroonorg/patroondeps latest
- version: 2.58.0
dhspence/docker-biscuit latest
- version: 2.40.0
ccdlstaging/dr_compendia 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 2.38.0
nfcore/smartseq2 dev
A docker container for the nf-core/smartseq2 pipeline.
- version: 2.50.0
nfcore/airrflowreport dev
- version: 2.58.0
biocontainers/ipo develop
A Tool for automated Optimization of XCMS Parameters
- version: 2.38.0
nfcore/circrna dev
Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.
- version: 2.46.0
nfcore/sarek 2.7.2
A Docker container for the nf-core/sarek pipeline
- version: 2.50.0
nfcore/slamseq dev
A docker image for nf-core/slamseq
- version: 2.42.0
nfcore/hic dev
A docker container for the nf-core/hic pipeline.
- version: 2.48.0
nfcore/nanoseq dev
Nanopore demultiplexing, QC and alignment pipeline
- version: 2.50.0
nfcore/scrnaseq dev
A Docker Container for the nf-core/scrnaseq pipeline.
- version: 2.46.0
nfcore/diaproteomics dev
A Docker container for nf-core/diaproteomics
- version: 2.50.0
mirekphd/ml-cpu-r35-rs 20190201
- version: 2.42.0, 2.40.0
veitveit/isolabeledprotocol latest
Discontinued, see github.com/ProtProtocols/IsoProt for updates
- version: 2.38.0
prismcmap/depmap_versions dd55695d58fb
- version: 2.50.0
dhspence/docker-homer latest
docker with chip-seq tool homer
- version: 2.40.0
nfcore/exoseq dev
A docker container for the ExoSeq pipeline
- version: 2.40.0
nfcore/lncpipe dev
A Docker image for nf-core/lncpipe
- version: 2.40.0
seglh/exomedepth f4716ad
- version: 2.56.0
gene110/nipt_report latest
- version: 2.38.0
kbase/kbase_base latest
KBase Base Image containing Core services and runtime
- version: 2.22.0
kbase/sdkbase latest
- version: 2.22.0
prismcmap/drc-module robust_DRC
- version: 2.50.0
veitveit/vsclust release-1.2.1
For more details, see https://bitbucket.org/veitveit/vsclust
- version: 2.58.0
dhspence/docker-sicer latest
- version: 2.40.0
qdidiscoveryservices/limma-voom 4.2.0
- version: 2.56.0
recetox/aplcms latest
- version: 2.48.0
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2
- version: 2.54.0
prismcmap/norm-module 26be7aa8ab48
- version: 2.50.0
dhspence/docker-basestation latest
- version: 2.40.0
qdidiscoveryservices/py3_cellranger 6.1.2
- version: 2.48.0
veitveit/complexbrowser release-1.6
- version: 2.58.0, 2.62.0
austinhpatton123/r-4.2.2_uniprot.ws 2.38.0
- version: 2.58.0
mirekphd/ml-cpu-r35-jnb devel_2b2752c
- version: 2.40.0
dhspence/docker-dss latest
- version: 2.46.0
tercen/flowsom 0.2.3
- version: 2.50.0
koki/pagoda latest
- version: 2.36.2
biocontainers/bioconductor-cummerbund v2.16.0-2-deb_cv1
- version: 2.34.0
biocontainers/bioconductor-bsgenome v1.42.0-2-deb_cv1
- version: 2.34.0
biocontainers/bioconductor-affy v1.52.0-1-deb_cv1
- version: 2.34.0
biocontainers/bioconductor-variantannotation v1.20.2-1b1-deb_cv1
- version: 2.34.0
biocontainers/bioconductor-biobase v2.34.0-1-deb_cv1
- version: 2.34.0
biocontainers/bioconductor-ensembldb v1.6.2-1-deb_cv1
- version: 2.34.0
recetox/waveica 0.1.0-recetox0
- version: 2.43.1
biocontainers/bioconductor-shortread v1.32.0-1b1-deb_cv1
- version: 2.34.0
biocontainers/bioconductor-biomart v2.30.0-1-deb_cv1
- version: 2.34.0
tercen/runtime-flowsuite 3.15-4
- version: 2.56.0
cimendes/splicing-pipelines-nf 3.1.ubuntu
- version: 2.52.0
biocontainers/bioconductor-makecdfenv v1.50.0-1-deb_cv1
- version: 2.34.0
dhspence/docker-ichor latest
- version: 2.40.0
biocontainers/bioconductor-annotate v1.52.1dfsg-1-deb_cv1
- version: 2.34.0
biocontainers/bioconductor-genomicalignments v1.10.0-1b1-deb_cv1
- version: 2.34.0
biocontainers/bioconductor-multtest v2.30.0-1-deb_cv1
- version: 2.34.0
biocontainers/bioconductor-biovizbase v1.22.0-2-deb_cv1
- version: 2.34.0
biocontainers/bioconductor-go.db v3.4.0-1-deb_cv1
- version: 2.34.0
biocontainers/bioconductor-geneplotter v1.52.0-2-deb_cv1
- version: 2.34.0
koki/sctensor-experiments 20220208
- version: 2.54.0
evolbioinfo/deseq2 v1.28.1
- version: 2.48.0