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Package Usage : cran : BiocFileCache

Explore the latest package usage data for BiocFileCache in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 255
Total downloads: 190,367

More details on packages.ecosyste.ms - JSON

broadinstitute/terra-jupyter-aou 2.1.13

  • version: 2.6.0
Latest release: over 2 years ago - 96,569 downloads - 4,112 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 2.8.0
Latest release: almost 2 years ago - 28,089 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.10.2
Latest release: over 3 years ago - 19,986 downloads - 1,294 dependencies
biocontainers/isee-galaxy v3.13_cv1.0.0

  • version: 2.1.1
Latest release: almost 4 years ago - 3,681 downloads - 1,218 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 1.14.0
Latest release: over 4 years ago - 3,042 downloads - 1,044 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 1.10.0
Latest release: almost 3 years ago - 1,269 downloads - 654 dependencies
nfcore/nanoseq 1.1.0

Nanopore demultiplexing, QC and alignment pipeline

  • version: 1.14.0
Latest release: over 4 years ago - 9,754 downloads - 340 dependencies
nfcore/scrnaseq 1.1.0

A Docker Container for the nf-core/scrnaseq pipeline.

  • version: 1.10.0
Latest release: over 4 years ago - 7,851 downloads - 423 dependencies
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 2.2.1
Latest release: over 1 year ago - 3,981 downloads - 1,464 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 1.12.0
Latest release: over 3 years ago - 343 downloads - 1,375 dependencies
veitveit/complexbrowser release-1.6

  • version: 2.6.0, 2.10.1
Latest release: over 1 year ago - 679 downloads - 1,296 dependencies
austinhpatton123/r-4.2.2_uniprot.ws 2.38.0

  • version: 2.6.0
Latest release: over 2 years ago - 291 downloads - 381 dependencies
dhspence/docker-dss latest

  • version: 1.10.2
Latest release: almost 5 years ago - 392 downloads - 1,127 dependencies
koki/sctensor-experiments 20220208

  • version: 2.2.1
Latest release: over 3 years ago - 259 downloads - 2,071 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 2.0.0
Latest release: over 3 years ago - 426 downloads - 1,716 dependencies
koki/biocdev 20230818

  • version: 2.9.1
Latest release: almost 2 years ago - 301 downloads - 1,504 dependencies
anand7899/rmarkdown latest

  • version: 2.6.0
Latest release: over 2 years ago - 268 downloads - 766 dependencies
hoonbiolab/hmftools v1.1

  • version: 2.0.0
Latest release: almost 4 years ago - 1,318 downloads - 693 dependencies
dhspence/docker-hiccompare latest

  • version: 1.10.2
Latest release: about 4 years ago - 126 downloads - 1,271 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 2.1.1
Latest release: almost 4 years ago - 169 downloads - 2,087 dependencies
crukmi/mesa main

  • version: 2.5.0
Latest release: almost 3 years ago - 162 downloads - 1,326 dependencies
testalabgh/downstream signac-1.4.0

  • version: 2.2.1
Latest release: over 2 years ago - 485 downloads - 3,517 dependencies
mlepetit/ranalysis 3.3.4

  • version: 2.0.0
Latest release: over 2 years ago - 221 downloads - 2,131 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 2.6.0
Latest release: over 2 years ago - 149 downloads - 382 dependencies
chriswyatt/goatee_biomart latest

  • version: 2.2.0
Latest release: over 3 years ago - 112 downloads - 229 dependencies
koki/rstudio_mesh latest

  • version: 2.3.0
Latest release: over 3 years ago - 163 downloads - 1,389 dependencies
koki/annotationhub 20210323

  • version: 1.14.0
Latest release: over 4 years ago - 120 downloads - 1,250 dependencies
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520

  • version: 1.10.2
Latest release: over 5 years ago - 62 downloads - 1,313 dependencies
tipsarin/rstudio 4.1.3

  • version: 2.2.1
Latest release: almost 3 years ago - 60 downloads - 981 dependencies
lorentzb/gene8940_r 1.0

  • version: 2.6.0
Latest release: over 2 years ago - 68 downloads - 926 dependencies
doejgi/trinityrnaseq-wdl 2.15.1

  • version: 1.10.2, 2.6.0
Latest release: over 2 years ago - 798 downloads - 980 dependencies
maestsi/nf-m6anet v1

  • version: 1.14.0
Latest release: over 2 years ago - 100 downloads - 645 dependencies
khoulaha/jabba v1.0.0

  • version: 2.6.0
Latest release: over 2 years ago - 68 downloads - 2,527 dependencies
koki/tensor-projects-machima 20220827

  • version: 2.4.0
Latest release: almost 3 years ago - 120 downloads - 1,441 dependencies
hoonbiolab/pepatac v1.1

  • version: 2.0.0
Latest release: almost 4 years ago - 70 downloads - 1,213 dependencies
crukmi/mesa_dependencies latest

  • version: 2.6.1
Latest release: over 2 years ago - 76 downloads - 1,393 dependencies
broadcptacdev/panoply_so_nmf_report 9bb503e

  • version: 1.10.2
Latest release: over 2 years ago - 107 downloads - 725 dependencies
trust1/rbox v1

Methylation array work toolbox

  • version: 1.14.0
Latest release: about 2 years ago - 59 downloads - 912 dependencies
veitveit/coexpresso 043527a8a979ac9177aad9812bc433e299ae3a9b

  • version: 2.2.1
Latest release: 11 months ago - 358 downloads - 1,733 dependencies
austinhpatton123/uniprotws_2.38.1 0.0.1

  • version: 2.6.1
Latest release: over 2 years ago - 48 downloads - 580 dependencies
dmiller15/minfi 4.2.0

  • version: 2.4.0
Latest release: about 3 years ago - 69 downloads - 1,415 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 1.10.2
Latest release: almost 4 years ago - 108 downloads - 828 dependencies
robsyme/cosmo latest

  • version: 2.6.0
Latest release: over 2 years ago - 40 downloads - 543 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 2.6.0
Latest release: over 2 years ago - 50 downloads - 897 dependencies
koki/velocytor 20221015

  • version: 2.4.0
Latest release: almost 3 years ago - 58 downloads - 1,452 dependencies
koki/workflow 20210327

  • version: 1.14.0
Latest release: over 4 years ago - 66 downloads - 1,265 dependencies
jpsmith5/peppro 0.10.2

  • version: 2.6.0
Latest release: over 2 years ago - 69 downloads - 1,163 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 2.7.1
Latest release: over 2 years ago - 106 downloads - 1,601 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 2.3.0
Latest release: over 3 years ago - 44 downloads - 2,335 dependencies
hoonbiolab/titan v1.1

  • version: 1.10.2
Latest release: almost 4 years ago - 46 downloads - 754 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 2.6.1
Latest release: over 1 year ago - 259 downloads - 1,496 dependencies
keithgraham5/cnvrobot_v4_2 latest

  • version: 1.10.0
Latest release: over 2 years ago - 26 downloads - 685 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 2.0.0
Latest release: over 2 years ago - 61 downloads - 2,142 dependencies
sheddn/bioinformatics-tools latest

  • version: 2.2.1
Latest release: over 2 years ago - 54 downloads - 2,518 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 2.8.0
Latest release: 10 months ago - 861 downloads - 6,961 dependencies
biodancer/nasap_performance latest

write later

  • version: 2.2.0
Latest release: over 2 years ago - 83 downloads - 2,006 dependencies
mbaardwijk/hmftools latest

  • version: 2.2.0
Latest release: over 2 years ago - 44 downloads - 405 dependencies
haileyzhang/fragpipe-analyst v1.11

A Docker container of Fragpipe-Analyst

  • version: 2.6.1
Latest release: 5 months ago - 197 downloads - 1,511 dependencies
yiluxiangbei/pumpkin-genomealign-notebook 1.0

  • version: 2.2.0
Latest release: over 3 years ago - 25 downloads - 2,028 dependencies
yiluxiangbei/pumpkin-gene-genomealign 20220216

  • version: 2.2.0
Latest release: over 3 years ago - 29 downloads - 2,116 dependencies
gnwanne/decontx latest

  • version: 2.6.0
Latest release: over 2 years ago - 49 downloads - 938 dependencies
entsupml/r-with-libraries latest

  • version: 2.6.0
Latest release: over 2 years ago - 84 downloads - 992 dependencies
qdidiscoveryservices/ubuntu-1604-pipeline_docker-r_and_bioconductor latest

  • version: 1.10.2
Latest release: almost 5 years ago - 13 downloads - 1,153 dependencies
skoyamamd/scoreinvhap latest

  • version: 2.2.1
Latest release: about 3 years ago - 29 downloads - 662 dependencies
dhspence/docker-wg-basestation latest

  • version: 1.10.2
Latest release: over 4 years ago - 53 downloads - 1,126 dependencies
lemoniada/test pipeline

  • version: 2.6.0
Latest release: over 2 years ago - 107 downloads - 1,181 dependencies
hoonbiolab/chromothripsis v1.0

  • version: 2.2.1
Latest release: over 3 years ago - 34 downloads - 505 dependencies
qdidiscoveryservices/sc_pip_r_and_py latest

  • version: 1.14.0
Latest release: over 4 years ago - 14 downloads - 1,097 dependencies
intelliseqngs/bioconductor r-coverage-stats_v0.1

  • version: 1.10.0
Latest release: over 5 years ago - 22 downloads - 185 dependencies
kisudsoe/r-base latest

  • version: 2.6.1
Latest release: over 2 years ago - 127 downloads - 1,107 dependencies
haileyzhang/phospho-analyst v1.0.2

  • version: 2.6.1
Latest release: over 1 year ago - 183 downloads - 796 dependencies
broadcptacdev/activedriver latest

  • version: 1.10.2
Latest release: over 2 years ago - 91 downloads - 720 dependencies
mtorresm55/r_env_4_1_0 v1.0

  • version: 2.2.0
Latest release: over 2 years ago - 23 downloads - 354 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 2.6.0
Latest release: over 2 years ago - 25 downloads - 598 dependencies
bioconductor/ismb.osca 124cbc0

  • version: 2.8.0
Latest release: about 2 years ago - 603 downloads - 1,422 dependencies
jpsmith5/rpipe 0.3.1

  • version: 2.6.0
Latest release: over 2 years ago - 43 downloads - 262 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 1.14.0
Latest release: over 4 years ago - 13 downloads - 435 dependencies
alexthiery/archr 3.1

  • version: 2.2.1
Latest release: about 2 years ago - 186 downloads - 819 dependencies
abelean/seurat_azimuth 5.0.1

  • version: 2.2.1
Latest release: over 1 year ago - 1,367 downloads - 1,141 dependencies
markataylor/r_yufree v1.0.0

  • version: 2.6.0
Latest release: over 2 years ago - 27 downloads - 1,514 dependencies
sparktx/gviz 1.40.1

  • version: 2.4.0
Latest release: over 2 years ago - 30 downloads - 288 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 1.10.2
Latest release: almost 5 years ago - 10 downloads - 431 dependencies
edkang0925/diffutr latest

  • version: 2.6.1
Latest release: over 2 years ago - 44 downloads - 532 dependencies
bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

  • version: 2.6.0, 2.8.0
Latest release: over 1 year ago - 110 downloads - 1,150 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 2.6.0
Latest release: over 2 years ago - 20 downloads - 598 dependencies
philipp02/pathway v1

  • version: 2.7.0
Latest release: over 2 years ago - 25 downloads - 345 dependencies
stormgod/deepmaps-cpu latest

  • version: 2.6.1
Latest release: over 2 years ago - 67 downloads - 1,710 dependencies
sameetmehta/docker_report_apptainer devel

  • version: 2.8.0
Latest release: about 2 years ago - 20 downloads - 352 dependencies
am5747/methylation latest

  • version: 2.6.1
Latest release: over 2 years ago - 30 downloads - 290 dependencies
weishwu/planet 12052022

  • version: 2.4.0
Latest release: over 2 years ago - 29 downloads - 341 dependencies
apollodorus/polyglot v1

  • version: 2.6.0
Latest release: over 2 years ago - 54 downloads - 428 dependencies
hoonbiolab/hmftools_purple v3.7.2

  • version: 2.6.0
Latest release: over 2 years ago - 17 downloads - 270 dependencies
crukmi/liana 0.1.9

  • version: 2.6.0
Latest release: over 2 years ago - 34 downloads - 287 dependencies