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Package Usage : cran : BiocFileCache

Explore the latest package usage data for BiocFileCache in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 255
Total downloads: 190,367
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 2.2.1
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
btrspg/r-env cache

  • version: 2.8.0
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
qdidiscoveryservices/ms_pipeline latest

  • version: 1.14.0
Latest release: almost 5 years ago - 3,042 downloads - 1,044 dependencies
veitveit/coexpresso 0d86fb51b4b4cdc9a21ad900ae0f30e1eb9e828f

  • version: 2.2.1
Latest release: 4 months ago - 443 downloads - 1,733 dependencies
biodancer/nasap_performance latest

write later

  • version: 2.2.0
Latest release: about 3 years ago - 119 downloads - 2,006 dependencies
mlepetit/ranalysis 3.3.4

  • version: 2.0.0
Latest release: about 3 years ago - 221 downloads - 2,131 dependencies
hoonbiolab/hmftools v1.1

  • version: 2.0.0
Latest release: over 4 years ago - 1,322 downloads - 693 dependencies
intelliseqngs/bioconductor r-coverage-stats_v0.1

  • version: 1.10.0
Latest release: about 6 years ago - 27 downloads - 185 dependencies
tariship/dev_sync_directories latest

  • version: 2.6.1
Latest release: over 2 years ago - 396 downloads - 421 dependencies
scgfacility/rstudio-course22 v0.11

image used to run the course 2022

  • version: 2.6.0
Latest release: about 3 years ago - 194 downloads - 382 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 2.8.0
Latest release: over 2 years ago - 155 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 2.6.1
Latest release: almost 3 years ago - 98 downloads - 290 dependencies
jpdodson/dsrna_docker latest

  • version: 2.6.0
Latest release: almost 3 years ago - 79 downloads - 208 dependencies
nathanprovin/cellcom 1.2.2

  • version: 2.8.0
Latest release: over 2 years ago - 175 downloads - 596 dependencies
payne6861/stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca v1.0.0

stereonote_non_conda_scmerge_seurat_harmony_batchelor_cca

  • version: 2.2.1
Latest release: about 3 years ago - 81 downloads - 1,943 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 1.10.2
Latest release: about 4 years ago - 110 downloads - 828 dependencies
robsyme/cosmo latest

  • version: 2.6.0
Latest release: about 3 years ago - 45 downloads - 543 dependencies
js2264/fourdndata 1.1.0

  • version: 2.9.0
Latest release: over 2 years ago - 26 downloads - 1,273 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 2.6.0
Latest release: about 3 years ago - 51 downloads - 897 dependencies
koki/velocytor 20221015

  • version: 2.4.0
Latest release: about 3 years ago - 62 downloads - 1,452 dependencies
broadcptac/panoply_so_nmf_report 1_3

  • version: 1.10.2
Latest release: over 2 years ago - 37 downloads - 725 dependencies
koki/workflow 20210327

  • version: 1.14.0
Latest release: almost 5 years ago - 75 downloads - 1,265 dependencies
haileyzhang/phospho-analyst v1.0.2

  • version: 2.6.1
Latest release: almost 2 years ago - 226 downloads - 796 dependencies
jpsmith5/peppro 0.10.2

  • version: 2.6.0
Latest release: about 3 years ago - 102 downloads - 1,163 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 2.7.1
Latest release: about 3 years ago - 116 downloads - 1,601 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 2.2.0
Latest release: over 2 years ago - 60 downloads - 2,274 dependencies
omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 2.8.0
Latest release: 2 months ago - 1,916 downloads - 1,420 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 2.3.0
Latest release: about 4 years ago - 45 downloads - 2,335 dependencies
commander121/rmarkdown 4.4.0d-b4

  • version: 2.8.0
Latest release: 10 months ago - 930 downloads - 1,625 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 2.6.1
Latest release: about 2 years ago - 392 downloads - 1,496 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 1.14.0
Latest release: over 2 years ago - 303 downloads - 1,173 dependencies
mfsentma/atacseq latest

  • version: 2.2.1
Latest release: almost 3 years ago - 34 downloads - 852 dependencies
andrewrrelmore/genepi_vscode test

  • version: 2.6.1
Latest release: over 2 years ago - 48 downloads - 1,188 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 2.6.1
Latest release: over 2 years ago - 417 downloads - 1,367 dependencies
alexthiery/archr 3.1

  • version: 2.2.1
Latest release: over 2 years ago - 238 downloads - 819 dependencies
smemane20/error_thres_amd_64 latest

  • version: 2.8.0
Latest release: over 2 years ago - 21 downloads - 618 dependencies
fallingstar10/hbsigrocker latest

  • version: 2.8.0
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 2.6.0
Latest release: almost 3 years ago - 22 downloads - 2,271 dependencies
alexthiery/schelper seurat-schelper-0.3.5

  • version: 1.14.0
Latest release: over 2 years ago - 389 downloads - 1,494 dependencies
mlepetit/rnormalisation 1.0.0

  • version: 2.0.0
Latest release: about 3 years ago - 94 downloads - 2,142 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 1.14.0
Latest release: almost 3 years ago - 77 downloads - 293 dependencies
almurphy/mungesumstats latest

  • version: 2.9.0
Latest release: over 2 years ago - 109 downloads - 265 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 2.6.0
Latest release: about 3 years ago - 33 downloads - 598 dependencies
broadcptacdev/activedriver_mimp latest

  • version: 1.10.2
Latest release: almost 3 years ago - 92 downloads - 374 dependencies
indraniel/chip-pipeline-annotation v1

  • version: 2.6.1
Latest release: over 2 years ago - 291 downloads - 218 dependencies
khoulaha/shatterseek v1.0.0

  • version: 1.14.0
Latest release: almost 3 years ago - 28 downloads - 664 dependencies
jpsmith5/rpipe 0.3.1

  • version: 2.6.0
Latest release: about 3 years ago - 69 downloads - 262 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 2.6.1
Latest release: 8 months ago - 2,648 downloads - 757 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 1.14.0
Latest release: almost 5 years ago - 13 downloads - 435 dependencies
maxellpwilson/r-transcript-table latest

  • version: 2.8.0
Latest release: over 2 years ago - 80 downloads - 269 dependencies
gyusikhwang/tgs v1

  • version: 2.2.1
Latest release: almost 3 years ago - 58 downloads - 1,095 dependencies
alexsickler/open-pedcan latest

  • version: 1.10.2
Latest release: almost 3 years ago - 219 downloads - 864 dependencies
broadcptac/panoply_so_nmf_sankey_report DEV

  • version: 1.10.2
Latest release: over 2 years ago - 74 downloads - 383 dependencies
sparktx/gviz 1.40.1

  • version: 2.4.0
Latest release: about 3 years ago - 34 downloads - 288 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 1.10.2
Latest release: about 5 years ago - 10 downloads - 431 dependencies
mknudson/share_task_cell_annotation mei-cell-annotation

  • version: 2.2.1
Latest release: over 2 years ago - 158 downloads - 316 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 2.6.0
Latest release: about 3 years ago - 22 downloads - 598 dependencies
philipp02/pathway v1

  • version: 2.7.0
Latest release: about 3 years ago - 34 downloads - 345 dependencies
brusconi/seurat new

  • version: 2.8.0
Latest release: over 1 year ago - 146 downloads - 536 dependencies
stormgod/deepmaps-cpu latest

  • version: 2.6.1
Latest release: almost 3 years ago - 114 downloads - 1,710 dependencies
sameetmehta/docker_report_apptainer devel

  • version: 2.8.0
Latest release: over 2 years ago - 26 downloads - 352 dependencies
am5747/methylation latest

  • version: 2.6.1
Latest release: about 3 years ago - 32 downloads - 290 dependencies
weishwu/planet 12052022

  • version: 2.4.0
Latest release: about 3 years ago - 32 downloads - 341 dependencies
apollodorus/polyglot v1

  • version: 2.6.0
Latest release: about 3 years ago - 77 downloads - 428 dependencies
omicschef/epigenomechef v1.1.5

  • version: 2.8.0
Latest release: over 1 year ago - 414 downloads - 1,066 dependencies
nfancy/scflow 0.7.4

  • version: 2.6.1
Latest release: almost 2 years ago - 300 downloads - 778 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 2.2.0
Latest release: over 2 years ago - 67 downloads - 2,387 dependencies
hoonbiolab/hmftools_purple v3.7.2

  • version: 2.6.0
Latest release: about 3 years ago - 18 downloads - 270 dependencies
kdgosik/main-gitpod latest

  • version: 2.6.1
Latest release: almost 3 years ago - 232 downloads - 1,820 dependencies
fluentin55/singlecell_docker 1.2

  • version: 2.6.1
Latest release: almost 3 years ago - 109 downloads - 452 dependencies
crukmi/liana 0.1.9

  • version: 2.6.0
Latest release: almost 3 years ago - 34 downloads - 287 dependencies
hoonbiolab/hmftools_snv v3.2.2

  • version: 2.6.0
Latest release: almost 3 years ago - 25 downloads - 271 dependencies
alexthiery/archr_seurat_signac_mega 3.2

  • version: 2.2.1
Latest release: over 2 years ago - 142 downloads - 441 dependencies
breezykermo/gvis latest

  • version: 1.10.2
Latest release: over 5 years ago - 23 downloads - 1,619 dependencies
scwatts/bolt_gpgr 0.1.0

  • version: 2.2.0
Latest release: over 2 years ago - 54 downloads - 337 dependencies
mfilipuz/r_v423 23.05.09

  • version: 2.6.1
Latest release: over 2 years ago - 46 downloads - 208 dependencies
mhettich0years/r-images v1.1.2

  • version: 2.6.0
Latest release: about 3 years ago - 143 downloads - 334 dependencies
zwcdocker/seurat latest

  • version: 2.0.0
Latest release: about 3 years ago - 23 downloads - 655 dependencies
fgualdr/env_norm_gr_idr latest

  • version: 2.6.0
Latest release: over 2 years ago - 76 downloads - 506 dependencies
hoonbiolab/testbattenberg v1.0

  • version: 1.10.2
Latest release: about 3 years ago - 25 downloads - 325 dependencies
hoonbiolab/clustersv v1.1

  • version: 1.10.2
Latest release: almost 4 years ago - 24 downloads - 718 dependencies
broadcptacdev/activedriver latest

  • version: 1.10.2
Latest release: over 2 years ago - 98 downloads - 720 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 2.6.1
Latest release: over 2 years ago - 207 downloads - 2,089 dependencies
andrewsg/archr dev

  • version: 2.8.0
Latest release: almost 2 years ago - 173 downloads - 1,356 dependencies
muhengliao/r_docker2 genome

  • version: 1.14.0
Latest release: almost 2 years ago - 348 downloads - 515 dependencies
sheddn/bioinformatics-tools latest

  • version: 2.2.1
Latest release: about 3 years ago - 60 downloads - 2,518 dependencies
dhspence/docker-hiccompare latest

  • version: 1.10.2
Latest release: over 4 years ago - 130 downloads - 1,271 dependencies
elynrfw/gerald-test latest

  • version: 2.6.0
Latest release: about 3 years ago - 36 downloads - 349 dependencies
compbiocore/dscov_sct 20221201

  • version: 2.6.0
Latest release: about 3 years ago - 44 downloads - 1,031 dependencies
hoonbiolab/hmftools_linx v1.23.1

  • version: 2.6.0
Latest release: almost 3 years ago - 22 downloads - 988 dependencies
gesiscss/binder-kozo2-2dsakigakemtg2019-214397 c9d150b74c2eb09683e7fadd99703bda92c291cd

  • version: 1.10.2
Latest release: about 6 years ago - 16 downloads - 2,128 dependencies
almahmoud/terra-jupyter bioc

  • version: 2.4.0
Latest release: about 3 years ago - 73 downloads - 2,217 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 2.6.1
Latest release: over 2 years ago - 82 downloads - 1,562 dependencies
compbiocore/lee_isg_erv 20230306

  • version: 2.6.1
Latest release: almost 3 years ago - 13 downloads - 1,038 dependencies
jenfisher7/rstudio_sbae latest

  • version: 2.6.0
Latest release: about 3 years ago - 30 downloads - 1,604 dependencies
bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

  • version: 2.8.0
Latest release: about 2 years ago - 110 downloads - 1,150 dependencies
cbgr/cobind 0.9.1

Necessary software to run COBIND pipeline.

  • version: 2.2.1
Latest release: almost 2 years ago - 204 downloads - 1,369 dependencies
koki/sctensor-workshop sha-fa8c4cf

  • version: 2.1.1
Latest release: about 4 years ago - 200 downloads - 2,087 dependencies
skchronicles/genome-seek_trim_map v0.1.1

Official docker image for trimming and alignment with genome-seek

  • version: 2.6.1
Latest release: about 1 year ago - 510 downloads - 1,367 dependencies
dsouzd04/himc_zellkonverter 1.6.5

  • version: 2.4.0
Latest release: almost 3 years ago - 86 downloads - 953 dependencies