Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : BSgenome

Explore the latest package usage data for BSgenome in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 166
Total downloads: 79,829

More details on packages.ecosyste.ms - JSON

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.54.0
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 1.46.0
Latest release: over 2 years ago - 13,673 downloads - 11,684 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 1.46.0
Latest release: over 2 years ago - 6,685 downloads - 12,259 dependencies
nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

  • version: 1.58.0
Latest release: almost 4 years ago - 9,677 downloads - 340 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 1.46.0
Latest release: almost 6 years ago - 762 downloads - 9,716 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 1.48.0
Latest release: almost 6 years ago - 1,158 downloads - 616 dependencies
dhspence/docker-sicer latest

  • version: 1.48.0
Latest release: almost 6 years ago - 765 downloads - 1,147 dependencies
dhspence/docker-basestation latest

  • version: 1.48.0
Latest release: over 5 years ago - 308 downloads - 1,132 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 1.56.0
Latest release: about 3 years ago - 302 downloads - 1,375 dependencies
dhspence/docker-dss latest

  • version: 1.54.0
Latest release: over 4 years ago - 367 downloads - 1,127 dependencies
biocontainers/bioconductor-cummerbund v2.16.0-2-deb_cv1

  • version: 1.42.0
Latest release: over 6 years ago - 502 downloads - 576 dependencies
biocontainers/bioconductor-bsgenome v1.42.0-2-deb_cv1

  • version: 1.42.0
Latest release: over 6 years ago - 533 downloads - 430 dependencies
biocontainers/bioconductor-variantannotation v1.20.2-1b1-deb_cv1

  • version: 1.42.0
Latest release: over 6 years ago - 529 downloads - 457 dependencies
biocontainers/bioconductor-biovizbase v1.22.0-2-deb_cv1

  • version: 1.42.0
Latest release: over 6 years ago - 477 downloads - 568 dependencies
hoonbiolab/hmftools v1.1

  • version: 1.60.0
Latest release: about 3 years ago - 1,211 downloads - 693 dependencies
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1

  • version: 1.42.0
Latest release: over 6 years ago - 156 downloads - 572 dependencies
chgyi/bio 3.5.1

  • version: 1.48.0
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.48.0
Latest release: almost 6 years ago - 126 downloads - 1,191 dependencies
dhspence/docker-hiccompare latest

  • version: 1.54.0
Latest release: over 3 years ago - 113 downloads - 1,271 dependencies
kcapd/wings-genomics latest

WINGS workflow system with software for genomics operations.

  • version: 1.42.0
Latest release: about 4 years ago - 103 downloads - 1,468 dependencies
mirekphd/ml-cpu-r35-rdp 20180918

  • version: 1.48.0
Latest release: about 6 years ago - 93 downloads - 9,486 dependencies
crukmi/mesa main

  • version: 1.65.2
Latest release: about 2 years ago - 91 downloads - 1,326 dependencies
testalabgh/downstream signac-1.4.0

  • version: 1.62.0
Latest release: over 1 year ago - 485 downloads - 3,517 dependencies
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520

  • version: 1.54.0
Latest release: almost 5 years ago - 55 downloads - 1,313 dependencies
lorentzb/gene8940_r 1.0

  • version: 1.66.1
Latest release: almost 2 years ago - 55 downloads - 926 dependencies
dhspence/docker-vep 93

  • version: 1.48.0
Latest release: over 5 years ago - 53 downloads - 1,191 dependencies
khoulaha/jabba v1.0.0

  • version: 1.66.1
Latest release: almost 2 years ago - 42 downloads - 2,527 dependencies
hoonbiolab/pepatac v1.1

  • version: 1.60.0
Latest release: about 3 years ago - 43 downloads - 1,213 dependencies
crukmi/mesa_dependencies latest

  • version: 1.66.3
Latest release: over 1 year ago - 63 downloads - 1,393 dependencies
kcapd/wings-genomics-full latest

  • version: 1.42.0
Latest release: almost 4 years ago - 33 downloads - 1,502 dependencies
mirekphd/ml-cpu-r36-rs 20200131

  • version: 1.46.0
Latest release: almost 5 years ago - 34 downloads - 10,669 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 1.54.0
Latest release: about 3 years ago - 36 downloads - 828 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 1.66.1
Latest release: almost 2 years ago - 35 downloads - 897 dependencies
jpsmith5/peppro latest

  • version: 1.66.1
Latest release: almost 2 years ago - 29 downloads - 1,163 dependencies
hoonbiolab/titan v1.1

  • version: 1.54.0
Latest release: about 3 years ago - 29 downloads - 754 dependencies
luisas/rfasta latest

  • version: 1.54.0
Latest release: about 4 years ago - 22 downloads - 501 dependencies
keithgraham5/cnvrobot_v4_2 latest

  • version: 1.54.0
Latest release: almost 2 years ago - 21 downloads - 685 dependencies
sheddn/bioinformatics-tools latest

  • version: 1.62.0
Latest release: almost 2 years ago - 41 downloads - 2,518 dependencies
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5

  • version: 1.68.0
Latest release: about 1 year ago - 58 downloads - 6,961 dependencies
biodancer/nasap_performance latest

write later

  • version: 1.62.0
Latest release: almost 2 years ago - 18 downloads - 2,006 dependencies
fgualdr/envrperm latest

  • version: 1.66.1
Latest release: almost 2 years ago - 18 downloads - 480 dependencies
mbaardwijk/hmftools latest

  • version: 1.62.0
Latest release: over 1 year ago - 25 downloads - 405 dependencies
haileyzhang/fragpipe-analyst v0.23

A Docker container of Fragpipe-Analyst

  • version: 1.66.3
Latest release: over 1 year ago - 34 downloads - 1,511 dependencies
gnwanne/decontx latest

  • version: 1.66.1
Latest release: almost 2 years ago - 18 downloads - 938 dependencies
skoyamamd/scoreinvhap latest

  • version: 1.62.0
Latest release: over 2 years ago - 14 downloads - 662 dependencies
dhspence/docker-wg-basestation latest

  • version: 1.54.0
Latest release: about 4 years ago - 13 downloads - 1,126 dependencies
qdidiscoveryservices/sc_pip_r_and_py latest

  • version: 1.58.0
Latest release: almost 4 years ago - 12 downloads - 1,097 dependencies
intelliseqngs/bioconductor r-coverage-stats_v0.1

  • version: 1.54.0
Latest release: almost 5 years ago - 13 downloads - 185 dependencies
kisudsoe/r-base latest

  • version: 1.66.3
Latest release: over 1 year ago - 83 downloads - 1,107 dependencies
mtorresm55/r_env_4_1_0 v1.0

  • version: 1.62.0
Latest release: almost 2 years ago - 14 downloads - 354 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 1.66.1
Latest release: almost 2 years ago - 13 downloads - 598 dependencies
crpeters/r-methylkit 4.2.1

  • version: 1.66.2
Latest release: almost 2 years ago - 12 downloads - 383 dependencies
jpsmith5/rpipe 0.3.1

  • version: 1.66.1
Latest release: almost 2 years ago - 12 downloads - 262 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 1.58.0
Latest release: over 3 years ago - 12 downloads - 435 dependencies
alexthiery/archr 3.1

  • version: 1.62.0
Latest release: over 1 year ago - 133 downloads - 819 dependencies
abelean/seurat_azimuth 5b

  • version: 1.62.0
Latest release: over 1 year ago - 343 downloads - 1,141 dependencies
sparktx/gviz 1.40.1

  • version: 1.64.0
Latest release: almost 2 years ago - 11 downloads - 288 dependencies
bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

  • version: 1.66.2, 1.68.0
Latest release: about 1 year ago - 33 downloads - 1,150 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 1.66.1
Latest release: almost 2 years ago - 10 downloads - 598 dependencies
philipp02/pathway v1

  • version: 1.67.1
Latest release: almost 2 years ago - 10 downloads - 345 dependencies
stormgod/deepmaps-cpu latest

  • version: 1.66.3
Latest release: over 1 year ago - 31 downloads - 1,710 dependencies
apollodorus/polyglot v1

  • version: 1.66.1
Latest release: almost 2 years ago - 10 downloads - 428 dependencies
weishwu/nanomethphase 1.2.0

  • version: 1.56.0
Latest release: almost 2 years ago - 31 downloads - 1,274 dependencies
hoonbiolab/hmftools_purple v3.7.2

  • version: 1.66.1
Latest release: almost 2 years ago - 12 downloads - 270 dependencies
hoonbiolab/hmftools_snv v3.2.2

  • version: 1.66.2
Latest release: almost 2 years ago - 11 downloads - 271 dependencies
breezykermo/gvis latest

  • version: 1.54.0
Latest release: over 4 years ago - 9 downloads - 1,619 dependencies
hoonbiolab/testbattenberg v1.0

  • version: 1.54.0
Latest release: almost 2 years ago - 11 downloads - 325 dependencies
elynrfw/gerald-test latest

  • version: 1.66.1
Latest release: almost 2 years ago - 10 downloads - 349 dependencies
kdgosik/main-gitpod latest

  • version: 1.66.3
Latest release: over 1 year ago - 49 downloads - 1,820 dependencies
duclare123/vizcnv_dev latest

Visualization tool for WGS analysis

  • version: 1.66.3
Latest release: over 1 year ago - 15 downloads - 920 dependencies
gesiscss/binder-ngs-2ddocs-2d2018-2dggg201a-e01a75 18ae0fd4cd73f6d612f276af6afe6fdd663e2724

  • version: 1.54.0
Latest release: almost 5 years ago - 8 downloads - 1,554 dependencies
shashankti/bioc_docker v1

  • version: 1.67.3
Latest release: almost 2 years ago - 7 downloads - 1,350 dependencies
hoonbiolab/clustersv v1.1

  • version: 1.54.0
Latest release: over 2 years ago - 10 downloads - 718 dependencies
kxk302/g4hunter 1.0.0

  • version: 1.66.3
Latest release: almost 2 years ago - 20 downloads - 505 dependencies
hoonbiolab/hmftools_linx v1.23.1

  • version: 1.66.2
Latest release: almost 2 years ago - 10 downloads - 988 dependencies
gesiscss/binder-kozo2-2dsakigakemtg2019-214397 c9d150b74c2eb09683e7fadd99703bda92c291cd

  • version: 1.54.0
Latest release: almost 5 years ago - 8 downloads - 2,128 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 1.66.3
Latest release: over 1 year ago - 15 downloads - 1,562 dependencies
compbiocore/lee_isg_erv 20230306

  • version: 1.66.3
Latest release: over 1 year ago - 8 downloads - 1,038 dependencies
yinxiu/variantalker v2.0

NextFlow pipeline to functionally annotate DNA variants in VCF files

  • version: 1.68.0, 1.66.3
Latest release: over 1 year ago - 119 downloads - 1,068 dependencies
hoonbiolab/hmftools_cnv v3.8.4

  • version: 1.66.2, 1.68.0
Latest release: over 1 year ago - 13 downloads - 985 dependencies
mziemann/meth_analysis latest

Based on BioC release 3.14, this image is designed for analysis of infinium methylation array data

  • version: 1.62.0
Latest release: over 1 year ago - 8 downloads - 1,347 dependencies
hoonbiolab/hmftools_sv v.2.13.2

  • version: 1.66.2
Latest release: almost 2 years ago - 9 downloads - 856 dependencies
jmonlong/terra-rstudio-custom 0.0.1

  • version: 1.66.2
Latest release: almost 2 years ago - 7 downloads - 1,616 dependencies
mdivr/chicago v2

  • version: 1.66.3
Latest release: over 1 year ago - 29 downloads - 645 dependencies
samplix/droplet-viewer-internal latest

  • version: 1.60.0
Latest release: almost 2 years ago - 10 downloads - 568 dependencies
compbiocore/jupyterhub-docker-images-jh_image 20230524

  • version: 1.66.3
Latest release: over 1 year ago - 11 downloads - 3,115 dependencies
weishwu/diffbind 3.6.5

  • version: 1.64.0
Latest release: over 1 year ago - 10 downloads - 1,507 dependencies
wlc27/dcanr v1

  • version: 1.66.2
Latest release: almost 2 years ago - 10 downloads - 1,681 dependencies
fgualdr/env_perm_motifs latest

  • version: 1.66.3
Latest release: over 1 year ago - 10 downloads - 584 dependencies
yaobio/archr-4g latest

Docker images for ArchR (Analysis of Regulatory Chromatin in R)

  • version: 1.62.0
Latest release: over 1 year ago - 11 downloads - 643 dependencies
ericsalomaki/mirna 071723

  • version: 1.62.0
Latest release: over 1 year ago - 10 downloads - 1,834 dependencies
nucleoz/cnvplotr3 latest

  • version: 1.46.0
Latest release: over 1 year ago - 10 downloads - 478 dependencies
winuthayanon/seurat 4.3.0

  • version: 1.66.3
Latest release: over 1 year ago - 15 downloads - 2,660 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 1.62.0
Latest release: over 1 year ago - 9 downloads - 2,274 dependencies
smemane20/error_thres_amd_64 latest

  • version: 1.68.0
Latest release: over 1 year ago - 10 downloads - 618 dependencies