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Package Usage : cran : BSgenome

Explore the latest package usage data for BSgenome in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 166
Total downloads: 79,829
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

btrspg/r-env cache

  • version: 1.68.0
Latest release: 10 months ago - 342 downloads - 2,231 dependencies
biodancer/nasap_performance latest

write later

  • version: 1.62.0
Latest release: about 3 years ago - 119 downloads - 2,006 dependencies
eppicenter/mad4hatter sha-cb4911b

  • version: 1.68.0
Latest release: 4 months ago - 821 downloads - 739 dependencies
hoonbiolab/hmftools v1.1

  • version: 1.60.0
Latest release: over 4 years ago - 1,322 downloads - 693 dependencies
intelliseqngs/bioconductor r-coverage-stats_v0.1

  • version: 1.54.0
Latest release: about 6 years ago - 27 downloads - 185 dependencies
tariship/dev_sync_directories latest

  • version: 1.66.3
Latest release: over 2 years ago - 396 downloads - 421 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 1.68.0
Latest release: over 2 years ago - 160 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 1.66.3
Latest release: almost 3 years ago - 98 downloads - 290 dependencies
zymoresearch/bio_resource_builder v1.0

  • version: 1.66.3
Latest release: over 2 years ago - 22 downloads - 335 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 1.54.0
Latest release: over 4 years ago - 110 downloads - 828 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 1.66.1
Latest release: about 3 years ago - 51 downloads - 897 dependencies
jpsmith5/peppro 0.10.2

  • version: 1.66.1
Latest release: about 3 years ago - 102 downloads - 1,163 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 1.62.0
Latest release: almost 3 years ago - 60 downloads - 2,274 dependencies
omicschef/rnaseqchef v1.1.6

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 1.68.0
Latest release: 3 months ago - 1,916 downloads - 1,420 dependencies
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1

  • version: 1.42.0
Latest release: over 7 years ago - 165 downloads - 572 dependencies
chgyi/bio 3.5.1

  • version: 1.48.0
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
mfsentma/atacseq latest

  • version: 1.62.0
Latest release: almost 3 years ago - 36 downloads - 852 dependencies
andrewrrelmore/genepi_vscode test

  • version: 1.66.3
Latest release: over 2 years ago - 48 downloads - 1,188 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 1.66.3
Latest release: almost 3 years ago - 687 downloads - 1,367 dependencies
qdidiscoveryservices/vcfcompare 1.0

  • version: 1.68.0
Latest release: over 2 years ago - 1,044 downloads - 784 dependencies
alexthiery/archr 3.1

  • version: 1.62.0
Latest release: over 2 years ago - 238 downloads - 819 dependencies
smemane20/error_thres_amd_64 latest

  • version: 1.68.0
Latest release: almost 3 years ago - 21 downloads - 618 dependencies
fallingstar10/hbsigrocker latest

  • version: 1.68.0
Latest release: over 2 years ago - 256 downloads - 1,223 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.48.0
Latest release: about 7 years ago - 233 downloads - 1,191 dependencies
uvarc/rstudio tam5xe

  • version: 1.68.0
Latest release: over 2 years ago - 37 downloads - 1,062 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 1.58.0
Latest release: about 3 years ago - 77 downloads - 293 dependencies
almurphy/mungesumstats latest

  • version: 1.69.0
Latest release: almost 3 years ago - 109 downloads - 265 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 1.66.1
Latest release: about 3 years ago - 39 downloads - 598 dependencies
dhspence/docker-rstudio-python latest

  • version: 1.66.3
Latest release: almost 3 years ago - 111 downloads - 272 dependencies
gru4/scan2workinghg38 latest

  • version: 1.62.0
Latest release: over 2 years ago - 71 downloads - 776 dependencies
crpeters/r-methylkit 4.2.1

  • version: 1.66.2
Latest release: about 3 years ago - 80 downloads - 383 dependencies
indraniel/chip-pipeline-annotation v1

  • version: 1.66.3
Latest release: over 2 years ago - 291 downloads - 218 dependencies
khoulaha/shatterseek v1.0.0

  • version: 1.58.0
Latest release: about 3 years ago - 28 downloads - 664 dependencies
jpsmith5/rpipe 0.3.1

  • version: 1.66.1
Latest release: about 3 years ago - 69 downloads - 262 dependencies
gru4/scan2fixedhg38 latest

  • version: 1.62.0
Latest release: over 2 years ago - 88 downloads - 777 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 1.58.0
Latest release: almost 5 years ago - 13 downloads - 435 dependencies
alexsickler/open-pedcan latest

  • version: 1.54.0
Latest release: about 3 years ago - 219 downloads - 864 dependencies
sparktx/gviz 1.40.1

  • version: 1.64.0
Latest release: about 3 years ago - 34 downloads - 288 dependencies
mshriver01/share_task_archr latest

  • version: 1.62.0
Latest release: over 2 years ago - 91 downloads - 1,364 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 1.66.1
Latest release: about 3 years ago - 22 downloads - 598 dependencies
philipp02/pathway v1

  • version: 1.67.1
Latest release: about 3 years ago - 34 downloads - 345 dependencies
stormgod/deepmaps-cpu latest

  • version: 1.66.3
Latest release: almost 3 years ago - 114 downloads - 1,710 dependencies
apollodorus/polyglot v1

  • version: 1.66.1
Latest release: about 3 years ago - 77 downloads - 428 dependencies
omicschef/epigenomechef v1.1.5

  • version: 1.68.0
Latest release: almost 2 years ago - 414 downloads - 1,066 dependencies
hoonbiolab/hmftools_purple v3.7.2

  • version: 1.66.1
Latest release: about 3 years ago - 18 downloads - 270 dependencies
kdgosik/main-gitpod latest

  • version: 1.66.3
Latest release: almost 3 years ago - 238 downloads - 1,820 dependencies
hoonbiolab/hmftools_snv v3.2.2

  • version: 1.66.2
Latest release: about 3 years ago - 25 downloads - 271 dependencies
alexthiery/archr_seurat_signac_mega 3.2

  • version: 1.62.0
Latest release: over 2 years ago - 161 downloads - 441 dependencies
breezykermo/gvis latest

  • version: 1.54.0
Latest release: over 5 years ago - 23 downloads - 1,619 dependencies
scwatts/bolt_gpgr 0.1.0

  • version: 1.62.0
Latest release: over 2 years ago - 54 downloads - 337 dependencies
fgualdr/env_norm_gr_idr latest

  • version: 1.66.3
Latest release: over 2 years ago - 76 downloads - 506 dependencies
hoonbiolab/testbattenberg v1.0

  • version: 1.54.0
Latest release: about 3 years ago - 25 downloads - 325 dependencies
hoonbiolab/clustersv v1.1

  • version: 1.54.0
Latest release: almost 4 years ago - 24 downloads - 718 dependencies
andrewsg/archr dev

  • version: 1.68.0
Latest release: almost 2 years ago - 186 downloads - 1,356 dependencies
muhengliao/r_docker2 genome

  • version: 1.58.0
Latest release: almost 2 years ago - 348 downloads - 515 dependencies
sheddn/bioinformatics-tools latest

  • version: 1.62.0
Latest release: about 3 years ago - 60 downloads - 2,518 dependencies
dhspence/docker-hiccompare latest

  • version: 1.54.0
Latest release: over 4 years ago - 137 downloads - 1,271 dependencies
elynrfw/gerald-test latest

  • version: 1.66.1
Latest release: about 3 years ago - 38 downloads - 349 dependencies
kxk302/g4hunter 1.0.0

  • version: 1.66.3
Latest release: almost 3 years ago - 53 downloads - 505 dependencies
hoonbiolab/hmftools_linx v1.23.1

  • version: 1.66.2
Latest release: almost 3 years ago - 22 downloads - 988 dependencies
gesiscss/binder-kozo2-2dsakigakemtg2019-214397 c9d150b74c2eb09683e7fadd99703bda92c291cd

  • version: 1.54.0
Latest release: about 6 years ago - 16 downloads - 2,128 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 1.66.3
Latest release: over 2 years ago - 82 downloads - 1,562 dependencies
compbiocore/lee_isg_erv 20230306

  • version: 1.66.3
Latest release: almost 3 years ago - 15 downloads - 1,038 dependencies
repbioinfo/transformgampoi latest

  • version: 1.62.0
Latest release: over 2 years ago - 42 downloads - 1,664 dependencies
weishwu/nanomethphase 1.2.0

  • version: 1.56.0
Latest release: almost 3 years ago - 56 downloads - 1,274 dependencies
bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

  • version: 1.68.0, 1.66.2
Latest release: about 2 years ago - 110 downloads - 1,150 dependencies
skchronicles/genome-seek_trim_map v0.1.1

Official docker image for trimming and alignment with genome-seek

  • version: 1.66.3
Latest release: over 1 year ago - 510 downloads - 1,367 dependencies
qdidiscoveryservices/diffbind latest

  • version: 1.68.0
Latest release: over 2 years ago - 54 downloads - 526 dependencies
winuthayanon/rstudio 4.3.0

  • version: 1.68.0
Latest release: over 2 years ago - 166 downloads - 2,687 dependencies
hoonbiolab/titan v1.1

  • version: 1.54.0
Latest release: over 4 years ago - 48 downloads - 754 dependencies
mziemann/meth_analysis latest

Based on BioC release 3.14, this image is designed for analysis of infinium methylation array data

  • version: 1.62.0
Latest release: almost 3 years ago - 9 downloads - 1,347 dependencies
mbaardwijk/hmftools latest

  • version: 1.62.0
Latest release: almost 3 years ago - 52 downloads - 405 dependencies
hoonbiolab/hmftools_sv v.2.13.2

  • version: 1.66.2
Latest release: about 3 years ago - 39 downloads - 856 dependencies
jmonlong/terra-rstudio-custom 0.0.1

  • version: 1.66.2
Latest release: about 3 years ago - 17 downloads - 1,616 dependencies
mdivr/chicago v2

  • version: 1.66.3
Latest release: almost 3 years ago - 49 downloads - 645 dependencies
imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

  • version: 1.66.3
Latest release: over 2 years ago - 34 downloads - 1,568 dependencies
zjnolen/angsd-snakemake-pipeline 0.1

  • version: 1.62.0
Latest release: over 2 years ago - 142 downloads - 643 dependencies
ycli1995/bioinfo_dev 1.1.0

  • version: 1.68.0
Latest release: over 1 year ago - 188 downloads - 4,337 dependencies
arnstrm2/rstudio 4.3.1

R studio with Bioconductor and snRNAseq packages

  • version: 1.68.0
Latest release: over 2 years ago - 78 downloads - 1,444 dependencies
samplix/droplet-viewer-internal latest

  • version: 1.60.0
Latest release: almost 3 years ago - 57 downloads - 568 dependencies
wyangwu/r4.1.2 latest

  • version: 1.62.0
Latest release: over 2 years ago - 93 downloads - 827 dependencies
luisas/rfasta latest

  • version: 1.54.0
Latest release: over 5 years ago - 28 downloads - 501 dependencies
weishwu/diffbind 3.6.5

  • version: 1.64.0
Latest release: almost 3 years ago - 31 downloads - 1,507 dependencies
compbiocore/jupyterhub-docker-images-jh_image 20230524

  • version: 1.66.3
Latest release: over 2 years ago - 139 downloads - 3,115 dependencies
alexdhill/complete-seq time

  • version: 1.68.0
Latest release: over 1 year ago - 1,859 downloads - 584 dependencies
bioxfu/xseurat2 latest

  • version: 1.66.2
Latest release: almost 3 years ago - 79 downloads - 982 dependencies
haileyzhang/fragpipe-analyst v1.13

A Docker container of Fragpipe-Analyst

  • version: 1.66.3
Latest release: 8 months ago - 267 downloads - 1,511 dependencies
wlc27/dcanr v1

  • version: 1.66.2
Latest release: about 3 years ago - 94 downloads - 1,681 dependencies
preethiilumina/diffbind 1.5.1

fixed genome name

  • version: 1.66.3
Latest release: about 1 year ago - 332 downloads - 626 dependencies
yinxiu/variantalker v2.0

NextFlow pipeline to functionally annotate DNA variants in VCF files

  • version: 1.66.3
Latest release: over 2 years ago - 282 downloads - 1,068 dependencies
hoonbiolab/hmftools_cnv v3.8.4

  • version: 1.66.2
Latest release: over 2 years ago - 203 downloads - 985 dependencies
keithgraham5/cnvrobot_v4_2 latest

  • version: 1.54.0
Latest release: about 3 years ago - 49 downloads - 685 dependencies
fgualdr/envrperm latest

  • version: 1.66.1
Latest release: about 3 years ago - 34 downloads - 480 dependencies
gnwanne/decontx latest

  • version: 1.66.1
Latest release: about 3 years ago - 67 downloads - 938 dependencies
cgrlab/centos7_bfx 1.0.0

  • version: 1.66.3
Latest release: almost 3 years ago - 54 downloads - 1,457 dependencies
princessmaximacenter/gridss 2.13.2

  • version: 1.62.0
Latest release: over 2 years ago - 160 downloads - 801 dependencies
cbgr/cager261 1.4

Container for the CAGEr tool version 2.6.1.

  • version: 1.68.0
Latest release: almost 2 years ago - 77 downloads - 1,356 dependencies