Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
Package Usage : cran : XVector
Explore the latest package usage data for XVector in the cran ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 691
Total downloads: 2,705,549
More details on packages.ecosyste.ms - JSON
veupathdb/rserve 7
- version: 0.38.0
ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 0.18.0
broadinstitute/terra-jupyter-aou 8bf6b13
- version: 0.34.0, 0.38.0
ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30
- version: 0.18.0
nfcore/methylseq dev
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.
- version: 0.32.0
rocker/ropensci latest
- version: 0.20.0
ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30
- version: 0.18.0
nfcore/atacseq latest
A Docker container for the nf-core/atacseq pipeline.
- version: 0.26.0
biocontainers/control-freec v11.5_cv1
- version: 0.10.0
nfcore/chipseq dev
A docker image for nf-core/chipseq
- version: 0.28.0
dhspence/docker-basespace_chromoseq latest
- version: 0.24.0
nfcore/eager 2.5.0
A Docker image for the nf-core/eager pipeline.
- version: 0.30.0
mirekphd/ml-cpu-r40-rs-cust 20230912
- version: 0.40.0
dhspence/docker-genomic-analysis 122121
From Chris Miller's example
- version: 0.26.0
mirekphd/ml-cpu-r36-rs-cust latest
- version: 0.28.0
ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 0.18.0
nfcore/ampliseq dev
A Docker image for nf-core/ampliseq.
- version: 0.22.0
mirekphd/ml-cpu-r36-base latest
- version: 0.28.0
biocontainers/isee-galaxy v3.13_cv1.0.0
- version: 0.33.0
ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 0.18.0
ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 0.18.0
patroonorg/patroondeps latest
- version: 0.38.0
dhspence/docker-biscuit latest
- version: 0.20.0
ccdlstaging/dr_compendia 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 0.18.0
nfcore/airrflowreport dev
- version: 0.38.0
nfcore/circrna dev
Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.
- version: 0.26.0
nfcore/sarek 2.7.2
A Docker container for the nf-core/sarek pipeline
- version: 0.30.0
nfcore/slamseq dev
A docker image for nf-core/slamseq
- version: 0.22.0
nfcore/hic dev
A docker container for the nf-core/hic pipeline.
- version: 0.28.0
nfcore/nanoseq dev
Nanopore demultiplexing, QC and alignment pipeline
- version: 0.30.0
nfcore/scrnaseq dev
A Docker Container for the nf-core/scrnaseq pipeline.
- version: 0.26.0
hoonbiolab/cellranger v1.0
- version: 0.26.0
mirekphd/ml-cpu-r35-rs 20190201
- version: 0.22.0
dhspence/docker-homer latest
docker with chip-seq tool homer
- version: 0.20.0
nfcore/exoseq dev
A docker container for the ExoSeq pipeline
- version: 0.20.0
nfcore/lncpipe dev
A Docker image for nf-core/lncpipe
- version: 0.20.0
seglh/exomedepth f4716ad
- version: 0.36.0
gene110/nipt_report latest
- version: 0.18.0
veitveit/vsclust release-1.2.1
For more details, see https://bitbucket.org/veitveit/vsclust
- version: 0.38.0
dhspence/docker-sicer latest
- version: 0.20.0
qdidiscoveryservices/limma-voom 4.2.0
- version: 0.36.0
qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2
- version: 0.34.0
dhspence/docker-basestation latest
- version: 0.20.0
qdidiscoveryservices/py3_cellranger 6.1.2
- version: 0.28.0
veitveit/complexbrowser release-1.6
- version: 0.42.0, 0.38.0
austinhpatton123/r-4.2.2_uniprot.ws 2.38.0
- version: 0.38.0
mirekphd/ml-cpu-r35-jnb devel_2b2752c
- version: 0.20.0
dhspence/docker-dss latest
- version: 0.26.0
hoonbiolab/align_dna v1.3
- version: 0.26.0
biocontainers/bioconductor-rsamtools v1.26.1-2b1-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-cummerbund v2.16.0-2-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-bsgenome v1.42.0-2-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-variantannotation v1.20.2-1b1-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-ensembldb v1.6.2-1-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-genomicranges v1.26.2-1b1-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-shortread v1.32.0-1b1-deb_cv1
- version: 0.14.0
tercen/runtime-flowsuite 3.15-4
- version: 0.36.0
cimendes/splicing-pipelines-nf 3.1.ubuntu
- version: 0.32.0
biocontainers/bioconductor-genomicalignments v1.10.0-1b1-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-biovizbase v1.22.0-2-deb_cv1
- version: 0.14.0
koki/sctensor-experiments 20220208
- version: 0.34.0
evolbioinfo/deseq2 v1.28.1
- version: 0.28.0
qdidiscoveryservices/scrna_downstream 1.1
- version: 0.32.0
recetox/ramclustr 1.1.0-recetox0
- version: 0.28.0
koki/biocdev 20230818
- version: 0.41.1
anand7899/rmarkdown latest
- version: 0.38.0
prismcmap/sushi develop
- version: 0.30.0
hoonbiolab/hmftools v1.1
- version: 0.32.0
qdidiscoveryservices/bam_to_10x_counts latest
- version: 0.34.0
austinhpatton123/cogeqc-1.2.0_r-4.2.2 latest
- version: 0.38.0
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor
pcawg_broad_wgs_variant_callers
- version: 0.18.0
biocontainers/bioconductor-rtracklayer v1.34.1-1-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-gviz v1.18.1-1-deb_cv1
- version: 0.14.0
chgyi/bio 3.5.1
- version: 0.20.0
canaantt/notitia-ocpu latest
This is part of zager/notitia.
- version: 0.18.0
biocontainers/bioconductor-deseq2 v1.14.1-1-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-xvector v0.14.0-1b1-deb_cv1
- version: 0.14.0
broadinstitute/pcawg_full 7
- version: 0.16.0
biocontainers/bioconductor-summarizedexperiment v1.4.0-2-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-phyloseq v1.19.1-2-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-genomicfeatures v1.26.2-1-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-biostrings v2.42.1-1-deb_cv1
- version: 0.14.0
biocontainers/bioconductor-altcdfenvs v1-2.36.0-1-deb_cv1
- version: 0.14.0
hoonbiolab/hl_base v1.2
- version: 0.26.0
chgyi/metaware_rna_denovo latest
- version: 0.22.0