Ecosyste.ms: Docker
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testalabgh/downstream : signac-1.4.0
Latest release: almost 2 years ago - 485 downloads - 3,517 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.56.2
- AnnotationFilter 1.18.0
- ArchR 1.0.2
- BH 1.78.0-0
- BSgenome.Hsapiens.UCSC.hg38 1.4.4
- BSgenome 1.62.0
- Biobase 2.54.0
- BiocFileCache 2.2.1
- BiocGenerics 0.40.0
- BiocIO 1.4.0
- BiocManager 1.30.18
- BiocNeighbors 1.12.0
- BiocParallel 1.28.3
- BiocSingular 1.10.0
- BiocVersion 3.14.0
- Biostrings 2.62.0
- CNEr 1.30.0
- Cairo 1.6-0
- ComplexHeatmap 2.10.0
- ComplexUpset 1.3.3
- DBI 1.1.3
- DEoptimR 1.0-11
- DO.db 2.9
- DOSE 3.20.1
- DT 0.25
- DelayedArray 0.20.0
- DelayedMatrixStats 1.16.0
- DirichletMultinomial 1.36.0
- EnsDb.Hsapiens.v86 2.99.0
- FNN 1.1.3.1
- Formula 1.2-4
- GO.db 3.14.0
- GOSemSim 2.20.0
- GenomeInfoDb 1.30.1
- GenomeInfoDbData 1.2.7
- GenomicAlignments 1.30.0
- GenomicFeatures 1.46.5
- GenomicRanges 1.46.1
- GetoptLong 1.0.5
- GlobalOptions 0.1.2
- Gviz 1.38.4
- HDF5Array 1.22.1
- Hmisc 4.7-1
- IRanges 2.28.0
- IRdisplay 1.1
- IRkernel 1.3
- JASPAR2020 0.99.10
- KEGGREST 1.34.0
- KEGGgraph 1.54.0
- KernSmooth 2.23-20
- MASS 7.3-55
- MOFA2 1.4.0
- Matrix.utils 0.9.8
- Matrix 1.5-1
- MatrixGenerics 1.6.0
- MatrixModels 0.5-1
- Nebulosa 1.4.0
- ProtGenerics 1.26.0
- R.cache 0.16.0
- R.methodsS3 1.8.2
- R.oo 1.25.0
- R.utils 2.12.0
- R6 2.5.1
- RANN 2.6.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.9
- ROCR 1.0-11
- RSQLite 2.2.18
- RSpectra 0.16-1
- Rcpp 1.0.9
- RcppAnnoy 0.0.19
- RcppArmadillo 0.11.4.0.1
- RcppEigen 0.3.3.9.2
- RcppHNSW 0.4.1
- RcppProgress 0.4.2
- RcppProgressArmadillo 0.2
- RcppProgressETA 0.1
- RcppProgressExample 0.2
- RcppRoll 0.3.0
- RcppTOML 0.1.7
- ResidualMatrix 1.4.0
- Rgraphviz 2.38.0
- Rhdf5lib 1.16.0
- RhpcBLASctl 0.21-247.1
- Rhtslib 1.26.0
- Rmagic 2.0.3
- Rsamtools 2.10.0
- Rtsne 0.16
- S4Vectors 0.32.4
- ScaledMatrix 1.2.0
- Seurat 4.2.0
- SeuratData 0.2.2
- SeuratDisk 0.0.0.9020
- SeuratObject 4.1.2
- SeuratWrappers 0.3.0
- Signac 1.8.0
- SingleCellExperiment 1.16.0
- SparseM 1.81
- SummarizedExperiment 1.24.0
- TFBSTools 1.32.0
- TFMPvalue 0.0.8
- TxDb.Hsapiens.UCSC.hg38.knownGene 3.14.0
- UpSetR 1.4.0
- VGAM 1.1-7
- VariantAnnotation 1.40.0
- VennDiagram 1.7.3
- WGCNA 1.71
- XML 3.99-0.11
- XVector 0.34.0
- abind 1.4-5
- annotate 1.72.0
- ape 5.6-2
- aplot 0.1.7
- arrow 9.0.0.2
- askpass 1.1
- assertthat 0.2.1
- babelgene 22.9
- backports 1.4.1
- base64enc 0.1-3
- base 3.6.3
- base 4.1.3
- basilisk.utils 1.6.0
- basilisk 1.6.0
- batchelor 1.10.0
- beachmat 2.10.0
- beachtest 1.0.0
- bedr 1.0.7
- bedtoolsr 2.30.0-4
- beeswarm 0.4.0
- biomaRt 2.50.3
- biovizBase 1.42.0
- bit64 4.0.5
- bit 4.0.4
- bitops 1.0-7
- blob 1.2.3
- boot 1.3-28
- brew 1.0-8
- brio 1.1.3
- broom 1.0.1
- bslib 0.4.0
- caTools 1.18.2
- cachem 1.0.6
- callr 3.7.2
- car 3.1-0
- carData 3.0-5
- checkmate 2.1.0
- chromVAR 1.16.0
- cicero 1.3.7
- circlize 0.4.15
- class 7.3-20
- classInt 0.4-8
- cli 3.4.1
- clipr 0.8.0
- clue 0.3-61
- cluster 2.1.2
- clusterProfiler 4.2.2
- clustree 0.5.0
- codetools 0.2-18
- collections 0.3.5
- colorspace 2.0-3
- commonmark 1.8.0
- compiler 3.6.3
- compiler 4.1.3
- corrplot 0.92
- cowplot 1.1.1
- cpp11 0.4.2
- crayon 1.5.1
- credentials 1.3.2
- crosstalk 1.2.0
- curl 4.3.2
- cyclocomp 1.1.0
- data.table 1.14.2
- datasets 3.6.3
- datasets 4.1.3
- dbplyr 2.2.1
- deldir 1.0-6
- desc 1.4.2
- devtools 2.4.4
- dichromat 2.0-0.1
- diffobj 0.3.5
- digest 0.6.29
- diptest 0.76-0
- dir.expiry 1.2.0
- doParallel 1.0.17
- downlit 0.4.2
- downloader 0.4
- dplyr 1.0.10
- dqrng 0.3.0
- dynamicTreeCut 1.63-1
- e1071 1.7-11
- edgeR 3.36.0
- ellipsis 0.3.2
- enrichplot 1.14.2
- ensembldb 2.18.4
- evaluate 0.15
- fansi 1.0.3
- farver 2.1.1
- fastcluster 1.2.3
- fastmap 1.1.0
- fastmatch 1.1-3
- feather 0.3.5
- fgsea 1.20.0
- filelock 1.0.2
- fitdistrplus 1.1-8
- flexmix 2.3-18
- fontawesome 0.3.0
- forcats 0.5.2
- foreach 1.5.2
- foreign 0.8-82
- formatR 1.12
- fpc 2.2-9
- fs 1.5.2
- furrr 0.3.1
- futile.logger 1.4.3
- futile.options 1.0.1
- future.apply 1.9.1
- future 1.28.0
- generics 0.1.3
- gert 1.9.0
- ggalluvial 0.12.3
- ggbeeswarm 0.6.0
- ggforce 0.4.1
- ggfun 0.0.7
- ggplot2 3.3.6
- ggplotify 0.1.0
- ggpubr 0.4.0
- ggraph 2.0.6
- ggrastr 1.0.1
- ggrepel 0.9.1
- ggridges 0.5.4
- ggsci 2.9
- ggsignif 0.6.3
- ggtree 3.2.1
- ggupset 0.3.0
- gh 1.3.1
- gitcreds 0.1.2
- glasso 1.11
- glmGamPoi 1.6.0
- globals 0.16.1
- glue 1.6.2
- goftest 1.2-3
- gplots 3.1.3
- grDevices 3.6.3
- grDevices 4.1.3
- graph 1.72.0
- graphics 3.6.3
- graphics 4.1.3
- graphlayouts 0.8.2
- grid 3.6.3
- grid 4.1.3
- gridExtra 2.3
- gridGraphics 0.5-1
- grr 0.9.5
- gtable 0.3.1
- gtools 3.9.3
- harmony 0.1.0
- haven 2.5.1
- hdWGCNA 0.2.00
- hdf5r 1.3.7
- here 1.0.1
- highr 0.9
- hms 1.1.2
- htmlTable 2.4.1
- htmltools 0.5.3
- htmlwidgets 1.5.4
- httpuv 1.6.6
- httr 1.4.4
- ica 1.0-3
- igraph 1.2.11
- impute 1.68.0
- ini 0.3.1
- interp 1.1-3
- irlba 2.3.5.1
- isoband 0.2.5
- iterators 1.0.14
- jpeg 0.1-9
- jquerylib 0.1.4
- jsonlite 1.8.0
- kernlab 0.9-31
- knitr 1.40
- ks 1.13.5
- labeling 0.4.2
- lambda.r 1.2.4
- languageserver 0.0.0.9000
- languageserver 0.3.13
- later 1.3.0
- lattice 0.20-45
- latticeExtra 0.6-30
- lazyeval 0.2.2
- leiden 0.4.3
- leidenbase 0.1.9
- lifecycle 1.0.1
- limma 3.50.3
- lintr 3.0.1
- listenv 0.8.0
- lme4 1.1-30
- lmtest 0.9-40
- locfit 1.5-9.6
- magick 2.7.3
- magrittr 2.0.3
- maptools 1.1-4
- markdown 1.1
- matrixStats 0.62.0
- mclust 5.4.10
- memoise 2.0.1
- methods 3.6.3
- methods 4.1.3
- mgcv 1.8-39
- mime 0.12
- miniUI 0.1.1.1
- minqa 1.2.4
- misc3d 0.9-1
- mnormt 2.1.1
- modeltools 0.2-23
- monocle3 1.2.9
- morebeach 1.0.0
- morebeachtests 1.0.0
- motifmatchr 1.16.0
- msigdbr 7.5.1
- multicool 0.1-12
- munsell 0.5.0
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- mvtnormAPI 1.0-0
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- nloptr 2.0.3
- nnet 7.3-17
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- openssl 2.0.3
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- org.testing.db 0.1
- parallel 3.6.3
- parallel 4.1.3
- parallelly 1.32.1
- patchwork 1.1.2
- pathfindR.data 1.1.2
- pathfindR 1.6.4
- pbapply 1.5-0
- pbdZMQ 0.3-7
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- pbmcapply 1.5.1
- pcaMethods 1.86.0
- pheatmap 1.0.12
- pillar 1.8.1
- pkgbuild 1.3.1
- pkgconfig 2.0.3
- pkgdown 2.0.6
- pkgload 1.3.0
- plogr 0.2.0
- plot3D 1.4
- plotly 4.10.0
- plyr 1.8.7
- png 0.1-7
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- polynom 1.4-1
- poweRlaw 0.70.6
- prabclus 2.3-2
- pracma 2.4.2
- praise 1.0.0
- preprocessCore 1.56.0
- prettyunits 1.1.1
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- profvis 0.3.7
- progress 1.2.2
- progressr 0.11.0
- promises 1.2.0.1
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- ps 1.7.1
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- psych 2.2.9
- purrr 0.3.4
- quantreg 5.94
- qvalue 2.26.0
- rJava 1.0-6
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- rappdirs 0.3.3
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- readr 2.1.3
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- repr 1.1.4
- reshape2 1.4.4
- restfulr 0.0.15
- reticulate 1.26
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- rgeos 0.5-9
- rhdf5 2.38.1
- rhdf5filters 1.6.0
- riverplot 0.10
- rjson 0.2.21
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- rliger 1.0.0
- rmarkdown 2.16
- robustbase 0.95-0
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- rpart 4.1.16
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- rsample 1.1.0
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- rstudioapi 0.14
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- rversions 2.1.2
- s2 1.1.0
- sass 0.4.2
- scTenifoldKnk 1.0.2
- scTenifoldNet 1.3
- scales 1.2.1
- scattermore 0.8
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- sctransform 0.3.5
- scuttle 1.4.0
- seqLogo 1.60.0
- sessioninfo 1.2.2
- sf 1.0-8
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- shape 1.4.6
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