bicore/cellexport_on_hpc t10

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

ocdr/ds-apps 1.0.43

jmlehrer/scanvi-benchmark intersection

estorrs/multiplex-imaging-pipeline 0.2.0

jmlehrer/sims-benchmark aparnafetalintersection

maayanlab/d2h2 1.3.0

yiruis/singlecellfusion v2

paularstrpo/cnmf v01.27.2023

fgeraci18/rapids_tensorflow v0.2

ghhenry/curio-seeker-pipeline latest

kevinmeli/scte_kmeli_dockerimg 2.1

atex91/scanpy-project latest

jafoltz/sc_python 8

lishuangshuang3/dnbc4dev 2.0.3

chriswyatt/bioseqio_gffread latest

gcfntnu/cellbender 0.3.0

biohpc/scrna2023 2.0.2

gesiscss/binder-r2d-g5b5b759-jaspreetishar-2dboremi-6968a5 ec221e55a5acd7d59444dd597c68b1fe1dff936d

etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

mmingay2/scanpy 0.2

nikhil166/cellxgene_vip_docker v2.4

koki/velocyto 20221005

kaizhang/scatac-bench 0.2.1

haniffalab/webatlas-pipeline 0.5.3

cavenel/spatialtranscriptomics latest

mhooper718/snap2scvi v1

etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

depot001/scipy-notebook-cellrank 26062023

evafastpf/commot 0.1

berombau/combio-project-2022-2023 latest

mknudson/share_task_cell_annotation mei-cell-annotation

bioinfotongli/spatial_annot latest

kboltonlab/scbert 0.2

goushixue/stereopy latest

stormgod/deepmaps-cpu latest

alexthiery/scenicplus 0.1

johnyaku/souporcell test

Extension to the original souporcell pipeline:

kdgosik/main-gitpod latest

fluentin55/singlecell_docker 1.2

viascientific/cellxgene_vip_app 1.1.1

agobbini/immcantation_ingm 4.3.1

curiobioinformatics/curio-seeker-pipeline 2023.12.29

sheddn/bioinformatics-tools latest

privacyiskey/11.3lts-scanpy latest

jonasmrr/scrnaseq-pipeline latest

dockeryjx199908/test_auth_code v1

brianyee/celligrate 55ba642

bioxfu/xseurat2 latest

robertplayer/scidap-genelists v5.0.0

bicore/scrattch_mapping 0.51

pvstodghill/pipeline-genomes 2023-11-21

kingstonduo/cellxgene v1.0.0

singlecellopenproblems/openproblems-python-pytorch latest

singlecellopenproblems/openproblems-python-bedtools latest

depot001/scipy-notebook-scanpy latest

This is scipy-notebook with scanpy installed on top of it.

alexanrna/souporcell v2.4.0.final_v2

zhangchao162/cuda-pytorch 11.3

cuda11.3 + torch1.10.0 + torch_geometric

mhooper718/multivi v1

mvillanu/cnmf latest

erikfas/spatialtranscriptomics latest

Temporary Dockerfile for nf-core/spatialtranscriptomics

testalabgh/downstream signac-1.4.0

gesiscss/binder-yoseflab-2dscvi-03fa30 b20e34f02a87d16790dbacc95b2ae1714c08615c

johnjun094/scgsea 0.3.11

DockerFile for benchmarking ssGSEA for single-cell RNA-seq

gesiscss/binder-imperial-2dgenomics-2dfacility-2dscanpy-2dnotebook-2dimage-6f44d6 e9423c0c1f8a91c5a06d2023b6abfeee4fbe4c0b

dyeramosu/scenic_plus_terra 1.0.2

ocdr/dcv 1.0.10

leepc12/test-jupyterhub v0.2.0

test-jupyterhub

shl198/sc_ppl 202306

seamustard52/introbioinfo-exercise06 0.0.1

jmlehrer/scnym-benchmark timetest2

btrspg/tape 1.1.2

koki/kb_python 0.24.4

jmlehrer/all-benchmarks latest

mparikhbroad/soupx 1.0.0

njjai/scrattch_mapping 1.1.0

aleksa1902/spagcn latest

crukmi/liana_tensor 0.1.9

ireceptor/gateway-utilities tapis3

takh/melanoma_visium_jax latest

njjai/scbasset_ai 0.1

cerebrassu/downstream cerebra-24.06.1