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Package Usage : pypi : pybedtools

Explore the latest package usage data for pybedtools in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 54
Total downloads: 166,588
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

vanallenlab/sv-pipeline rlc_aou_evidencetable_fix

  • version: 0.9.0
Latest release: over 1 year ago - 26,506 downloads - 1,231 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 0.9.0
Latest release: almost 3 years ago - 90 downloads - 494 dependencies
unlhcc/cellranger-arc 2.0.2

  • version: 0.8.2
Latest release: over 2 years ago - 816 downloads - 235 dependencies
njaved/tf_peaks_processing latest

tf_peaks_processing

  • version: 0.9.0
Latest release: almost 3 years ago - 4,370 downloads - 97 dependencies
anastacia9/earth latest

  • version: 0.9.0
Latest release: over 3 years ago - 106 downloads - 31 dependencies
geedrn/dajin tensorflow

  • version: 0.8.1
Latest release: almost 3 years ago - 101 downloads - 539 dependencies
dhspence/docker-smallrnaseq latest

  • version: 0.7.10
Latest release: over 7 years ago - 862 downloads - 911 dependencies
dhspence/docker-fluff latest

  • version: 0.7.10
Latest release: almost 7 years ago - 59 downloads - 493 dependencies
ctomlins/bcl2fastq latest

  • version: 0.7.10
Latest release: over 4 years ago - 58 downloads - 474 dependencies
mdivr/quarto v17.2

  • version: 0.9.0
Latest release: 8 months ago - 1,434 downloads - 2,693 dependencies
skoyamamd/ldsc latest

  • version: 0.8.2
Latest release: over 3 years ago - 63 downloads - 325 dependencies
chgyi/bio 3.5.1

  • version: 0.7.10
Latest release: about 7 years ago - 661 downloads - 1,077 dependencies
shukwong/rstudio_with_gwas_tools fd324eb9d3d2117fc37a157b66fa371a53693442

rstudio with several gwas tools installed

  • version: 0.7.10
Latest release: almost 3 years ago - 480 downloads - 1,361 dependencies
ctomlins/rna-seq-pipeline latest

  • version: 0.8.2
Latest release: about 4 years ago - 61 downloads - 498 dependencies
dhspence/docker-manta 1.5.0

  • version: 0.7.10
Latest release: almost 7 years ago - 233 downloads - 1,191 dependencies
ctomlins/supernova v2.1.1

  • version: 0.7.10
Latest release: about 7 years ago - 129 downloads - 297 dependencies
steepale/python_base 3.8.16

  • version: 0.9.0
Latest release: almost 3 years ago - 49 downloads - 81 dependencies
dhspence/docker-rstudio-python latest

  • version: 0.9.0
Latest release: over 2 years ago - 108 downloads - 272 dependencies
maulik23/scalepopgen 0.1.2

  • version: 0.9.0
Latest release: over 2 years ago - 68 downloads - 156 dependencies
alexsickler/open-pedcan latest

  • version: 0.8.1
Latest release: almost 3 years ago - 219 downloads - 864 dependencies
hugtools/hugtools_primer4hugbuild 0.3.0-beta-4

  • version: 0.7.10, 0.9.0
Latest release: almost 3 years ago - 76 downloads - 218 dependencies
dhspence/docker-baseimagewithconda latest

  • version: 0.8.2
Latest release: over 4 years ago - 35 downloads - 67 dependencies
prosyslab/bug-bench-python3-gffutils 20210805

  • version: 0.8.0
Latest release: over 4 years ago - 22 downloads - 18 dependencies
alexthiery/scenicplus 0.1

  • version: 0.9.0
Latest release: over 2 years ago - 162 downloads - 1,301 dependencies
dhspence/docker-genomic-analysis-lite 102321

  • version: 0.8.2
Latest release: about 4 years ago - 45 downloads - 397 dependencies
andrewsg/dictys latest

  • version: 0.9.0
Latest release: over 2 years ago - 72 downloads - 1,481 dependencies
scwatts/bolt_gpgr 0.1.0

  • version: 0.9.1
Latest release: about 2 years ago - 54 downloads - 337 dependencies
aminhaghparast/genomics21 2.12

  • version: 0.6.4, 0.7.10, 0.8.2
Latest release: almost 3 years ago - 12 downloads - 522 dependencies
dhspence/docker-hiccompare latest

  • version: 0.8.1
Latest release: over 4 years ago - 130 downloads - 1,271 dependencies
soymintc/savana 0.0.2

Dockerized SAVANA (an SV caller) from https://github.com/cortes-ciriano-lab/savana

  • version: 0.9.0
Latest release: over 2 years ago - 58 downloads - 154 dependencies
sgiorgetti/api-build release-109-56

  • version: 0.8.2
Latest release: almost 3 years ago - 33 downloads - 399 dependencies
glenn032787/nanosim 1.5

  • version: 0.9.0, 0.8.1
Latest release: over 2 years ago - 69 downloads - 32 dependencies
dhspence/docker-longread latest

  • version: 0.9.0
Latest release: about 3 years ago - 45 downloads - 155 dependencies
aokad/savana 1.0.3

  • version: 0.9.0
Latest release: over 2 years ago - 33 downloads - 250 dependencies
hoonbiolab/telomeasure v1.1

  • version: 0.7.10
Latest release: almost 4 years ago - 35 downloads - 814 dependencies
dmiller15/delly 0.7.6

  • version: 0.9.0
Latest release: almost 3 years ago - 18 downloads - 234 dependencies
broadinstitute/viral-ngs 1.25.0

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 0.7.10
Latest release: about 6 years ago - 26,176 downloads - 417 dependencies
sridnona/isoquant 3.1.1

  • version: 0.8.1
Latest release: almost 3 years ago - 98 downloads - 90 dependencies
testalabgh/downstream signac-1.4.0

  • version: 0.9.0
Latest release: over 2 years ago - 485 downloads - 3,517 dependencies
dhspence/docker-vep 93

  • version: 0.7.10
Latest release: over 6 years ago - 77 downloads - 1,191 dependencies
intelliseqngs/mkfastq 0.0.2

  • version: 0.6.4
Latest release: over 5 years ago - 91 downloads - 505 dependencies
dhspence/encode-atac 1

encode atac pipeline docker image

  • version: 0.6.9
Latest release: almost 7 years ago - 152 downloads - 705 dependencies
ctomlins/supertellnova latest

  • version: 0.7.10
Latest release: almost 5 years ago - 66 downloads - 309 dependencies
vanallenlab/g2c_pipeline 05aa88e

  • version: 0.9.0
Latest release: 3 months ago - 268,936 downloads - 1,237 dependencies
chriswyatt/jcvi version2.0

  • version: 0.9.0
Latest release: about 3 years ago - 241 downloads - 798 dependencies
intelliseqngs/resources longranger_v0.1

  • version: 0.6.4
Latest release: over 5 years ago - 381 downloads - 1,305 dependencies
hoonbiolab/pepatac v1.1

  • version: 0.8.2
Latest release: about 4 years ago - 70 downloads - 1,213 dependencies
dyeramosu/scenic_plus_terra 1.0.2

  • version: 0.9.0
Latest release: about 2 years ago - 347 downloads - 579 dependencies
lokeshbio/support_6042 latest

  • version: 0.9.0
Latest release: almost 3 years ago - 44 downloads - 182 dependencies
dmiller15/vcfmerger2 0.9.3

  • version: 0.9.0
Latest release: about 3 years ago - 183 downloads - 865 dependencies
sridnona/r4.2.0 v1

  • version: 0.9.0
Latest release: over 2 years ago - 98 downloads - 832 dependencies
aminhaghparast/ieo V.18

  • version: 0.8.2
Latest release: over 2 years ago - 28 downloads - 181 dependencies
scwatts/bolt_circos 0.1.0

  • version: 0.9.1
Latest release: about 2 years ago - 48 downloads - 66 dependencies
hugtools/primer4hugbuild 0.4.2

  • version: 0.7.10
Latest release: over 2 years ago - 98 downloads - 470 dependencies