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Package Usage : pypi : scanpy

Explore the latest package usage data for scanpy in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 66
Total downloads: 20,246
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

qdidiscoveryservices/cellranger7.0.1_py3_r4 v1.2.2

  • version: 1.9.3
Latest release: about 2 years ago - 4,404 downloads - 1,464 dependencies
jmlehrer/scanvi-benchmark intersection

  • version: 1.9.3
Latest release: about 2 years ago - 324 downloads - 508 dependencies
estorrs/multiplex-imaging-pipeline 0.2.0

  • version: 1.9.3
Latest release: about 2 years ago - 1,834 downloads - 1,208 dependencies
jmlehrer/sims-benchmark aparnafetalintersection

  • version: 1.9.3
Latest release: about 2 years ago - 1,904 downloads - 565 dependencies
maayanlab/d2h2 1.3.0

  • version: 1.9.1
Latest release: about 2 years ago - 605 downloads - 251 dependencies
yiruis/singlecellfusion v2

  • version: 1.4.4.post1
Latest release: over 2 years ago - 92 downloads - 959 dependencies
paularstrpo/cnmf v01.27.2023

  • version: 1.9.1
Latest release: almost 3 years ago - 121 downloads - 62 dependencies
fgeraci18/rapids_tensorflow v0.2

  • version: 1.9.1
Latest release: about 3 years ago - 92 downloads - 2,343 dependencies
ghhenry/curio-seeker-pipeline latest

  • version: 1.9.1
Latest release: about 3 years ago - 40 downloads - 926 dependencies
yacine902/genevector 0.0.1

  • version: 1.9.1
Latest release: over 2 years ago - 62 downloads - 272 dependencies
atex91/scanpy-project latest

  • version: 1.9.1
Latest release: almost 3 years ago - 77 downloads - 42 dependencies
jafoltz/sc_python 8

  • version: 1.9.2
Latest release: almost 3 years ago - 122 downloads - 438 dependencies
lishuangshuang3/dnbc4dev 2.0.3

  • version: 1.9.3
Latest release: over 2 years ago - 124 downloads - 1,043 dependencies
chriswyatt/bioseqio_gffread latest

  • version: 1.7.2
Latest release: over 2 years ago - 61 downloads - 240 dependencies
biohpc/scrna2023 2.0.2

  • version: 1.9.3
Latest release: almost 2 years ago - 216 downloads - 1,233 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 1.9.3
Latest release: 9 months ago - 2,648 downloads - 757 dependencies
mmingay2/scanpy 0.2

  • version: 1.9.2
Latest release: almost 3 years ago - 116 downloads - 55 dependencies
nikhil166/cellxgene_vip_docker v2.4

  • version: 1.6.1
Latest release: over 2 years ago - 392 downloads - 2,101 dependencies
koki/velocyto 20221005

  • version: 1.9.1
Latest release: over 3 years ago - 35 downloads - 73 dependencies
kaizhang/scatac-bench 0.2.1

  • version: 1.9.3
Latest release: over 2 years ago - 440 downloads - 588 dependencies
haniffalab/webatlas-pipeline 0.5.3

  • version: 1.9.1
Latest release: about 1 year ago - 462 downloads - 224 dependencies
cavenel/spatialtranscriptomics latest

  • version: 1.9.3
Latest release: almost 3 years ago - 168 downloads - 193 dependencies
mhooper718/snap2scvi v1

  • version: 1.9.1
Latest release: over 2 years ago - 77 downloads - 1,164 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 1.6.1, 1.9.1
Latest release: over 1 year ago - 1,193 downloads - 6,961 dependencies
depot001/scipy-notebook-cellrank 26062023

  • version: 1.9.2
Latest release: over 2 years ago - 88 downloads - 1,320 dependencies
evafastpf/commot 0.1

  • version: 1.9.3
Latest release: over 2 years ago - 62 downloads - 1,877 dependencies
mknudson/share_task_cell_annotation mei-cell-annotation

  • version: 1.9.3
Latest release: over 2 years ago - 158 downloads - 316 dependencies
bioinfotongli/spatial_annot latest

  • version: 1.9.3
Latest release: over 2 years ago - 65 downloads - 124 dependencies
kboltonlab/scbert 0.2

  • version: 1.9.1
Latest release: about 3 years ago - 351 downloads - 301 dependencies
goushixue/stereopy latest

  • version: 1.9.1
Latest release: about 3 years ago - 25 downloads - 319 dependencies
stormgod/deepmaps-cpu latest

  • version: 1.7.2
Latest release: almost 3 years ago - 114 downloads - 1,710 dependencies
alexthiery/scenicplus 0.1

  • version: 1.9.3
Latest release: over 2 years ago - 162 downloads - 1,301 dependencies
kdgosik/main-gitpod latest

  • version: 1.9.3
Latest release: almost 3 years ago - 232 downloads - 1,820 dependencies
fluentin55/singlecell_docker 1.2

  • version: 1.9.3
Latest release: almost 3 years ago - 109 downloads - 452 dependencies
viascientific/cellxgene_vip_app 1.1.1

  • version: 1.6.1
Latest release: over 2 years ago - 143 downloads - 2,287 dependencies
agobbini/immcantation_ingm 4.3.1

  • version: 1.9.1
Latest release: about 3 years ago - 44 downloads - 84 dependencies
curiobioinformatics/curio-seeker-pipeline 2023.12.29

  • version: 1.9.1, 1.9.2
Latest release: about 2 years ago - 22,278 downloads - 1,523 dependencies
sheddn/bioinformatics-tools latest

  • version: 1.9.3
Latest release: about 3 years ago - 60 downloads - 2,518 dependencies
privacyiskey/11.3lts-scanpy latest

  • version: 1.8.2
Latest release: almost 3 years ago - 69 downloads - 170 dependencies
mhooper718/snapatac2 v2

  • version: 1.9.4
Latest release: over 1 year ago - 135 downloads - 1,485 dependencies
jonasmrr/scrnaseq-pipeline latest

  • version: 1.9.3
Latest release: over 2 years ago - 55 downloads - 356 dependencies
brianyee/celligrate 55ba642

  • version: 1.7.2
Latest release: about 3 years ago - 20 downloads - 2,522 dependencies
robertplayer/scidap-genelists v5.0.0

  • version: 1.9.3
Latest release: over 1 year ago - 444 downloads - 609 dependencies
pvstodghill/pipeline-genomes 2023-11-21

  • version: 1.9.3
Latest release: about 2 years ago - 50 downloads - 312 dependencies
depot001/scipy-notebook-scanpy latest

This is scipy-notebook with scanpy installed on top of it.

  • version: 1.9.1
Latest release: almost 3 years ago - 51 downloads - 1,335 dependencies
zhangchao162/cuda-pytorch 11.3

cuda11.3 + torch1.10.0 + torch_geometric

  • version: 1.9.1
Latest release: about 3 years ago - 41 downloads - 294 dependencies
mhooper718/multivi v1

  • version: 1.9.1
Latest release: almost 3 years ago - 17 downloads - 1,220 dependencies
mvillanu/cnmf latest

  • version: 1.6.0
Latest release: over 2 years ago - 120 downloads - 602 dependencies
erikfas/spatialtranscriptomics latest

Temporary Dockerfile for nf-core/spatialtranscriptomics

  • version: 1.9.3
Latest release: about 3 years ago - 1,446 downloads - 310 dependencies
testalabgh/downstream signac-1.4.0

  • version: 1.9.1
Latest release: almost 3 years ago - 485 downloads - 3,517 dependencies
gesiscss/binder-yoseflab-2dscvi-03fa30 b20e34f02a87d16790dbacc95b2ae1714c08615c

  • version: 1.4.6
Latest release: over 5 years ago - 82 downloads - 1,635 dependencies
johnjun094/scgsea 0.3.11

DockerFile for benchmarking ssGSEA for single-cell RNA-seq

  • version: 1.9.1
Latest release: over 2 years ago - 547 downloads - 924 dependencies
gesiscss/binder-imperial-2dgenomics-2dfacility-2dscanpy-2dnotebook-2dimage-6f44d6 e9423c0c1f8a91c5a06d2023b6abfeee4fbe4c0b

  • version: 1.7.2
Latest release: over 4 years ago - 484 downloads - 2,676 dependencies
dyeramosu/scenic_plus_terra 1.0.2

  • version: 1.9.3
Latest release: about 2 years ago - 347 downloads - 579 dependencies
leepc12/test-jupyterhub v0.2.0

test-jupyterhub

  • version: 1.9.3
Latest release: almost 3 years ago - 132 downloads - 1,857 dependencies
shl198/sc_ppl 202306

  • version: 1.9.3
Latest release: over 2 years ago - 65 downloads - 2,005 dependencies
jmlehrer/scnym-benchmark timetest2

  • version: 1.9.3
Latest release: over 2 years ago - 184 downloads - 376 dependencies
jmlehrer/all-benchmarks latest

  • version: 1.9.3
Latest release: over 2 years ago - 110 downloads - 568 dependencies
mparikhbroad/soupx 1.0.0

  • version: 1.9.3
Latest release: over 2 years ago - 133 downloads - 1,154 dependencies
crukmi/liana_tensor 0.1.9

  • version: 1.9.1
Latest release: about 3 years ago - 27 downloads - 467 dependencies
aleksa1902/spagcn latest

  • version: 1.9.3
Latest release: over 2 years ago - 40 downloads - 65 dependencies
ireceptor/gateway-utilities tapis3

  • version: 1.9.1
Latest release: almost 3 years ago - 15 downloads - 44 dependencies
takh/melanoma_visium_jax latest

  • version: 1.9.1
Latest release: about 3 years ago - 41 downloads - 83 dependencies
etretiakov/rocker-session latest

  • version: 1.4.6
Latest release: over 2 years ago - 78 downloads - 2,565 dependencies
njjai/scbasset_ai 0.1

  • version: 1.9.3
Latest release: over 2 years ago - 22 downloads - 1,258 dependencies
cerebrassu/downstream cerebra-24.06.1

  • version: 1.9.3
Latest release: over 1 year ago - 2,997 downloads - 2,727 dependencies