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Package Usage : deb : ubuntu/tabix

Explore the latest package usage data for ubuntu/tabix in the deb ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 350
Total downloads: 34,323,724
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

  • version: 1.7-2, 1.13+ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: 9 months ago - 40,521,415 downloads - 513 dependencies
intelliseqngs/hisat-genotype test

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 106 downloads - 363 dependencies
wilfriedguiblet/isomir v0.3

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 285 downloads - 1,657 dependencies
bioconductor/bioconductor_docker RELEASE_3_20

Bioconductor Docker Images

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 1,450,871 downloads - 1,397 dependencies
koki/urchin_workflow_seurat 20250213

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: 11 months ago - 183 downloads - 1,471 dependencies
dmiller15/gatk 4.1.7.0R0.1

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 5 years ago - 95 downloads - 866 dependencies
elle72/basic pygenometrack

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: 6 months ago - 55,692 downloads - 397 dependencies
koki/tensor-projects-parasite 20220819

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 91 downloads - 1,281 dependencies
intelliseqngs/task_gtc-to-vcf 1.1.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 47 downloads - 635 dependencies
intelliseqngs/ibd v0.1

  • version: 1.9-10
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-19.10
Latest release: almost 6 years ago - 136 downloads - 347 dependencies
intelliseqngs/annoghr 1.0.0

  • version: 1.9-10
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-19.10
Latest release: almost 6 years ago - 57 downloads - 284 dependencies
vanallenlab/sv-base-mini nicole_july29_2024

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 1 year ago - 8,199 downloads - 134 dependencies
jsealock/schema_saige_utils latest

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 112 downloads - 913 dependencies
intelliseqngs/task_mt-anno 1.0.1

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 79 downloads - 646 dependencies
intelliseqngs/task_vcf-select-var-somatic 1.0.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 54 downloads - 388 dependencies
almahmoud/workshops-auto-spectratutorials latest

  • version: 1.10.2-3
  • arch: amd64
  • distro: ubuntu-20.04
  • upstream: htslib
Latest release: over 3 years ago - 89 downloads - 2,003 dependencies
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 1.7-2, 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 1 year ago - 186,109 downloads - 912 dependencies
intelliseqngs/task_vcf-anno-dbnsfp 1.3.0-chrY-and-the-rest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 65,668 downloads - 418 dependencies
intelliseqngs/task_vcf-anno-freq-exome 3.1.2-chrY-and-the-rest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 36,271 downloads - 333 dependencies
intelliseqngs/task_vcf-to-json-or-tsv 1.1.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 7,415 downloads - 233 dependencies
intelliseqngs/task_vcf-beagle-postproc 1.1.1

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 87,653 downloads - 333 dependencies
intelliseqngs/task_vcf-anno-func-var 1.6.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 3,550 downloads - 333 dependencies
intelliseqngs/task_vcf-anno-func-gene 1.3.5

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 3,362 downloads - 315 dependencies
intelliseqngs/task_vcf-acmg-bp1 2.0.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,631 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pvs1 2.0.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,896 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-bp5 2.0.2

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,601 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-ps1 2.0.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,714 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pp2 2.0.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,646 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pm1 3.0.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,798 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-bp4 3.0.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,598 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pm5 2.0.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,717 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-ps3 2.0.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,566 downloads - 334 dependencies
intelliseqngs/task_vcf-acmg-pp3 3.0.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,625 downloads - 333 dependencies
intelliseqngs/task_vcf-anno-civic 1.2.11

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: 4 months ago - 3,033 downloads - 332 dependencies
intelliseqngs/task_vcf-anno-hpo 1.0.5

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 1,605 downloads - 235 dependencies
zhiliz/autoreporting v1.0.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 20,096 downloads - 251 dependencies
intelliseqngs/task_bam-pepper 1.0.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 14,402 downloads - 366 dependencies
intelliseqngs/task_vcf-anno-snpeff-grch38.107 1.1.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 6,588 downloads - 492 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 403 downloads - 849 dependencies
intelliseqngs/prodia_task_vcf-beagle-postproc 1.0.1

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 61 downloads - 388 dependencies
rtibiocloud/saige_gds v2.1.2_613afb4

  • version: 1.10.2-3
  • arch: amd64
  • distro: ubuntu-20.04
  • upstream: htslib
Latest release: about 2 years ago - 22 downloads - 1,172 dependencies
almahmoud/bioconductor_docker RELEASE_3_20

  • version: 1.13 ds-2build1
  • arch: arm64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 1,328 downloads - 1,206 dependencies
ipbhalle/biobyte latest

  • version: 1.13+ds-2build1
  • arch: amd64
  • distro: ubuntu-22.04
  • upstream: htslib
Latest release: over 2 years ago - 28 downloads - 1,311 dependencies
intelliseqngs/task_phasing-eagle-without-ref-data 3.0.1

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 61 downloads - 256 dependencies
intelliseqngs/gsort 1.0.1

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 357 downloads - 315 dependencies
intelliseqngs/task_imputing-quality 0.0.2

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 4 years ago - 40 downloads - 355 dependencies
js2264/fourdndata 1.1.0

  • version: 1.13+ds-2build1
  • arch: amd64
  • distro: ubuntu-22.04
  • upstream: htslib
Latest release: over 2 years ago - 26 downloads - 1,273 dependencies
koki/velocytor 20221015

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 62 downloads - 1,452 dependencies
koki/workflow 20210327

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 5 years ago - 75 downloads - 1,265 dependencies
intelliseqngs/task_simulate-neat-hg38 1.0.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 5 years ago - 50 downloads - 291 dependencies
koki/biocdev 20230818

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 313 downloads - 1,504 dependencies
intelliseqngs/acmg-pp3 latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 6 years ago - 55 downloads - 265 dependencies
intelliseqngs/prodia_task_imputing-ldproxy 1.0.4-chrY-and-the-rest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 1,232 downloads - 252 dependencies
intelliseqngs/ubuntu-toolbox-22.04 1.0.3

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 148 downloads - 389 dependencies
intelliseqngs/task_cov-microdel 1.0.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 4 years ago - 27 downloads - 563 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 131 downloads - 1,081 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 116 downloads - 1,601 dependencies
intelliseqngs/task_vcf-beagle-merge 1.0.1

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 96 downloads - 388 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 4 years ago - 45 downloads - 2,335 dependencies
intelliseqngs/task_sv-breaks-pos 1.0.2

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 4 years ago - 176 downloads - 254 dependencies
intelliseqngs/dragmap-grch38-no-alt 1.1.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 186 downloads - 558 dependencies
intelliseqngs/lumpy 1.0.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 5 years ago - 167 downloads - 377 dependencies
rahulg603/gatk_samtools_docker latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 15,899 downloads - 839 dependencies
intelliseqngs/task_sv-anno-panel 1.1.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 5 years ago - 217 downloads - 354 dependencies
koki/bindsc 20220609

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 52 downloads - 2,060 dependencies
broadinstitute/pcawg_full 7

  • version: 0.2.6-2
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: about 8 years ago - 420 downloads - 889 dependencies
intelliseqngs/task_sv-annot-filter 1.0.1

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 168 downloads - 388 dependencies
intelliseqngs/task_vcf-anno-civic-evidence 1.0.13

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: 8 months ago - 1,465 downloads - 333 dependencies
intelliseqngs/snpsift 1.2.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 110 downloads - 41 dependencies
intelliseqngs/prodia_task_mobigen-models 1.1.4

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 231 downloads - 416 dependencies
intelliseqngs/prodia_task_gtc-to-vcf-grch38-no-alt 1.0.4

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 228 downloads - 635 dependencies
tercen/diffcyt_operator 0.4.4

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 135 downloads - 1,563 dependencies
tercen/flowsom_operator 1.7.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: 16 days ago - 487 downloads - 1,563 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 417 downloads - 1,367 dependencies
intelliseqngs/task_json-prioritize-var-somatic 1.0.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 54 downloads - 388 dependencies
intelliseqngs/task_fq-bowtie 1.1.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 182 downloads - 356 dependencies
intelliseqngs/pgx-phase-beagle 1.1.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 121 downloads - 396 dependencies
genieusgenomics/pbsv 2.8.0

PacBio structural variant (SV) calling and analysis tools

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 48 downloads - 384 dependencies
intelliseqngs/task_pgx-phase-beagle 1.2.1

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 767 downloads - 450 dependencies
cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 47 downloads - 1,604 dependencies
nciccbr/ccrgb_annovar v1.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 147 downloads - 854 dependencies
amcalejandro/longgwas v2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 792 downloads - 690 dependencies
intelliseqngs/collect-hs-metrics 1.0.0

  • version: 1.2.1-2ubuntu1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-16.04
Latest release: over 5 years ago - 221 downloads - 928 dependencies
mkolmogo/hapdiff 0.9

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 3,053 downloads - 250 dependencies
koki/delayedtensor-experiments 20240923

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 224 downloads - 1,295 dependencies
mjohnsonngi/wxsjointsorter 2.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 147 downloads - 509 dependencies
tercen/debarcoding_cytof_operator 0.3.2

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 198 downloads - 1,659 dependencies
yamaken37/common_factors_analysis 20230514

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 23 downloads - 1,214 dependencies
mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 54 downloads - 1,332 dependencies
intelliseqngs/task_vcf-select-var 1.0.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 476 downloads - 388 dependencies
intelliseqngs/iseq-htslib-1.16 1.0.2

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 39 downloads - 333 dependencies
vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 93,703 downloads - 1,101 dependencies
natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 273 downloads - 1,392 dependencies