broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

wilfriedguiblet/isomir v0.3

luisas/feelnc 0.1.1

intelliseqngs/bcl-to-fq 1.0.2

elle72/basic pygenometrack

sridnona/igv_reports v1.7.0

biodancer/nasap_performance latest

write later

intelliseqngs/task_bam-metrics-hg38 1.0.2

vanallenlab/sv-base-mini nicole_july29_2024

nciccbr/charlie_index latest

broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

intelliseqngs/gatk-4.1.9.0 1.0.0

intelliseqngs/task_bed-to-interval-list 1.1.5

qdidiscoveryservices/gatk-v2461_bwa_aws latest

intelliseqngs/task_imputing-quality 0.0.2

jpsmith5/peppro 0.10.2

skoyamamd/ldsc latest

qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

intelliseqngs/smoove-grch38-no-alt 1.1.0

chgyi/bio 3.5.1

intelliseqngs/gatk-4.2.4.1 1.0.1

intelliseqngs/resources-pgx-polygenic 1.2.4

rahulg603/gatk_samtools_docker latest

dhspence/docker-guideseq latest

skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

intelliseqngs/task_vcf-anno-custom 1.0.1

ctomlins/rna-seq-pipeline latest

intelliseqngs/task_calibrate-dragstr-model-grch38-no-alt 1.0.1

nciccbr/ccrgb_annovar v1.0

intelliseqngs/collect-hs-metrics 1.0.0

nciccbr/ccrgb_hlaminer v2

salvacasani/bwa latest

vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

broadinstitute/gatk-test 4.0-prerelease-1efafd2b5

qdidiscoveryservices/gatk-v2461_bwa_vardict latest

nahyunkong/mito v6

biodufpa/pp2oa advanced

biodancer/nasap latest

write later

gene110/samtools_bedtools latest

vanallenlab/g2c-vep bigWigFileOpen

sheddn/bioinformatics-tools latest

intelliseqngs/pharmcat-resources 1.1.0

yztxwd/work_gr_domain_adaptation v0.5

Docker image for Domain Adaptation project

jluebeck/ampliconsuite-pipeline v1.3.9

Docker image for AmpliconSuite-pipeline. Runscripts available at https://github.com/AmpliconSuite

gene110/vep_filter v07

skchronicles/genome-seek_trim_map v0.1.1

Official docker image for trimming and alignment with genome-seek

dhspence/docker-mocha latest

darachm/fire fire

rosadesa/freec 0.5

intelliseqngs/broad-institute-hg38 1.0.0

hoonbiolab/hmftools_sv v.2.13.2

luisas/bedtools 2

bendiz/docker-gassembly-bd v1.0

ycli1995/bioinfo_dev 1.1.0

intelliseqngs/task_gvcf-genotype-by-vcf 0.0.3

jieliu4wustl/wustl hisat3n

intelliseqngs/task_vcf-varcall-metrics-grch38-no-alt 1.1.2

bioxfu/ddngs latest

kuowenhsi/wen_omnic 1.2

Dovetail Omni-C pipeline

dhspence/docker-merqury 111621

polarisastrum/dx-cwic-project-g5jq9yq4b1q3kp4v2zqzvkkp_user-polarisastrum latest

streptomyces/reciblast latest

Reciprocal blastp for Ainsley

qx658/eas-shiny latest

arnstrm2/gatk 4.4.0

princessmaximacenter/gridss 2.13.2

kincekara/barrnap_blast latest

qtulab/miniencode latest

daemontus/software-cell-oracle latest

bsaintjo/dimelo cuda1200

intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

elle72/testthis2 vs1

intelliseqngs/task_bam-bsqr 1.2.2

intelliseqngs/prodia_task_vcf-concat-beagle 1.0.0

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

biocontainers/oncocnv v7.0_cv2

ndatth/pytorch v0.0.0

dhspence/docker-baseimage latest

samtools, picard, bedtools

intelliseqngs/gatk-4.1.7.0 1.0.4

mjohnsonngi/wxsutility 2.0

alexanrna/bedtools 2.31.0

intelliseqngs/task_bam-metrics 1.2.8

skoyamamd/metaanalysis 1.0.3

streptomyces/stage004 latest

broadinstitute/gatk-dev NVSCOREVARIANTS-PREVIEW-SNAPSHOT

GATK Development

intelliseqngs/annotsv-grch38 1.0.10

intelliseqngs/gatk_4.1.6.0 1.1.0

maxfieldkelsey/snakesenescence latest

image for use in snakemake

intelliseqngs/gatk-4.1.6.0-hg38 1.1.0