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imegusu/rstudio_rnaseq_all3 : latest
RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq
Latest release: over 1 year ago - 23 downloads - 1,568 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- ALL 1.40.0
- AnnotationDbi 1.60.2
- AnnotationFilter 1.22.0
- BH 1.81.0-1
- BSgenome 1.66.3
- Biobase 2.58.0
- BiocFileCache 2.6.1
- BiocGenerics 0.44.0
- BiocIO 1.8.0
- BiocManager 1.30.20
- BiocNeighbors 1.16.0
- BiocParallel 1.32.5
- BiocSingular 1.14.0
- BiocVersion 3.16.0
- Biostrings 2.66.0
- Cairo 1.6-0
- CoGAPS 3.18.0
- ComplexHeatmap 2.14.0
- ConsensusClusterPlus 1.62.0
- DBI 1.1.3
- DEGreport 1.34.0
- DESeq2 1.38.3
- DEoptimR 1.0-11
- DOSE 3.24.2
- DelayedArray 0.24.0
- DelayedMatrixStats 1.20.0
- EBSeq 1.38.0
- FNN 1.1.3.1
- Formula 1.2-5
- GGally 2.1.2
- GO.db 3.16.0
- GOSemSim 2.24.0
- GenomeInfoDb 1.34.9
- GenomeInfoDbData 1.2.9
- GenomicAlignments 1.34.1
- GenomicFeatures 1.50.4
- GenomicRanges 1.50.2
- GetoptLong 1.0.5
- GlobalOptions 0.1.2
- HDF5Array 1.26.0
- HDO.db 0.99.1
- Hmisc 5.0-1
- IRanges 2.32.0
- KEGGREST 1.38.0
- KernSmooth 2.23-20
- LiblineaR 2.10-22
- MASS 7.3-58.1
- Matrix 1.5-3
- MatrixGenerics 1.10.0
- MatrixModels 0.5-1
- N2R 1.0.1
- OrganismDbi 1.40.0
- ProtGenerics 1.30.0
- R.methodsS3 1.8.2
- R.oo 1.25.0
- R.utils 2.12.2
- R6 2.5.1
- RANN 2.6.1
- RBGL 1.74.0
- RColorBrewer 1.1-3
- RCurl 1.98-1.10
- RMTstat 0.3.1
- ROC 1.74.0
- ROCR 1.0-11
- RSQLite 2.3.0
- Rcpp 1.0.10
- RcppAnnoy 0.0.20
- RcppArmadillo 0.12.0.1.0
- RcppEigen 0.3.3.9.3
- RcppHNSW 0.4.1
- RcppNumerical 0.5-0
- RcppProgress 0.4.2
- RcppProgressArmadillo 0.2
- RcppProgressETA 0.1
- RcppProgressExample 0.2
- RcppRoll 0.3.0
- RcppSpdlog 0.0.12
- RcppTOML 0.2.2
- Rdpack 2.4
- RdpackTester 1.0
- ResidualMatrix 1.8.0
- Rgraphviz 2.42.0
- Rhdf5lib 1.20.0
- RhpcBLASctl 0.23-42
- Rhtslib 2.0.0
- Rook 1.2
- Rsamtools 2.14.0
- Rtsne 0.16
- S4Vectors 0.36.2
- ScaledMatrix 1.6.0
- Seurat 4.3.0
- SeuratData 0.2.2
- SeuratDisk 0.0.0.9020
- SeuratObject 4.1.3
- SeuratWrappers 0.3.1
- Signac 1.9.0
- SingleCellExperiment 1.20.0
- SparseM 1.81
- SummarizedExperiment 1.28.0
- TCC 1.38.0
- TFisher 0.2.0
- TH.data 1.1-1
- UpSetR 1.4.0
- VariantAnnotation 1.44.1
- VennDiagram 1.7.3
- XML 3.99-0.13
- XVector 0.38.0
- abind 1.4-5
- affy 1.76.0
- affyio 1.68.0
- annotate 1.76.0
- ape 5.7
- apeglm 1.20.0
- aplot 0.1.10
- askpass 1.1
- assertthat 0.2.1
- babelgene 22.9
- backports 1.4.1
- base64enc 0.1-3
- base 4.2.2
- batchelor 1.14.1
- baySeq 2.31.0
- bbmle 1.0.25
- bdsmatrix 1.3-6
- beachmat 2.14.0
- beachtest 1.0.0
- beeswarm 0.4.0
- biomaRt 2.54.0
- biovizBase 1.46.0
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.3
- blockmodeling 1.1.4
- boot 1.3-28.1
- brew 1.0-8
- brio 1.1.3
- broom 1.0.4
- bslib 0.4.2
- caTools 1.18.2
- cachem 1.0.7
- callr 3.7.3
- cellranger 1.1.0
- checkmate 2.1.0
- circlize 0.4.15
- class 7.3-20
- classInt 0.4-9
- cli 3.6.0
- clipr 0.8.0
- clue 0.3-64
- cluster 2.1.4
- clusterProfiler 4.7.1.003
- coda 0.19-4
- codetools 0.2-18
- colorspace 2.1-0
- commonmark 1.8.1
- compiler 4.2.2
- conflicted 1.2.0
- conos 1.5.0
- cowplot 1.1.1
- cpp11 0.4.3
- crayon 1.5.2
- credentials 1.3.2
- crosstalk 1.2.0
- curl 5.0.0
- data.table 1.14.8
- datasets 4.2.2
- dbplyr 2.3.1
- deldir 1.0-6
- dendextend 1.16.0
- dendsort 0.3.4
- desc 1.4.2
- devtools 2.4.5
- dichromat 2.0-0.1
- diffobj 0.3.5
- digest 0.6.31
- doParallel 1.0.17
- doSNOW 1.0.20
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- dotCall64 1.0-2
- downlit 0.4.2
- downloader 0.4
- dplyr 1.1.0
- dqrng 0.3.0
- drat 0.2.3
- dtplyr 1.3.0
- e1071 1.7-13
- edgeR 3.40.2
- ellipsis 0.3.2
- emdbook 1.3.12
- enrichplot 1.18.3
- ensembldb 2.22.0
- evaluate 0.20
- fansi 1.0.4
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- fields 14.1
- filelock 1.0.2
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- gh 1.3.1
- gitcreds 0.1.2
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- goftest 1.2-3
- googledrive 2.0.0
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- graph 1.76.0
- graphics 4.2.2
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- gridExtra 2.3
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- ids 1.0.1
- igraph 1.4.1
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- listenv 0.9.0
- littler 0.3.17
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- lmtest 0.9-40
- locfit 1.5-9.7
- logging 0.10-108
- lubridate 1.9.2
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- magrittr 2.0.3
- maps 3.4.1
- markdown 1.5
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- matrixStats 0.63.0
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- ubuntu/openjdk-11-jdk 11.0.17 8-1ubuntu2~22.04
- ubuntu/openjdk-11-jre-headless 11.0.17 8-1ubuntu2~22.04
- ubuntu/openjdk-11-jre 11.0.17 8-1ubuntu2~22.04
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- ubuntu/pango1.0-tools 1.50.6 ds-2
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- ubuntu/python3 3.10.6-1~22.04
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- ubuntu/rstudio-server 2022.12.0 353
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- ubuntu/ubuntu-keyring 2021.03.26
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