Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : geneplotter

Explore the latest package usage data for geneplotter in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 184
Total downloads: 993,015

More details on packages.ecosyste.ms - JSON

veupathdb/rserve 7

  • version: 1.76.0
Latest release: 12 months ago - 624,940 downloads - 550 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 1.76.0
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

  • version: 1.64.0
Latest release: over 2 years ago - 54,429 downloads - 352 dependencies
nfcore/chipseq dev

A docker image for nf-core/chipseq

  • version: 1.66.0
Latest release: over 3 years ago - 50,176 downloads - 309 dependencies
dhspence/docker-basespace_chromoseq latest

  • version: 1.62.0
Latest release: about 5 years ago - 38,314 downloads - 559 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 1.74.0
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 1.64.0
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
mirekphd/ml-cpu-r36-rs-cust latest

  • version: 1.56.0
Latest release: over 2 years ago - 13,673 downloads - 11,684 dependencies
mirekphd/ml-cpu-r36-base latest

  • version: 1.56.0
Latest release: over 2 years ago - 6,685 downloads - 12,259 dependencies
nfcore/circrna dev

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

  • version: 1.64.0
Latest release: about 2 years ago - 1,202 downloads - 654 dependencies
nfcore/slamseq dev

A docker image for nf-core/slamseq

  • version: 1.60.0
Latest release: over 3 years ago - 25,614 downloads - 354 dependencies
nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

  • version: 1.68.0
Latest release: almost 4 years ago - 9,677 downloads - 340 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 1.58.0
Latest release: almost 6 years ago - 762 downloads - 9,716 dependencies
dhspence/docker-homer latest

docker with chip-seq tool homer

  • version: 1.58.0
Latest release: almost 6 years ago - 702 downloads - 606 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: 1.58.0
Latest release: almost 6 years ago - 1,141 downloads - 413 dependencies
dhspence/docker-sicer latest

  • version: 1.58.0
Latest release: over 5 years ago - 765 downloads - 1,147 dependencies
qdidiscoveryservices/limma-voom 4.2.0

  • version: 1.74.0
Latest release: over 2 years ago - 1,002 downloads - 1,382 dependencies
dhspence/docker-basestation latest

  • version: 1.58.0
Latest release: over 5 years ago - 308 downloads - 1,132 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 1.66.0
Latest release: about 3 years ago - 302 downloads - 1,375 dependencies
dhspence/docker-ichor latest

  • version: 1.58.0
Latest release: over 6 years ago - 236 downloads - 961 dependencies
biocontainers/bioconductor-geneplotter v1.52.0-2-deb_cv1

  • version: 1.52.0
Latest release: over 6 years ago - 517 downloads - 430 dependencies
koki/sctensor-experiments 20220208

  • version: 1.72.0
Latest release: almost 3 years ago - 206 downloads - 2,071 dependencies
evolbioinfo/deseq2 v1.28.1

  • version: 1.66.0
Latest release: about 4 years ago - 206 downloads - 452 dependencies
qdidiscoveryservices/scrna_downstream 1.1

  • version: 1.70.0
Latest release: almost 3 years ago - 354 downloads - 1,716 dependencies
anand7899/rmarkdown latest

  • version: 1.76.0
Latest release: almost 2 years ago - 262 downloads - 766 dependencies
chgyi/bio 3.5.1

  • version: 1.58.0
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
canaantt/notitia-ocpu latest

This is part of zager/notitia.

  • version: 1.56.0
Latest release: almost 7 years ago - 153 downloads - 633 dependencies
biocontainers/bioconductor-deseq2 v1.14.1-1-deb_cv1

  • version: 1.52.0
Latest release: over 6 years ago - 155 downloads - 523 dependencies
chgyi/metaware_rna_denovo latest

  • version: 1.60.0
Latest release: over 5 years ago - 132 downloads - 2,095 dependencies
dhspence/docker-manta 1.5.0

  • version: 1.58.0
Latest release: almost 6 years ago - 126 downloads - 1,191 dependencies
atttilacs/seurat_big latest

  • version: 1.72.0
Latest release: almost 2 years ago - 495 downloads - 997 dependencies
mirekphd/ml-cpu-r35-rdp 20180918

  • version: 1.58.0
Latest release: about 6 years ago - 93 downloads - 9,486 dependencies
jafoltz/scclassify latest

  • version: 1.72.0
Latest release: almost 2 years ago - 90 downloads - 1,079 dependencies
mlepetit/ranalysis 3.3.4

  • version: 1.70.0
Latest release: almost 2 years ago - 79 downloads - 2,131 dependencies
hdsu/etbii2023 latest

  • version: 1.72.0
Latest release: almost 2 years ago - 73 downloads - 358 dependencies
millerh1/ste v1.0

  • version: 1.76.0
Latest release: almost 2 years ago - 9,929 downloads - 844 dependencies
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520

  • version: 1.64.0
Latest release: almost 5 years ago - 55 downloads - 1,313 dependencies
lorentzb/gene8940_r 1.0

  • version: 1.76.0
Latest release: almost 2 years ago - 55 downloads - 926 dependencies
dhspence/docker-vep 93

  • version: 1.58.0
Latest release: over 5 years ago - 53 downloads - 1,191 dependencies
doejgi/trinityrnaseq-wdl 2.11.0b

  • version: 1.64.0, 1.76.0
Latest release: over 1 year ago - 331 downloads - 980 dependencies
qdidiscoveryservices/batch_correction latest

  • version: 1.66.0
Latest release: almost 4 years ago - 40 downloads - 790 dependencies
koki/tensor-projects-parasite 20220819

  • version: 1.74.0
Latest release: about 2 years ago - 43 downloads - 1,281 dependencies
mirekphd/ml-cpu-r36-rs 20200131

  • version: 1.56.0
Latest release: almost 5 years ago - 34 downloads - 10,669 dependencies
bryanfisk/capybara latest

  • version: 1.72.0
Latest release: almost 2 years ago - 35 downloads - 1,067 dependencies
qdidiscoveryservices/glimma 4.2.0

  • version: 1.74.0
Latest release: over 2 years ago - 69 downloads - 1,371 dependencies
chriswyatt/svm1071deseq2limma latest

  • version: 1.72.0
Latest release: almost 3 years ago - 29 downloads - 327 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 1.76.0
Latest release: almost 2 years ago - 35 downloads - 897 dependencies
luisas/rdeanalysis latest

  • version: 1.64.0
Latest release: over 4 years ago - 29 downloads - 508 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 1.73.0
Latest release: almost 3 years ago - 28 downloads - 2,335 dependencies
qdidiscoveryservices/ssgsea-py3 latest

  • version: 1.64.0
Latest release: over 3 years ago - 28 downloads - 596 dependencies
prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

  • version: 1.72.0
Latest release: almost 2 years ago - 26 downloads - 1,382 dependencies
mlepetit/rnormalisation 1.0

  • version: 1.70.0
Latest release: almost 2 years ago - 33 downloads - 2,142 dependencies
luisas/rde latest

  • version: 1.64.0
Latest release: almost 4 years ago - 20 downloads - 549 dependencies
sheddn/bioinformatics-tools latest

  • version: 1.72.0
Latest release: almost 2 years ago - 41 downloads - 2,518 dependencies
weishwu/systempiper 12022022

  • version: 1.74.0
Latest release: almost 2 years ago - 19 downloads - 1,383 dependencies
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5

  • version: 1.78.0
Latest release: about 1 year ago - 58 downloads - 6,961 dependencies
koki/urchin_workflow_r 20220531

  • version: 1.74.0
Latest release: over 2 years ago - 17 downloads - 1,253 dependencies
luisas/r_sc latest

  • version: 1.64.0
Latest release: about 4 years ago - 18 downloads - 536 dependencies
froeuhouais/r_image latest

R image with DESeq2

  • version: 1.76.0
Latest release: almost 2 years ago - 18 downloads - 424 dependencies
yiluxiangbei/pumpkin-genomealign-notebook 1.0

  • version: 1.72.0
Latest release: almost 3 years ago - 13 downloads - 2,028 dependencies
yiluxiangbei/pumpkin-gene-genomealign 20220216

  • version: 1.72.0
Latest release: over 2 years ago - 14 downloads - 2,116 dependencies
delaugustin/r-desqeq2 v4.2

  • version: 1.72.0
Latest release: almost 2 years ago - 14 downloads - 586 dependencies
entsupml/r-with-libraries latest

  • version: 1.76.0
Latest release: over 1 year ago - 14 downloads - 992 dependencies
qdidiscoveryservices/ubuntu-1604-pipeline_docker-r_and_bioconductor latest

  • version: 1.64.0
Latest release: about 4 years ago - 13 downloads - 1,153 dependencies
chgyi/trinity 2.8.4

  • version: 1.56.0
Latest release: over 5 years ago - 13 downloads - 795 dependencies
sebeclemence/deseq2 v1.38.1

  • version: 1.76.0
Latest release: almost 2 years ago - 15 downloads - 412 dependencies
qdidiscoveryservices/sc_pip_r_and_py latest

  • version: 1.68.0
Latest release: almost 4 years ago - 12 downloads - 1,097 dependencies
evolomicsmbbt/rna_seq latest

  • version: 1.72.0
Latest release: almost 2 years ago - 62 downloads - 412 dependencies
viascientific/rstudio-app 1.0

  • version: 1.76.0
Latest release: over 1 year ago - 35 downloads - 1,074 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 1.76.0
Latest release: almost 2 years ago - 13 downloads - 598 dependencies
evolbioinfo/deseq v1.39.0

  • version: 1.66.0
Latest release: about 4 years ago - 12 downloads - 404 dependencies
luisas/r_sc.simg latest

  • version: 1.64.0
Latest release: almost 4 years ago - 12 downloads - 260 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 1.68.0
Latest release: over 3 years ago - 12 downloads - 435 dependencies
alexthiery/seurat-monocle 0.1

  • version: 1.68.0
Latest release: almost 2 years ago - 27 downloads - 1,062 dependencies
abelean/seurat_azimuth 5b

  • version: 1.72.0
Latest release: over 1 year ago - 343 downloads - 1,141 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 1.64.0
Latest release: about 4 years ago - 10 downloads - 431 dependencies
bixbeta/czid v3

  • version: 1.68.0
Latest release: over 1 year ago - 12 downloads - 421 dependencies
edkang0925/diffutr latest

  • version: 1.76.0
Latest release: over 1 year ago - 14 downloads - 532 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 1.76.0
Latest release: almost 2 years ago - 10 downloads - 598 dependencies
philipp02/pathway v1

  • version: 1.77.0
Latest release: almost 2 years ago - 10 downloads - 345 dependencies
stormgod/deepmaps-cpu latest

  • version: 1.76.0
Latest release: over 1 year ago - 31 downloads - 1,710 dependencies
sameetmehta/docker_report_apptainer devel

  • version: 1.78.0
Latest release: over 1 year ago - 9 downloads - 352 dependencies
qdidiscoveryservices/pseudobulk 1.1

  • version: 1.68.0
Latest release: over 2 years ago - 10 downloads - 1,112 dependencies
tamaraperteghella/r4_hormonit latest

  • version: 1.72.0
Latest release: over 1 year ago - 13 downloads - 1,528 dependencies
msgao/deseq2 latest

  • version: 1.72.0
Latest release: almost 2 years ago - 10 downloads - 384 dependencies
almahmoud/terra-jupyter bioc

  • version: 1.74.0
Latest release: almost 2 years ago - 9 downloads - 2,217 dependencies
ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

  • version: 1.68.0
Latest release: almost 2 years ago - 8 downloads - 406 dependencies
bixbeta/cluster_profiler v1

  • version: 1.68.0
Latest release: almost 2 years ago - 8 downloads - 1,038 dependencies
chaunceyzhou/awesome_rnaseq v1.3

  • version: 1.64.0
Latest release: about 1 year ago - 16 downloads - 465 dependencies
dsouzd04/himc_zellkonverter 1.6.5

  • version: 1.74.0
Latest release: almost 2 years ago - 25 downloads - 953 dependencies
codechenx/mice_aspergillus_infection_lung_project latest

  • version: 1.76.0
Latest release: over 1 year ago - 11 downloads - 427 dependencies
alexeymakhonin/bioinf-2022-notebook latest

  • version: 1.76.0
Latest release: almost 2 years ago - 9 downloads - 213 dependencies
alkoenig08/harmonyseurat latest

Docker container built on satijalab/seurat with Broad Institute's "Harmony" package installed.

  • version: 1.76.0
Latest release: over 1 year ago - 15 downloads - 931 dependencies
andyvs/testimage 3.0

  • version: 1.76.0
Latest release: over 1 year ago - 11 downloads - 376 dependencies
viascientific/deseq2-docker 2.0

  • version: 1.76.0
Latest release: over 1 year ago - 36 downloads - 375 dependencies