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Package Usage : deb : ubuntu/libhtscodecs2

Explore the latest package usage data for ubuntu/libhtscodecs2 in the deb ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 169
Total downloads: 33,628,889
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

lukewojenski/samtools 1.13

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 21 downloads - 120 dependencies
bioconductor/bioconductor_docker RELEASE_3_20

Bioconductor Docker Images

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 1,450,871 downloads - 1,397 dependencies
koki/urchin_workflow_seurat 20250213

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: 10 months ago - 183 downloads - 1,471 dependencies
mqmnd/samtools arm-1.13

  • version: 1.1.1-3
  • arch: arm64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 154 downloads - 120 dependencies
eppicenter/mad4hatter sha-cb4911b

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: 2 months ago - 821 downloads - 739 dependencies
intelliseqngs/task_mt-anno 1.0.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 79 downloads - 646 dependencies
intelliseqngs/task_vcf-select-var-somatic 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 54 downloads - 388 dependencies
intelliseqngs/task_vcf-anno-freq-exome 3.1.2-chrY-and-the-rest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 36,271 downloads - 333 dependencies
intelliseqngs/task_vcf-beagle-postproc 1.1.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 87,653 downloads - 333 dependencies
intelliseqngs/task_vcf-anno-func-var 1.6.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 3,550 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-bp1 2.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,631 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pvs1 2.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,896 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-bp5 2.0.2

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,601 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-ps1 2.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,714 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pp2 2.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,646 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pm1 3.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,798 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-bp4 3.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,598 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-pm5 2.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,717 downloads - 333 dependencies
intelliseqngs/task_vcf-acmg-ps3 2.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,566 downloads - 334 dependencies
intelliseqngs/task_vcf-acmg-pp3 3.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 3,625 downloads - 333 dependencies
intelliseqngs/task_vcf-anno-civic 1.2.11

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: 4 months ago - 3,033 downloads - 332 dependencies
intelliseqngs/task_vcf-anno-snpeff-grch38.107 1.1.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 6,588 downloads - 492 dependencies
intelliseqngs/prodia_task_vcf-beagle-postproc 1.0.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 53 downloads - 388 dependencies
wao2/kraken2_container latest

  • version: 1.1.1-3
  • arch: amd64
  • distro: ubuntu-22.04
  • upstream: htscodecs
Latest release: about 2 years ago - 31 downloads - 191 dependencies
almahmoud/bioconductor_docker RELEASE_3_20

  • version: 1.1.1-3
  • arch: arm64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: 12 months ago - 1,328 downloads - 1,206 dependencies
ipbhalle/biobyte latest

  • version: 1.1.1-3
  • arch: amd64
  • distro: ubuntu-22.04
  • upstream: htscodecs
Latest release: over 2 years ago - 22 downloads - 1,311 dependencies
js2264/fourdndata 1.1.0

  • version: 1.1.1-3
  • arch: amd64
  • distro: ubuntu-22.04
  • upstream: htscodecs
Latest release: over 2 years ago - 21 downloads - 1,273 dependencies
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 186,109 downloads - 912 dependencies
intelliseqngs/prodia_task_imputing-ldproxy 1.0.4-chrY-and-the-rest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 1,232 downloads - 252 dependencies
intelliseqngs/ubuntu-toolbox-22.04 1.0.3

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 148 downloads - 389 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 116 downloads - 1,601 dependencies
intelliseqngs/task_vcf-beagle-merge 1.0.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 96 downloads - 388 dependencies
intelliseqngs/dragmap-grch38-no-alt 1.1.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 186 downloads - 558 dependencies
intelliseqngs/task_sv-annot-filter 1.0.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 168 downloads - 388 dependencies
intelliseqngs/task_vcf-anno-civic-evidence 1.0.13

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: 7 months ago - 1,465 downloads - 333 dependencies
intelliseqngs/prodia_task_mobigen-models 1.1.4

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 231 downloads - 416 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 417 downloads - 1,367 dependencies
intelliseqngs/task_json-prioritize-var-somatic 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 54 downloads - 388 dependencies
intelliseqngs/task_pgx-phase-beagle 1.2.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 767 downloads - 450 dependencies
cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 47 downloads - 1,604 dependencies
salvacasani/bwa latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 186 downloads - 235 dependencies
mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 54 downloads - 1,332 dependencies
intelliseqngs/task_vcf-select-var 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 456 downloads - 388 dependencies
intelliseqngs/iseq-htslib-1.16 1.0.2

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 39 downloads - 333 dependencies
harrisonjg/freyja v1.3.11

  • version: 1.2.2-1
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.10
Latest release: almost 3 years ago - 195 downloads - 501 dependencies
natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 273 downloads - 1,392 dependencies
broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

  • version: 1.1.1-3
  • arch: amd64
  • distro: ubuntu-22.04
  • upstream: htscodecs
Latest release: 8 months ago - 40,521,415 downloads - 513 dependencies
bioconductor/r-ver 3.21-r-4.5.1

  • version: 1.6.0-1build1, 1.1.1-3
  • arch: amd64
  • distro: ubuntu-24.04
  • upstream: htscodecs
Latest release: about 2 months ago - 20,253 downloads - 1,282 dependencies
biodufpa/pp2oa advanced

  • version: 1.2.2-1
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.10
Latest release: over 2 years ago - 99 downloads - 1,124 dependencies
hailgenetics/vep-grch37-85 0.2.135

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: 5 months ago - 3,675 downloads - 367 dependencies
koki/crandev 20230814

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 229 downloads - 1,329 dependencies
bianca7/deseq2 latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 40 downloads - 1,263 dependencies
intelliseqngs/task_vcf-anno-dbsnp 1.1.1-chrY-and-the-rest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 65,907 downloads - 333 dependencies
intelliseqngs/task_vcf-anno-dbnsfp 1.3.0-chrY-and-the-rest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 65,668 downloads - 418 dependencies
bsceapm/ahatool 2.2

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 245 downloads - 40 dependencies
intelliseqngs/prodia_task_vcf-change-samplename 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 113 downloads - 333 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 60 downloads - 1,562 dependencies
jenfisher7/rstudio_sbae latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 30 downloads - 1,604 dependencies
bioconductor/ismb.osca 124cbc0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 697 downloads - 1,422 dependencies
skchronicles/genome-seek_trim_map v0.1.1

Official docker image for trimming and alignment with genome-seek

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 510 downloads - 1,367 dependencies
fabianegli/scp-recommendations-2022 1.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 28 downloads - 1,328 dependencies
weishwu/snikt 0.5.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 66 downloads - 1,253 dependencies
koki/guidedpls sha-a0875b7

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 101 downloads - 170 dependencies
intelliseqngs/task_bam-filter-chimeric 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 39 downloads - 333 dependencies
intelliseqngs/task_vcf-anno-scores 1.2.1-chrY-and-the-rest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 64,438 downloads - 633 dependencies
prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 115 downloads - 1,382 dependencies
rosadesa/freec 0.5

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 60 downloads - 662 dependencies
jmonlong/terra-rstudio-custom 0.0.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 15 downloads - 1,616 dependencies
intelliseqngs/prodia_task_vcf-qc 1.0.7

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 143 downloads - 692 dependencies
koki/chapter3_2 20240925

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 1 year ago - 54 downloads - 1,196 dependencies
koki/tensor-projects-self-incompatible 20221217

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 59 downloads - 1,264 dependencies
sgiorgetti/api-build release-109-56

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 33 downloads - 399 dependencies
imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 33 downloads - 1,568 dependencies
medicinalgenomics/star latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 30 downloads - 168 dependencies
yunagaoka/ubuntu22.04 0.1.2

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 2 years ago - 26 downloads - 1,139 dependencies
ycli1995/bioinfo_dev 1.1.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 185 downloads - 4,337 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 293 downloads - 529 dependencies
arnstrm2/rstudio 4.3.1

R studio with Bioconductor and snRNAseq packages

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 78 downloads - 1,444 dependencies
intelliseqngs/task_sv-filter 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 113 downloads - 333 dependencies
bioxfu/ddngs latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 44 downloads - 1,055 dependencies
koki/landscaper pr-24

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 654 downloads - 1,337 dependencies
wlc27/dcanr v1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 94 downloads - 1,681 dependencies
streptomyces/reciblast latest

Reciprocal blastp for Ainsley

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 104 downloads - 754 dependencies
codechenx/nafld_500_data latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 52 downloads - 1,346 dependencies
alexwaldrop/freyja v1.3.11

  • version: 1.2.2-1
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.10
Latest release: about 3 years ago - 40 downloads - 376 dependencies
louisk92/spapros_scpnmf v1.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 48 downloads - 1,422 dependencies
intelliseqngs/cnvkit 1.1.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 296 downloads - 556 dependencies
bianca7/mompreprocess latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 415 downloads - 1,340 dependencies
koki/guidedpls-experiments 20230502

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 37 downloads - 1,263 dependencies
intelliseqngs/prodia_mosdepth 1.0.0

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 24 downloads - 333 dependencies
loukaszagkoslcpuk/lcphaomicsplink latest

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: about 2 years ago - 493 downloads - 691 dependencies
ntobias85/abe_repo rbuild_reports_1.0.1

  • version: 1.1.1-3
  • arch: amd64
  • upstream: htscodecs
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 311 downloads - 1,339 dependencies