Ecosyste.ms: Docker
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abelean/seurat_azimuth : 5b
Ubuntu 20.04.2 LTS
Latest release: 12 months ago - 988 downloads - 1,141 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.56.2
- AnnotationFilter 1.18.0
- Azimuth 0.4.6.9002
- BBmisc 1.13
- BH 1.81.0-1
- BSgenome.Hsapiens.UCSC.hg38 1.4.4
- BSgenome 1.62.0
- Biobase 2.54.0
- BiocFileCache 2.2.1
- BiocGenerics 0.40.0
- BiocIO 1.4.0
- BiocManager 1.30.17
- BiocNeighbors 1.12.0
- BiocParallel 1.28.3
- BiocSingular 1.10.0
- BiocVersion 3.14.0
- Biostrings 2.62.0
- CNEr 1.30.0
- ComplexHeatmap 2.15.4
- DBI 1.1.3
- DDRTree 0.1.5
- DESeq2 1.34.0
- DEoptimR 1.0-11
- DT 0.27
- DelayedArray 0.20.0
- DelayedMatrixStats 1.16.0
- DescTools 0.99.48
- DiagrammeR 1.0.9
- DiceKriging 1.6.0
- DirichletMultinomial 1.36.0
- DoubletFinder 2.0.3
- EnsDb.Hsapiens.v86 2.99.0
- Exact 3.2
- FNN 1.1.3.2
- Formula 1.2-5
- GO.db 3.14.0
- GSEABase 1.56.0
- GSVA 1.42.0
- GenomeInfoDb 1.30.1
- GenomeInfoDbData 1.2.7
- GenomicAlignments 1.30.0
- GenomicFeatures 1.46.5
- GenomicRanges 1.46.1
- GetoptLong 1.0.5
- GlobalOptions 0.1.2
- HDF5Array 1.22.1
- HSMMSingleCell 1.14.0
- Hmisc 5.1-0
- IRanges 2.28.0
- JASPAR2020 0.99.10
- KEGGREST 1.34.0
- KernSmooth 2.23-20
- MASS 7.3-54
- MAST 1.20.0
- Matrix 1.3-3
- Matrix 1.5-4
- MatrixGenerics 1.6.0
- MatrixModels 0.5-1
- ModelMetrics 1.2.2.2
- ParamHelpers 1.14-9000
- ProtGenerics 1.26.0
- R.methodsS3 1.8.1
- R.oo 1.24.0
- R.utils 2.11.0
- R6 2.5.1
- RANN 2.6.1
- RBGL 1.70.0
- RColorBrewer 1.1-3
- RCurl 1.98-1.12
- ROCR 1.0-11
- RSQLite 2.3.1
- RSpectra 0.16-1
- RUnit 0.4.32
- Rcpp 1.0.10
- RcppAnnoy 0.0.20
- RcppArmadillo 0.12.2.0.0
- RcppEigen 0.3.3.9.3
- RcppGSL 0.3.11
- RcppGSLExample 0.0.3
- RcppHNSW 0.4.1
- RcppProgress 0.4.2
- RcppProgressArmadillo 0.2
- RcppProgressETA 0.1
- RcppProgressExample 0.2
- RcppRoll 0.3.0
- RcppTOML 0.2.2
- RcppZiggurat 0.1.6
- Rdpack 2.4
- RdpackTester 1.0
- Rfast2 0.1.3
- Rfast 2.0.6
- Rhdf5lib 1.16.0
- RhpcBLASctl 0.23-42
- Rhtslib 1.26.0
- Rsamtools 2.10.0
- Rtsne 0.16
- S4Vectors 0.32.4
- SQUAREM 2021.1
- ScaledMatrix 1.2.0
- Scillus 0.5.0
- Seurat 4.9.9.9045
- SeuratData 0.2.2.9001
- SeuratDisk 0.0.0.9020
- SeuratObject 4.9.9.9084
- Signac 1.9.0.9000
- SingleCellExperiment 1.16.0
- SparseM 1.81
- SummarizedExperiment 1.24.0
- TFBSTools 1.32.0
- TFMPvalue 0.0.9
- TFisher 0.2.0
- TH.data 1.1-1
- TMB 1.9.4
- UCell 1.3.1
- UpSetR 1.4.0
- VGAM 1.1-6
- XML 3.99-0.14
- XVector 0.34.0
- abind 1.4-5
- annotate 1.72.0
- aod 1.3.2
- ape 5.6-2
- askpass 1.1
- assertthat 0.2.1
- babelgene 22.9
- backports 1.4.1
- base64enc 0.1-3
- base 4.1.0
- beachmat 2.10.0
- beachtest 1.0.0
- beeswarm 0.4.0
- biocViews 1.62.1
- biomaRt 2.50.3
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blme 1.0-5
- blob 1.2.4
- boot 1.3-28
- brio 1.1.3
- broom 1.0.4
- bslib 0.4.2
- caTools 1.18.2
- cachem 1.0.8
- callr 3.7.3
- car 3.1-2
- carData 3.0-5
- caret 6.0-94
- cellranger 1.1.0
- checkmate 2.2.0
- circlize 0.4.15
- class 7.3-19
- cli 3.6.1
- clipr 0.8.0
- clock 0.7.0
- clue 0.3-64
- cluster 2.1.2
- codetools 0.2-18
- colorspace 2.1-0
- combinat 0.0-8
- commonmark 1.9.0
- compiler 4.1.0
- corrplot 0.92
- cowplot 1.1.1
- cpp11 0.4.3
- crayon 1.5.2
- crosstalk 1.2.0
- curl 5.0.0
- data.table 1.14.8
- datasets 4.1.0
- dbplyr 2.3.0
- deldir 1.0-6
- densityClust 0.3.2
- desc 1.4.2
- diagram 1.6.5
- diffobj 0.3.5
- digest 0.6.31
- dittoSeq 1.6.0
- doParallel 1.0.17
- docopt 0.7.1
- dotCall64 1.0-2
- downloader 0.4
- dplyr 1.1.2
- dqrng 0.3.0
- e1071 1.7-13
- edgeR 3.36.0
- ellipsis 0.3.2
- emoa 0.5-0.1
- enrichR 3.0
- ensembldb 2.18.4
- escape 1.5.1
- evaluate 0.21
- expm 0.999-7
- fansi 1.0.4
- farver 2.1.1
- fastDummies 1.6.3
- fastICA 1.2-3
- fastmap 1.1.1
- fastmatch 1.1-3
- fdrtool 1.2.17
- fields 14.1
- filelock 1.0.2
- fitdistrplus 1.1-11
- fontawesome 0.5.1
- forcats 1.0.0
- foreach 1.5.2
- foreign 0.8-81
- formatR 1.14
- formattable 0.2.1
- fs 1.6.2
- futile.logger 1.4.3
- futile.options 1.0.1
- future.apply 1.10.0
- future 1.32.0
- gargle 1.4.0
- genefilter 1.76.0
- geneplotter 1.72.0
- generics 0.1.3
- ggbeeswarm 0.7.2
- ggplot2 3.4.2
- ggpubr 0.6.0.999
- ggrepel 0.9.3
- ggridges 0.5.4
- ggsci 3.0.0
- ggsignif 0.6.4
- gld 2.6.6
- glmGamPoi 1.6.0
- glmmTMB 1.1.7
- globals 0.16.2
- glue 1.6.2
- goftest 1.2-3
- googledrive 2.1.0
- googlesheets4 1.1.0
- gower 1.0.1
- gplots 3.1.3
- grDevices 4.1.0
- graph 1.72.0
- graphics 4.1.0
- grid 4.1.0
- gridExtra 2.3
- gtable 0.3.3
- gtools 3.9.4
- hardhat 1.3.0
- harmony 0.1.1
- hdf5r 1.3.8
- here 1.0.1
- highr 0.10
- hms 1.1.3
- htmlTable 2.4.1
- htmltools 0.5.5
- htmlwidgets 1.6.2
- httpuv 1.6.11
- httr 1.4.6
- ica 1.0-3
- ids 1.0.1
- igraph 1.4.2
- influenceR 0.1.0.2
- ipred 0.9-14
- irlba 2.3.5.1
- isoband 0.2.7
- iterators 1.0.14
- jquerylib 0.1.4
- jsonlite 1.8.4
- kernlab 0.9-30
- knitr 1.42
- labeling 0.4.2
- lambda.r 1.2.4
- later 1.3.1
- lattice 0.20-44
- lava 1.7.2.1
- lazyeval 0.2.2
- leiden 0.4.3
- lhs 1.1.6
- lifecycle 1.0.3
- limma 3.50.3
- lisi 1.0
- listenv 0.9.0
- littler 0.3.12
- lme4 1.1-33
- lmerTest 3.1-3
- lmom 2.9
- lmtest 0.9-40
- locfit 1.5-9.7
- lubridate 1.9.2
- magrittr 2.0.3
- maps 3.4.1
- mathjaxr 1.6-0
- matrixStats 0.63.0
- memoise 2.0.1
- methods 4.1.0
- mgcv 1.8-35
- mime 0.12
- miniUI 0.1.1.1
- minqa 1.2.5
- misc3d 0.9-1
- mixtools 1.2.0
- mlr 2.19.1
- mlrMBO 1.1.5-9000
- mnormt 2.0.2
- monocle 2.22.0
- morebeach 1.0.0
- morebeachtests 1.0.0
- msigdbr 7.5.1
- multcomp 1.4-19
- multtest 2.50.0
- munsell 0.5.0
- muscat 1.5.2
- mutoss 0.1-12
- mvtnorm 1.1-3
- mvtnormAPI 1.0-0
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- nnet 7.3-16
- numDeriv 2016.8-1.1
- openssl 2.0.6
- org.testing.db 0.1
- pROC 1.18.2
- parallel 4.1.0
- parallelMap 1.5.1
- parallelly 1.35.0
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- pillar 1.9.0
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- plot3D 1.4
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- plotrix 3.8-2
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- poweRlaw 0.70.6
- pracma 2.4.2
- praise 1.0.0
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- prettyunits 1.1.1
- processx 3.8.1
- prodlim 2023.03.31
- progress 1.2.2
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- promises 1.2.0.1
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- ps 1.7.5
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- rbibutils 2.2.13
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- recipes 1.0.6
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- rtracklayer 1.54.0
- sandwich 3.0-1
- sass 0.4.6
- scales 1.2.1
- scater 1.22.0
- scattermore 1.0
- sctransform 0.3.5
- scuttle 1.4.0
- segmented 1.5-0
- seqLogo 1.60.0
- shape 1.4.6
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- shinydashboard 0.7.2
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- sparsesvd 0.2
- spatial 7.3-14
- spatstat.core 2.4-2
- spatstat.data 3.0-1
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- spatstat.geom 3.2-1
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- stats 4.1.0
- stringi 1.7.12
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- survival 3.2-11
- sys 3.4.1
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- tensor 1.5
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- ubuntu/mpi-default-dev 1.13
- ubuntu/ncurses-base 6.2-0ubuntu2
- ubuntu/ncurses-bin 6.2-0ubuntu2
- ubuntu/netbase 6.1
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- ubuntu/ocaml-nox 4.08.1-8
- ubuntu/ocl-icd-libopencl1 2.2.11-1ubuntu1
- ubuntu/openjdk-11-jre-headless 11.0.11 9-0ubuntu2~20.04
- ubuntu/openjdk-8-jdk-headless 8u312-b07-0ubuntu1~20.04
- ubuntu/openjdk-8-jdk 8u312-b07-0ubuntu1~20.04
- ubuntu/openjdk-8-jre-headless 8u312-b07-0ubuntu1~20.04
- ubuntu/openjdk-8-jre 8u312-b07-0ubuntu1~20.04
- ubuntu/openmpi-bin 4.0.3-0ubuntu1
- ubuntu/openmpi-common 4.0.3-0ubuntu1
- ubuntu/openssh-client 1:8.2p1-4ubuntu0.4
- ubuntu/openssl 1.1.1f-1ubuntu2.4
- ubuntu/passwd 1:4.8.1-1ubuntu5.20.04
- ubuntu/patch 2.7.6-6
- ubuntu/perl-base 5.30.0-9ubuntu0.2
- ubuntu/perl-modules-5.30 5.30.0-9ubuntu0.2
- ubuntu/perl 5.30.0-9ubuntu0.2
- ubuntu/pinentry-curses 1.1.0-3build1
- ubuntu/pkg-config 0.29.1-0ubuntu4
- ubuntu/preview-latex-style 11.91-2ubuntu2
- ubuntu/procps 2:3.3.16-1ubuntu2.1
- ubuntu/python-pip-whl 20.0.2-5ubuntu1.6
- ubuntu/python3-dev 3.8.2-0ubuntu2
- ubuntu/python3-distutils 3.8.10-0ubuntu1~20.04
- ubuntu/python3-lib2to3 3.8.10-0ubuntu1~20.04
- ubuntu/python3-minimal 3.8.2-0ubuntu2
- ubuntu/python3-pip 20.0.2-5ubuntu1.6
- ubuntu/python3-pkg-resources 45.2.0-1
- ubuntu/python3-pygments 2.3.1 dfsg-1ubuntu2.2
- ubuntu/python3-setuptools 45.2.0-1
- ubuntu/python3-wheel 0.34.2-1
- ubuntu/python3-yaml 5.3.1-1ubuntu0.1
- ubuntu/python3.8-dev 3.8.10-0ubuntu1~20.04.4
- ubuntu/python3.8-minimal 3.8.10-0ubuntu1~20.04.4
- ubuntu/python3.8 3.8.10-0ubuntu1~20.04.4
- ubuntu/python3 3.8.2-0ubuntu2
- ubuntu/readline-common 8.0-4
- ubuntu/sed 4.7-1
- ubuntu/sensible-utils 0.0.12 nmu1
- ubuntu/shared-mime-info 1.15-1
- ubuntu/sysvinit-utils 2.96-2.1ubuntu1
- ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.1
- ubuntu/tcl-dev 8.6.9 1
- ubuntu/tcl8.6-dev 8.6.10 dfsg-1
- ubuntu/tcl8.6 8.6.10 dfsg-1
- ubuntu/tcl 8.6.9 1
- ubuntu/tex-common 6.13
- ubuntu/tk-dev 8.6.9 1
- ubuntu/tk8.6-dev 8.6.10-1
- ubuntu/tk 8.6.9 1
- ubuntu/tzdata 2021a-0ubuntu0.20.04
- ubuntu/ubuntu-keyring 2020.02.11.4
- ubuntu/ubuntu-mono 19.04-0ubuntu3
- ubuntu/ucf 3.0038 nmu1
- ubuntu/unzip 6.0-25ubuntu1
- ubuntu/util-linux 2.34-0.1ubuntu9.1
- ubuntu/uuid-dev 2.34-0.1ubuntu9.3
- ubuntu/wget 1.20.3-1ubuntu2
- ubuntu/x11-common 1:7.7 19ubuntu14
- ubuntu/x11-utils 7.7 5
- ubuntu/x11proto-core-dev 2019.2-1ubuntu1
- ubuntu/x11proto-dev 2019.2-1ubuntu1
- ubuntu/x11proto-scrnsaver-dev 2019.2-1ubuntu1
- ubuntu/x11proto-xext-dev 2019.2-1ubuntu1
- ubuntu/xauth 1:1.1-0ubuntu1
- ubuntu/xbitmaps 1.1.1-2
- ubuntu/xfonts-utils 1:7.7 6
- ubuntu/xorg-sgml-doctools 1:1.11-1
- ubuntu/xterm 353-1ubuntu1.20.04.2
- ubuntu/xtrans-dev 1.4.0-1
- ubuntu/xz-utils 5.2.4-1ubuntu1
- ubuntu/zip 3.0-11build1
- ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu1.3
- ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.3
- bootswatch 3.4.1
- bootswatch 4.6.0
- bootswatch 5.2.2
- bootstrap-accessibility-plugin 1.0.6
- bootstrap-colorpicker 3.4.0
- bootstrap-sass 3.4.1
- bootstrap 4.6.0
- bootstrap 5.2.2
- bash 5.0.17
- US_export_policy:US_export_policy *
- charsets:charsets *
- cldrdata:cldrdata *
- com.ibm.icu.base:base 4.4
- com.ibm.icu.charset:icu4j-charset 60.2
- com.ibm.icu.localespi:icu4j-localespi 60.2
- com.ibm.icu:icu4j 60.2
- com.ibm.icu:icu 4.4
- com.sun:jce 1.8.0_312
- com.sun:sunec 1.8.0_312
- com.sun:sunjce_provider 1.8.0_312
- com.sun:sunpkcs11 1.8.0_312
- dnsns:dnsns *
- dt:dt *
- icedtea-sound:icedtea-sound *
- jaccess:jaccess *
- jconsole:jconsole *
- jfr:jfr 1.8.0_312
- jsse:jsse 1.8.0_312
- local_policy:local_policy *
- localedata:localedata *
- management-agent:management-agent *
- nashorn:nashorn 1.8.0_312-8u312-b07-0ubuntu1~20.04-b07
- org.GNOME.Accessibility.AtkWrapper:java-atk-wrapper *
- org.debian.security.UpdateCertificates:ca-certificates-java *
- resources:resources 1.8.0_312
- rt:rt 1.8.0_312
- sa-jdi:sa-jdi *
- tools:tools *
- zipfs:zipfs 1.8.0_312
- mypy 0.902