Ecosyste.ms: Docker
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costanzopadovano/bioconductor_r_image : jupyter_notebook_version
Docker image preconfigured with R and Bioconductor for streamlined bioinformatics data analysis.
Latest release: over 1 year ago - 25 downloads - 2,685 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.63.2
- AnnotationFilter 1.25.0
- BH 1.81.0-1
- Biobase 2.61.0
- BiocFileCache 2.9.1
- BiocGenerics 0.46.0
- BiocIO 1.11.0
- BiocManager 1.30.22
- BiocParallel 1.35.4
- BiocSingular 1.18.0
- BiocVersion 3.18.0
- Biostrings 2.69.2
- Cairo 1.6-2
- ComplexHeatmap 2.16.0
- DBI 1.1.3
- DESeq2 1.41.12
- DEoptimR 1.1-3
- DT 0.30
- DelayedArray 0.27.10
- DelayedMatrixStats 1.24.0
- EnhancedVolcano 1.19.0
- EnsDb.Hsapiens.v75 2.99.0
- FNN 1.1.3.2
- FactoMineR 2.9
- GSEABase 1.64.0
- GSVA 1.50.0
- GenSA 1.1.10.1
- GenomeInfoDb 1.37.6
- GenomeInfoDbData 1.2.10
- GenomicAlignments 1.37.0
- GenomicFeatures 1.53.2
- GenomicRanges 1.53.1
- GetoptLong 1.0.5
- GlobalOptions 0.1.2
- HDF5Array 1.30.0
- IRanges 2.34.1
- IRdisplay 1.1
- IRkernel 1.3.2
- InteractiveComplexHeatmap 1.9.2
- KEGGREST 1.41.4
- KMsurv 0.1-5
- KernSmooth 2.23-21
- KernSmooth 2.23-22
- MASS 7.3-60
- Matrix 1.5-4.1
- Matrix 1.6-4
- MatrixGenerics 1.13.1
- MatrixModels 0.5-3
- ProtGenerics 1.33.1
- R.methodsS3 1.8.2
- R.oo 1.25.0
- R.utils 2.12.3
- R6 2.5.1
- RANN 2.6.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.12
- ROCR 1.0-11
- RSQLite 2.3.1
- RSpectra 0.16-1
- Rcpp 1.0.11
- RcppAnnoy 0.0.21
- RcppArmadillo 0.12.6.4.0
- RcppEigen 0.3.3.9.4
- RcppGSL 0.3.13
- RcppGSLExample 0.0.3
- RcppHNSW 0.5.0
- RcppNumerical 0.6-0
- RcppParallel 5.1.7
- RcppProgress 0.4.2
- RcppProgressArmadillo 0.2
- RcppProgressETA 0.1
- RcppProgressExample 0.2
- RcppTOML 0.2.2
- RcppZiggurat 0.1.6
- Rdpack 2.6
- RdpackTester 1.0
- Rfast2 0.1.5.1
- Rfast 2.1.0
- Rhdf5lib 1.24.1
- RhpcBLASctl 0.23-42
- Rhtslib 2.3.0
- Rsamtools 2.17.0
- Rtsne 0.17
- S4Arrays 1.1.6
- S4Vectors 0.38.2
- ScaledMatrix 1.10.0
- Seurat 5.0.1
- SeuratObject 5.0.1
- SingleCellExperiment 1.24.0
- SparseArray 1.1.12
- SparseM 1.81
- SummarizedExperiment 1.31.1
- TFisher 0.2.0
- TH.data 1.1-2
- VGAM 1.1-9
- WriteXLS 6.4.0
- XML 3.99-0.14
- XVector 0.41.1
- abind 1.4-5
- affy 1.79.3
- affyio 1.71.0
- airway 1.21.0
- annotate 1.79.0
- ape 5.7-1
- apeglm 1.23.1
- askpass 1.2.0
- assertthat 0.2.1
- backports 1.4.1
- base64enc 0.1-3
- base 4.3.1
- bbmle 1.0.25
- bdsmatrix 1.3-6
- beachmat 2.18.0
- beachtest 1.0.0
- beeswarm 0.4.0
- biomaRt 2.57.1
- bipartite 2.19
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.4
- boot 1.3-28.1
- brew 1.0-8
- brio 1.1.3
- broom 1.0.5
- bslib 0.5.1
- caTools 1.18.2
- cachem 1.0.8
- callr 3.7.3
- car 3.1-2
- carData 3.0-5
- cellranger 1.1.0
- circlize 0.4.15
- class 7.3-22
- cli 3.6.2
- clipr 0.8.0
- clisymbols 1.2.0
- clue 0.3-65
- cluster 2.1.4
- cmprsk 2.2-11
- coda 0.19-4
- codetools 0.2-19
- cola 2.7.0
- colorspace 2.1-0
- commonmark 1.9.0
- compiler 4.3.1
- conflicted 1.2.0
- corrplot 0.92
- covr 3.6.4
- cowplot 1.1.1
- cpp11 0.4.7
- crayon 1.5.2
- credentials 2.0.1
- crosstalk 1.2.0
- curl 5.1.0
- data.table 1.14.10
- datasets 4.3.1
- dbplyr 2.3.4
- dbscan 1.1-12
- deSolve 1.40
- deldir 2.0-2
- dendextend 1.17.1
- desc 1.4.2
- devtools 2.4.5
- diffobj 0.3.5
- digest 0.6.33
- diptest 0.77-0
- doParallel 1.0.17
- doRNG 1.8.6
- docopt 0.7.1
- dotCall64 1.1-1
- downlit 0.4.3
- dplyr 1.1.4
- dqrng 0.3.2
- dtplyr 1.3.1
- ellipse 0.5.0
- ellipsis 0.3.2
- emdbook 1.3.13
- emmeans 1.8.9
- enrichR 3.2
- ensembldb 2.25.1
- estimability 1.4.1
- eulerr 7.0.0
- evaluate 0.22
- exactRankTests 0.8-35
- factoextra 1.0.7
- fansi 1.0.6
- farver 2.1.1
- fastDummies 1.7.3
- fastGHQuad 1.0.1
- fastmap 1.1.1
- fields 15.2
- filelock 1.0.2
- fitdistrplus 1.1-11
- flashClust 1.01-2
- flexmix 2.3-19
- flexsurv 2.2.2
- fontawesome 0.5.2
- forcats 1.0.0
- foreach 1.5.2
- foreign 0.8-84
- foreign 0.8-85
- formatR 1.14
- fpc 2.2-11
- fs 1.6.3
- futile.logger 1.4.3
- futile.options 1.0.1
- future.apply 1.11.0
- future 1.33.0
- gargle 1.5.2
- genefilter 1.83.1
- generics 0.1.3
- gert 2.0.0
- ggbeeswarm 0.7.2
- ggfortify 0.4.16
- ggplot2 3.4.4
- ggpubr 0.6.0
- ggrastr 1.0.2
- ggrepel 0.9.3
- ggridges 0.5.5
- ggsci 3.0.0
- ggsignif 0.6.4
- ggtext 0.1.2
- gh 1.4.0
- gitcreds 0.1.2
- globals 0.16.2
- glue 1.6.2
- goftest 1.2-3
- googledrive 2.1.1
- googlesheets4 1.1.1
- gplots 3.1.3
- grDevices 4.3.1
- graph 1.80.0
- graphics 4.3.1
- graphsim 1.0.3
- grid 4.3.1
- gridExtra 2.3
- gridtext 0.1.5
- gtable 0.3.4
- gtools 3.9.4
- harmony 1.2.0
- haven 2.5.4
- hdf5r 1.3.8
- here 1.0.1
- highr 0.10
- hms 1.1.3
- htmltools 0.5.6
- htmlwidgets 1.6.2
- httpuv 1.6.11
- httr2 0.2.3
- httr 1.4.7
- hunspell 3.0.3
- ica 1.0-3
- ids 1.0.1
- igraph 1.6.0
- impute 1.75.1
- ini 0.3.1
- irlba 2.3.5.1
- isoband 0.2.7
- iterators 1.0.14
- jpeg 0.1-10
- jquerylib 0.1.4
- jsonlite 1.8.7
- kableExtra 1.3.4
- kernlab 0.9-32
- km.ci 0.5-6
- knitr 1.44
- labeling 0.4.3
- lambda.r 1.2.4
- later 1.3.1
- lattice 0.21-8
- lattice 0.21-9
- lazyeval 0.2.2
- leaps 3.1
- leiden 0.4.3.1
- lifecycle 1.0.4
- limma 3.57.9
- listenv 0.9.0
- littler 0.3.18
- lme4 1.1-35.1
- lmtest 0.9-40
- locfit 1.5-9.8
- lubridate 1.9.3
- magrittr 2.0.3
- maps 3.4.2
- markdown 1.10
- mathjaxr 1.6-0
- matrixStats 1.0.0
- matrixcalc 1.0-6
- maxstat 0.7-25
- mclust 6.0.0
- memoise 2.0.1
- methods 4.3.1
- mgcv 1.8-42
- mgcv 1.9-0
- microbenchmark 1.4.10
- mime 0.12
- miniUI 0.1.1.1
- minqa 1.2.6
- mixtools 2.0.0
- mnormt 2.1.1
- modelr 0.1.11
- modeltools 0.2-23
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- morebeachtests 1.0.0
- mstate 0.3.2
- muhaz 1.2.6.4
- multcomp 1.4-25
- multcompView 0.1-9
- multinet 4.1.2
- multiplex 3.1.1
- munsell 0.5.0
- mvtnorm 1.2-3
- mvtnormAPI 1.0-0
- network 1.18.2
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- nlme 3.1-163
- nloptr 2.0.3
- nnet 7.3-19
- numDeriv 2016.8-1.1
- openssl 2.1.1
- org.testing.db 0.1
- parallel 4.3.1
- parallelly 1.36.0
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- pbapply 1.7-2
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- permute 0.9-7
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- pillar 1.9.0
- pkgbuild 1.4.2
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- plotly 4.10.3
- plotrix 3.8-4
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- png 0.1-8
- polyclip 1.10-6
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- polynom 1.4-1
- prabclus 2.3-3
- praise 1.0.0
- preprocessCore 1.63.1
- prettyunits 1.2.0
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- scales 1.3.0
- scattermore 1.2
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- sctransform 0.4.1
- segmented 2.0-1
- selectr 0.4-2
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- shape 1.4.6
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- sparseMatrixStats 1.14.0
- spatial 7.3-16
- spatial 7.3-17
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