Ecosyste.ms: Docker

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robertplayer/scidap-genelists : v1.0.0

Ubuntu 20.04.2 LTS

Latest release: about 1 year ago - 74 downloads - 609 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
AnnotationDbi 1.56.2
BH 1.78.0-0
Biobase 2.54.0
BiocGenerics 0.40.0
BiocIO 1.4.0
BiocManager 1.30.17
BiocNeighbors 1.12.0
BiocParallel 1.28.3
BiocSingular 1.10.0
BiocVersion 3.14.0
Biostrings 2.62.0
Cairo 1.6-0
ComplexHeatmap 2.10.0
DAseq 1.0.0
DBI 1.1.2
DDRTree 0.1.5
DESeq2 1.34.0
DEoptimR 1.0-11
DelayedArray 0.20.0
DelayedMatrixStats 1.16.0
EnhancedVolcano 1.12.0
FNN 1.1.3
GenomeInfoDb 1.30.1
GenomeInfoDbData 1.2.7
GenomicAlignments 1.30.0
GenomicRanges 1.46.1
GetoptLong 1.0.5
Glimma 2.4.0
GlobalOptions 0.1.2
HDF5Array 1.22.1
HSMMSingleCell 1.14.0
IRanges 2.28.0
KEGGREST 1.34.0
KernSmooth 2.23-20
LambertW 0.6.7-1
LoomExperiment 1.12.0
MASS 7.3-54
MAST 1.20.0
Matrix 1.3-3
MatrixGenerics 1.6.0
MatrixModels 0.5-0
ModelMetrics 1.2.2.2
Nebulosa 1.4.0
R.methodsS3 1.8.1
R.oo 1.24.0
R.utils 2.11.0
R6 2.5.1
RANN 2.6.1
RBGL 1.70.0
RColorBrewer 1.1-3
RCurl 1.98-1.6
ROCR 1.0-11
RProtoBufLib 2.6.0
RSQLite 2.2.13
RSpectra 0.16-1
RUnit 0.4.32
Rcpp 1.0.8.3
RcppAnnoy 0.0.19
RcppArmadillo 0.11.0.0.0
RcppEigen 0.3.3.9.2
RcppGSL 0.3.11
RcppGSLExample 0.0.3
RcppHNSW 0.4.1
RcppParallel 5.1.7
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppRoll 0.3.0
RcppTOML 0.1.7
RcppZiggurat 0.1.6
Rdpack 2.3
RdpackTester 1.0
ResidualMatrix 1.4.0
Rfast2 0.1.3
Rfast 2.0.6
Rhdf5lib 1.16.0
Rhtslib 1.26.0
Rsamtools 2.10.0
Rtsne 0.16
Rttf2pt1 1.3.12
S4Vectors 0.32.4
SCopeLoomR 0.13.0
SQUAREM 2021.1
ScaledMatrix 1.2.0
Seurat 4.1.0
SeuratDisk 0.0.0.9020
SeuratObject 4.1.0
Signac 1.9.0
SingleCellExperiment 1.16.0
SparseM 1.81
SummarizedExperiment 1.24.0
TFisher 0.2.0
TH.data 1.1-1
VGAM 1.1-6
XML 3.99-0.9
XVector 0.34.0
abind 1.4-5
annotate 1.72.0
ape 5.6-2
argparse 2.2.2
ash 1.0-15
askpass 1.1
backports 1.4.1
base64enc 0.1-3
base 4.1.0
batchelor 1.10.0
beachmat 2.10.0
beachtest 1.0.0
beeswarm 0.4.0
bestNormalize 1.9.0
biocViews 1.62.1
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.3
bluster 1.4.0
boot 1.3-28
brew 1.0-8
brio 1.1.3
broom 1.0.4
bslib 0.5.1
butcher 0.3.2
caTools 1.18.2
cachem 1.0.8
callr 3.7.3
caret 6.0-94
cellranger 1.1.0
circlize 0.4.15
class 7.3-19
cli 3.6.1
clipr 0.8.0
clock 0.6.1
clue 0.3-64
cluster 2.1.2
cmapR 1.6.0
codetools 0.2-18
colorspace 2.0-3
combinat 0.0-8
commonmark 1.8.0
compiler 4.1.0
conflicted 1.2.0
cowplot 1.1.1
cpp11 0.4.2
crayon 1.5.1
credentials 1.3.2
crosstalk 1.2.0
curl 4.3.2
cytolib 2.6.2
data.table 1.14.2
datasets 4.1.0
dbplyr 2.3.2
deldir 1.0-6
densityClust 0.3.2
desc 1.4.2
devtools 2.4.5
diagram 1.6.5
diffobj 0.3.5
digest 0.6.33
dittoSeq 1.6.0
doParallel 1.0.17
doRNG 1.8.6
docopt 0.7.1
downlit 0.4.2
dplyr 1.1.2
dqrng 0.3.0
dtplyr 1.3.1
e1071 1.7-13
edgeR 3.36.0
ellipsis 0.3.2
enrichR 3.0
evaluate 0.22
extrafont 0.19
extrafontdb 1.0
fansi 1.0.3
farver 2.1.0
fastICA 1.2-3
fastmap 1.1.1
fastmatch 1.1-3
findpython 1.0.8
fitdistrplus 1.1-8
flowCore 2.6.0
fontawesome 0.5.2
forcats 1.0.0
foreach 1.5.2
foreign 0.8-81
formatR 1.12
fs 1.6.3
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.9.0
future 1.25.0
gargle 1.4.0
genefilter 1.76.0
geneplotter 1.72.0
generics 0.1.2
gert 1.9.2
ggalt 0.4.0
ggbeeswarm 0.7.1
ggplot2 3.4.2
ggrastr 1.0.1
ggrepel 0.9.1
ggridges 0.5.3
gh 1.4.0
gitcreds 0.1.2
glmGamPoi 1.6.0
glmnet 4.1-7
globals 0.14.0
glue 1.6.2
goftest 1.2-3
googledrive 2.1.0
googlesheets4 1.1.0
gower 1.0.1
gplots 3.1.3
grDevices 4.1.0
graph 1.72.0
graphics 4.1.0
grid 4.1.0
gridExtra 2.3
gtable 0.3.0
gtools 3.9.2
hardhat 1.3.0
harmony 0.1.1
haven 2.5.2
hdf5r 1.3.5
here 1.0.1
highr 0.10
hms 1.1.3
hopach 2.54.0
htmltools 0.5.6.1
htmlwidgets 1.6.2
httpuv 1.6.5
httr2 0.2.2
httr 1.4.5
ica 1.0-2
ids 1.0.1
igraph 1.3.1
ini 0.3.1
ipred 0.9-14
irlba 2.3.5
isoband 0.2.5
iterators 1.0.14
jquerylib 0.1.4
jsonlite 1.8.7
kernlab 0.9-30
knitr 1.44
ks 1.14.0
labeling 0.4.2
lamW 2.1.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-44
lava 1.7.2.1
lazyeval 0.2.2
leiden 0.3.10
lifecycle 1.0.3
limma 3.50.3
listenv 0.8.0
littler 0.3.12
lmtest 0.9-40
lobstr 1.1.2
locfit 1.5-9.5
lubridate 1.9.2
magick 2.7.4
magrittr 2.0.3
maps 3.4.1
mathjaxr 1.6-0
matrixStats 0.62.0
mclust 6.0.0
memoise 2.0.1
metapod 1.2.0
methods 4.1.0
mgcv 1.8-35
mime 0.12
miniUI 0.1.1.1
misc3d 0.9-1
mixtools 1.2.0
mnormt 2.0.2
modelr 0.1.11
modules 0.10.0
monocle 2.22.0
morebeach 1.0.0
morebeachtests 1.0.0
morpheus 0.1.1.1
multcomp 1.4-19
multicool 0.1-12
multtest 2.50.0
munsell 0.5.0
mutoss 0.1-12
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-152
nnet 7.3-16
nortest 1.0-4
numDeriv 2016.8-1.1
openssl 2.0.6
org.testing.db 0.1
pROC 1.18.0
parallel 4.1.0
parallelly 1.31.1
patchwork 1.1.1
pbapply 1.5-0
pheatmap 1.0.12
pillar 1.9.0
pkgbuild 1.4.0
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.3.2
plogr 0.2.0
plot3D 1.4
plotly 4.10.0
plotrix 3.8-2
plyr 1.8.7
png 0.1-7
polyclip 1.10-0
pracma 2.4.2
praise 1.0.0
prettyunits 1.1.1
processx 3.8.1
prodlim 2023.03.31
profvis 0.3.7
progress 1.2.2
progressr 0.10.0
proj4 1.0-12
promises 1.2.0.1
proxy 0.4-26
ps 1.7.5
purrr 1.0.1
qlcMatrix 0.9.7
quantreg 5.88
ragg 1.2.5
rappdirs 0.3.3
rbibutils 2.2.8
rcmdcheck 1.4.0
readr 2.1.4
readxl 1.4.2
recipes 1.0.6
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
reprex 2.0.2
reshape2 1.4.4
restfulr 0.0.13
reticulate 1.24
rgeos 0.5-9
rhdf5 2.38.1
rhdf5filters 1.6.0
rjson 0.2.21
rlang 1.1.1
rlist 0.4.6.2
rmarkdown 2.25
rngtools 1.5.2
robustbase 0.95-0
roxygen2 7.2.3
rpart 4.1-15
rprojroot 2.0.3
rstudioapi 0.14
rsvd 1.0.5
rtracklayer 1.54.0
rversions 2.1.2
rvest 1.0.3
sandwich 3.0-1
sass 0.4.7
scDblFinder 1.8.0
scales 1.2.0
scater 1.22.0
scattermore 0.8
sceasy 0.0.7
scran 1.22.1
sctransform 0.3.3
scuttle 1.4.0
segmented 1.5-0
selectr 0.4-2
sessioninfo 1.2.2
shape 1.4.6
shiny 1.7.1
sitmo 2.0.2
slam 0.1-50
sn 2.0.2
snow 0.4-4
sourcetools 0.1.7
sp 1.4-7
sparseMatrixStats 1.6.0
sparsesvd 0.2
spatial 7.3-14
spatstat.core 2.4-2
spatstat.data 3.0-1
spatstat.explore 3.1-0
spatstat.geom 3.1-0
spatstat.random 3.1-4
spatstat.sparse 3.0-1
spatstat.utils 3.0-2
splines 4.1.0
statmod 1.5.0
stats4 4.1.0
stats 4.1.0
stringi 1.7.12
stringr 1.5.0
survival 3.2-11
sys 3.4
systemfonts 1.0.4
tcltk 4.1.0
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.7
textshaping 0.3.6
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tidyverse 2.0.0
timeDate 4022.108
timechange 0.2.0
tinytex 0.48
tmvnsim 1.0-2
tools 4.1.0
translations 4.1.0
tzdb 0.3.0
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.2
utils 4.1.0
uuid 1.1-0
uwot 0.1.11
vctrs 0.6.4
vipor 0.4.5
viridis 0.6.2
viridisLite 0.4.0
vroom 1.6.1
waldo 0.4.0
whisker 0.4.1
withr 2.5.0
xfun 0.40
xgboost 1.7.5.1
xml2 1.3.4
xopen 1.0.0
xtable 1.8-4
yaml 2.3.7
zip 2.3.0
zlibbioc 1.40.0
zoo 1.8-10

bash 5.0.17
python 3.8.10

US_export_policy:US_export_policy *
charsets:charsets *
cldrdata:cldrdata *
com.ibm.icu.base:base 4.4
com.ibm.icu.charset:icu4j-charset 60.2
com.ibm.icu.localespi:icu4j-localespi 60.2
com.ibm.icu:icu4j 60.2
com.ibm.icu:icu 4.4
com.sun:jce 1.8.0_312
com.sun:sunec 1.8.0_312
com.sun:sunjce_provider 1.8.0_312
com.sun:sunpkcs11 1.8.0_312
dnsns:dnsns *
dt:dt *
icedtea-sound:icedtea-sound *
jaccess:jaccess *
jconsole:jconsole *
jfr:jfr 1.8.0_312
jsse:jsse 1.8.0_312
local_policy:local_policy *
localedata:localedata *
management-agent:management-agent *
nashorn:nashorn 1.8.0_312-8u312-b07-0ubuntu1~20.04-b07
org.GNOME.Accessibility.AtkWrapper:java-atk-wrapper *
org.debian.security.UpdateCertificates:ca-certificates-java *
resources:resources 1.8.0_312
rt:rt 1.8.0_312
sa-jdi:sa-jdi *
tools:tools *
zipfs:zipfs 1.8.0_312

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.2.2
example 1.0.0
scale-color-perceptual 1.1.2

Cython 0.29.34
MACS2 2.2.7.1
PIMS 0.6.1
Pillow 9.5.0
PyWavelets 1.4.1
PyYAML 5.3.1
Pygments 2.3.1
aiohttp 3.8.4
aiosignal 1.3.1
anndata 0.9.1
annoy 1.17.2
anytree 2.8.0
appdirs 1.4.4
asciitree 0.3.3
async-timeout 4.0.2
attrs 23.1.0
beautifulsoup4 4.12.2
bioservices 1.11.2
biothings-client 0.3.0
cattrs 22.2.0
cellbrowser 1.1.1
certifi 2022.12.7
charset-normalizer 3.1.0
click 8.1.3
cloudpickle 2.2.1
colorama 0.4.6
colorlog 6.7.0
contourpy 1.0.7
cycler 0.11.0
dask-image 2023.3.0
dask 2023.4.0
decorator 5.1.1
docrep 0.3.2
easydev 0.12.1
entrypoints 0.4
exceptiongroup 1.1.1
fasteners 0.18
fonttools 4.39.3
frozenlist 1.3.3
fsspec 2023.4.0
gevent 22.10.2
greenlet 2.0.2
grequests 0.6.0
gseapy 0.10.4
h5py 3.8.0
idna 3.4
igraph 0.10.4
imageio 2.28.0
importlib-metadata 6.6.0
importlib-resources 5.12.0
inflect 6.0.4
joblib 1.1.0
kiwisolver 1.4.4
lazy_loader 0.2
leidenalg 0.9.1
llvmlite 0.39.1
locket 1.0.0
lxml 4.9.2
matplotlib-scalebar 0.8.1
matplotlib 3.7.1
multidict 6.0.4
mygene 3.2.2
natsort 8.3.1
networkx 3.1
numba 0.56.4
numcodecs 0.11.0
numpy 1.22.0
numpy 1.22.3
omnipath 1.0.6
packaging 23.1
pandas 2.0.1
partd 1.4.0
patsy 0.5.3
pexpect 4.8.0
pip 20.0.2
platformdirs 3.5.0
ptyprocess 0.7.0
pydantic 1.10.7
pynndescent 0.5.6
pyparsing 3.0.9
python-dateutil 2.8.2
pytz 2023.3
requests-cache 1.0.1
requests 2.29.0
scanpy 1.9.3
scikit-image 0.20.0
scikit-learn 1.0.2
scipy 1.7.3
scrublet 0.2.3
sctriangulate 0.12.0
seaborn 0.12.2
session-info 1.0.0
setuptools 45.2.0
six 1.16.0
slicerator 1.1.0
soupsieve 2.4.1
squidpy 1.2.0
statsmodels 0.13.5
stdlib-list 0.8.0
suds-community 1.1.2
texttable 1.6.7
threadpoolctl 3.1.0
tifffile 2023.4.12
toolz 0.12.0
tqdm 4.64.0
typing_extensions 4.5.0
tzdata 2023.3
umap-learn 0.5.3
url-normalize 1.4.3
urllib3 1.26.15
validators 0.20.0
wheel 0.34.2
wrapt 1.15.0
xarray 2023.1.0
xmltodict 0.13.0
yarl 1.9.2
yattag 1.15.1
zarr 2.14.2
zipp 3.15.0
zope.event 4.6
zope.interface 6.0