Ecosyste.ms: Docker

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compbiocore/dscov_sct : 20221201

Latest release: almost 2 years ago - 8 downloads - 1,031 dependencies

Dependencies

@PKGNAME@ @VERSION@
AUCell 1.20.1
AnnotationDbi 1.60.0
AnnotationFilter 1.22.0
AnnotationHub 3.6.0
BH 1.78.0-0
Biobase 2.58.0
BiocFileCache 2.6.0
BiocGenerics 0.44.0
BiocIO 1.8.0
BiocManager 1.30.19
BiocNeighbors 1.16.0
BiocParallel 1.32.3
BiocSingular 1.14.0
BiocVersion 3.16.0
Biostrings 2.66.0
ComplexHeatmap 2.14.0
DBI 1.1.3
DESeq2 1.38.1
DEoptimR 1.0-11
DOSE 3.24.2
DT 0.26
DelayedArray 0.24.0
DelayedMatrixStats 1.20.0
DirichletMultinomial 1.40.0
FNN 1.1.3.1
GENIE3 1.20.0
GO.db 3.16.0
GOSemSim 2.24.0
GSEABase 1.60.0
GenomeInfoDb 1.34.3
GenomeInfoDbData 1.2.9
GenomicRanges 1.50.1
GetoptLong 1.0.5
GlobalOptions 0.1.2
HDF5Array 1.26.0
HDO.db 0.99.1
IRanges 2.32.0
JASPAR2018 1.1.1
KEGGREST 1.38.0
KernSmooth 2.23-20
MASS 7.3-57
MAST 1.24.0
Matrix 1.4-1
Matrix 1.5-3
MatrixGenerics 1.10.0
MatrixModels 0.5-1
NMF 0.24.0
ProtGenerics 1.30.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.0
R2HTML 2.3.3
R6 2.5.1
RANN 2.6.1
RColorBrewer 1.1-3
RCurl 1.98-1.9
ROCR 1.0-11
RSQLite 2.2.18
RcisTarget 1.17.0
Rcpp 1.0.9
RcppAnnoy 0.0.20
RcppArmadillo 0.11.4.2.1
RcppEigen 0.3.3.9.3
RcppHNSW 0.4.1
RcppML 0.3.7
RcppNumerical 0.4-0
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.1.7
Rdpack 2.4
RdpackTester 1.0
ResidualMatrix 1.8.0
Rhdf5lib 1.20.0
Rtsne 0.16
S4Vectors 0.36.0
ScaledMatrix 1.6.0
Seurat 4.3.0
SeuratData 0.2.2
SeuratDisk 0.0.0.9020
SeuratObject 4.1.3
SingleCellExperiment 1.20.0
SparseM 1.81
SummarizedExperiment 1.28.0
TFMPvalue 0.0.9
TFisher 0.2.0
TH.data 1.1-1
XML 3.99-0.11
XVector 0.38.0
abind 1.4-5
affy 1.76.0
affyio 1.68.0
airway 1.18.0
annotate 1.76.0
ape 5.6-2
apeglm 1.20.0
aplot 0.1.8
arrow 10.0.0
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.1
batchelor 1.14.0
bbmle 1.0.25
bdsmatrix 1.3-6
beachmat 2.14.0
beachtest 1.0.0
beeswarm 0.4.0
biomaRt 2.54.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
boot 1.3-28
brew 1.0-8
brio 1.1.3
broom 1.0.1
bslib 0.4.1
caTools 1.18.2
cachem 1.0.6
callr 3.7.3
catdata 1.2.2
cellranger 1.1.0
checkmate 2.1.0
circlize 0.4.15
class 7.3-20
cli 3.4.1
clipr 0.8.0
clue 0.3-62
cluster 2.1.3
clusterProfiler 4.6.0
coda 0.19-4
codetools 0.2-18
colorspace 2.0-3
commonmark 1.8.1
compiler 4.2.1
covr 3.6.1
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
crosstalk 1.2.0
crul 1.3
curl 4.3.3
data.table 1.14.6
datasets 4.2.1
dbplyr 2.2.1
deldir 1.0-6
desc 1.4.2
diffobj 0.3.5
digest 0.6.30
doMC 1.3.8
doParallel 1.0.17
doRNG 1.8.2
docopt 0.7.1
downloader 0.4
dplyr 1.0.10
dqrng 0.3.0
dtplyr 1.2.2
dynamicTreeCut 1.63-1
ellipsis 0.3.2
emdbook 1.3.12
enrichplot 1.18.1
evaluate 0.18
fansi 1.0.3
farver 2.1.1
fastmap 1.1.0
fastmatch 1.1-3
fgsea 1.24.0
filelock 1.0.2
fitdistrplus 1.1-8
fontawesome 0.4.0
forcats 0.5.2
foreach 1.5.2
foreign 0.8-82
forestplot 3.1.0
formatR 1.12
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.10.0
future 1.29.0
gargle 1.2.1
geneplotter 1.76.0
generics 0.1.3
ggbeeswarm 0.6.0
ggforce 0.4.1
ggfun 0.0.7
ggnewscale 0.4.8
ggplot2 3.4.0
ggplotify 0.1.0
ggraph 2.1.0
ggrepel 0.9.2
ggridges 0.5.4
ggtree 3.6.2
gistr 0.9.0
git2r 0.30.1
glmGamPoi 1.10.0
glmnet 4.1-4
globals 0.16.2
glue 1.6.2
goftest 1.2-3
googledrive 2.0.0
googlesheets4 1.0.1
gplots 3.1.3
grDevices 4.2.1
graph 1.76.0
graphics 4.2.1
graphlayouts 0.8.3
grid 4.2.1
gridBase 0.4-7
gridExtra 2.3
gridGraphics 0.5-1
gson 0.0.9
gtable 0.3.1
gtools 3.9.4
harmony 0.1.1
haven 2.5.1
hdf5r 1.3.7
here 1.0.1
hexbin 1.28.2
highr 0.9
hms 1.1.2
htmltools 0.5.3
htmlwidgets 1.5.4
httpcode 0.3.0
httpuv 1.6.6
httr 1.4.4
ica 1.0-3
ids 1.0.1
ifnb.SeuratData 3.1.0
igraph 1.3.5
interactiveDisplayBase 1.36.0
irlba 2.3.5.1
isoband 0.2.6
iterators 1.0.14
jquerylib 0.1.4
jsonlite 1.8.3
kernlab 0.9-31
knitr 1.41
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
lazyeval 0.2.2
leiden 0.4.3
lifecycle 1.0.3
limma 3.54.0
listenv 0.8.0
littler 0.3.16
lmtest 0.9-40
lobstr 1.1.2
locfit 1.5-9.6
lpSolve 5.6.17
lubridate 1.9.0
magrittr 2.0.3
maps 3.4.1
mathjaxr 1.6-0
matrixStats 0.63.0
mclust 5.4.10
memoise 2.0.1
methods 4.2.1
mgcv 1.8-40
mime 0.12
miniUI 0.1.1.1
mixtools 1.2.0
mnormt 2.1.1
mockery 0.4.3
modelr 0.1.10
morebeach 1.0.0
morebeachtests 1.0.0
multcomp 1.4-20
multtest 2.54.0
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-157
nnet 7.3-17
numDeriv 2016.8-1.1
openssl 2.0.4
openxlsx 4.2.5.1
org.testing.db 0.1
packrat 0.8.1
parallel 4.2.1
parallelly 1.32.1
patchwork 1.1.2
pbapply 1.6-0
pbmc3k.SeuratData 3.1.4
pheatmap 1.0.12
pillar 1.8.1
pingr 2.0.2
pkgbuild 1.4.0
pkgconfig 2.0.3
pkgload 1.3.2
pkgmaker 0.32.2
plogr 0.2.0
plotly 4.10.1
plotrix 3.8-2
plyr 1.8.8
png 0.1-8
polyclip 1.10-4
poweRlaw 0.70.6
pracma 2.4.2
praise 1.0.0
preprocessCore 1.60.0
prettyunits 1.1.1
processx 3.8.0
progress 1.2.2
progressr 0.11.0
promises 1.2.0.1
pryr 0.1.5
ps 1.7.2
purrr 0.3.5
qpdf 1.3.0
quantreg 5.94
quarto 1.2
qvalue 2.30.0
ragg 1.2.4
rappdirs 0.3.3
rbibutils 2.2.10
rbokeh 0.5.2
readr 2.1.3
readxl 1.4.1
registry 0.5-1
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
reprex 2.0.2
reshape2 1.4.4
restfulr 0.0.15
reticulate 1.26
rex 1.2.1
rgeos 0.5-9
rhdf5 2.42.0
rhdf5filters 1.10.0
rjson 0.2.21
rlang 1.0.6
rmarkdown 2.18
rngtools 1.5.2
robustbase 0.95-0
rpart 4.1.16
rprojroot 2.0.3
rsconnect 0.8.28
rstudioapi 0.14
rsvd 1.0.5
rvest 1.0.3
sandwich 3.0-2
sass 0.4.4
scales 1.2.1
scattermore 0.8
scatterpie 0.1.8
sctransform 0.3.5
scuttle 1.8.1
segmented 1.6-0
selectr 0.4-2
seqLogo 1.64.0
shadowtext 0.1.2
shape 1.4.6
shiny 1.7.3
sitmo 2.0.2
smurf 1.1.3
sn 2.1.0
snow 0.4-4
sourcetools 0.1.7
sp 1.5-1
sparseMatrixStats 1.10.0
spatial 7.3-15
spatstat.core 2.4-4
spatstat.data 3.0-0
spatstat.explore 3.0-5
spatstat.geom 3.0-3
spatstat.random 3.0-1
spatstat.sparse 3.0-0
spatstat.utils 3.0-1
speedglm 0.3-4
splines 4.2.1
stats4 4.2.1
stats 4.2.1
stringi 1.7.8
stringr 1.4.1
survival 3.3-1
sys 3.4.1
systemfonts 1.0.4
tcltk 4.2.1
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.5
textshaping 0.3.6
tibble 3.1.8
tidygraph 1.2.2
tidyr 1.2.1
tidyselect 1.2.0
tidytree 0.4.1
tidyverse 1.3.2
timechange 0.1.1
tinytex 0.42
tools 4.2.1
translations 4.2.1
treeio 1.22.0
triebeard 0.3.0
tweenr 2.0.2
tzdb 0.3.0
urltools 1.7.3
utf8 1.2.2
utils 4.2.1
uuid 1.1-0
uwot 0.1.14
vctrs 0.5.1
vipor 0.4.5
viridis 0.6.2
viridisLite 0.4.1
vroom 1.6.0
vsn 3.66.0
waldo 0.4.0
webfakes 1.1.6
webshot 0.5.4
withr 2.5.0
xfun 0.35
xml2 1.3.3
xtable 1.8-4
yaml 2.3.6
yulab.utils 0.0.5
zip 2.2.2
zlibbioc 1.44.0
zoo 1.8-11

bash 5.0.17

github.com/evanw/esbuild v0.0.0-20220511215310-7abb7d8496d4
golang.org/x/sys v0.0.0-20210908233432-aa78b53d3365
stdlib 1.18.1