Ecosyste.ms: Docker

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abelean/seurat_deg : 4.1.0

Ubuntu 20.04.2 LTS

Latest release: almost 2 years ago - 12 downloads - 1,083 dependencies

Dependencies

@PKGNAME@ @VERSION@
AnnotationDbi 1.56.2
BBmisc 1.13
BH 1.81.0-1
Biobase 2.54.0
BiocGenerics 0.40.0
BiocIO 1.4.0
BiocManager 1.30.17
BiocNeighbors 1.12.0
BiocParallel 1.28.3
BiocSingular 1.10.0
BiocVersion 3.14.0
Biostrings 2.62.0
ComplexHeatmap 2.15.1
DBI 1.1.3
DDRTree 0.1.5
DESeq2 1.34.0
DEoptimR 1.0-11
DelayedArray 0.20.0
DelayedMatrixStats 1.16.0
DiagrammeR 1.0.9
DiceKriging 1.6.0
DoubletFinder 2.0.3
FNN 1.1.3.1
Formula 1.2-4
GSEABase 1.56.0
GSVA 1.42.0
GenomeInfoDb 1.30.1
GenomeInfoDbData 1.2.7
GenomicRanges 1.46.1
GetoptLong 1.0.5
GlobalOptions 0.1.2
HDF5Array 1.22.1
HSMMSingleCell 1.14.0
Hmisc 4.8-0
IRanges 2.28.0
KEGGREST 1.34.0
KernSmooth 2.23-20
MASS 7.3-54
MAST 1.20.0
Matrix 1.3-3
Matrix 1.5-3
MatrixGenerics 1.6.0
MatrixModels 0.5-1
ModelMetrics 1.2.2.2
ParamHelpers 1.14-9000
R.methodsS3 1.8.1
R.oo 1.24.0
R.utils 2.11.0
R6 2.5.1
RANN 2.6.1
RBGL 1.70.0
RColorBrewer 1.1-3
RCurl 1.98-1.10
RJSONIO 1.3-1.8
ROCR 1.0-11
RSQLite 2.2.20
RSpectra 0.16-1
RUnit 0.4.32
Rcpp 1.0.10
RcppAnnoy 0.0.20
RcppArmadillo 0.11.4.4.0
RcppEigen 0.3.3.9.3
RcppGSL 0.3.11
RcppGSLExample 0.0.3
RcppHNSW 0.4.1
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.2.2
RcppZiggurat 0.1.6
Rdpack 2.4
RdpackTester 1.0
Rfast2 0.1.3
Rfast 2.0.6
Rhdf5lib 1.16.0
RhpcBLASctl 0.23-42
Rtsne 0.16
S4Vectors 0.32.4
SQUAREM 2021.1
ScaledMatrix 1.2.0
Seurat 4.3.0
SeuratDisk 0.0.0.9020
SeuratObject 4.1.3
SingleCellExperiment 1.16.0
SparseM 1.81
SummarizedExperiment 1.24.0
TFisher 0.2.0
TH.data 1.1-1
TMB 1.9.2
UCell 1.3.1
UpSetR 1.4.0
VGAM 1.1-6
XML 3.99-0.13
XVector 0.34.0
abind 1.4-5
annotate 1.72.0
aod 1.3.2
ape 5.6-2
askpass 1.1
babelgene 22.9
backports 1.4.1
base64enc 0.1-3
base 4.1.0
beachmat 2.10.0
beachtest 1.0.0
beeswarm 0.4.0
biocViews 1.62.1
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blme 1.0-5
blob 1.2.3
boot 1.3-28
brio 1.1.3
broom 1.0.3
bslib 0.4.2
caTools 1.18.2
cachem 1.0.6
callr 3.7.3
car 3.1-1
carData 3.0-5
caret 6.0-93
checkmate 2.1.0
circlize 0.4.15
class 7.3-19
cli 3.6.0
clipr 0.8.0
clock 0.6.1
clue 0.3-64
cluster 2.1.2
codetools 0.2-18
colorspace 2.1-0
combinat 0.0-8
commonmark 1.8.1
compiler 4.1.0
corrplot 0.92
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
crosstalk 1.2.0
curl 5.0.0
data.table 1.14.6
datasets 4.1.0
deldir 1.0-6
densityClust 0.3.2
desc 1.4.2
diffobj 0.3.5
digest 0.6.31
doParallel 1.0.17
docopt 0.7.1
dotCall64 1.0-2
downloader 0.4
dplyr 1.1.0
dqrng 0.3.0
e1071 1.7-13
edgeR 3.36.0
ellipsis 0.3.2
emoa 0.5-0.1
enrichR 3.0
escape 1.5.1
evaluate 0.20
fansi 1.0.4
farver 2.1.1
fastICA 1.2-3
fastmap 1.1.0
fastmatch 1.1-3
fdrtool 1.2.17
fields 14.1
fitdistrplus 1.1-8
fontawesome 0.5.0
foreach 1.5.2
foreign 0.8-81
formatR 1.14
fs 1.6.1
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.10.0
future 1.31.0
genefilter 1.76.0
geneplotter 1.72.0
generics 0.1.3
ggbeeswarm 0.7.1
ggplot2 3.4.1
ggpubr 0.6.0.999
ggrepel 0.9.3
ggridges 0.5.4
ggsci 2.9
ggsignif 0.6.4
glmGamPoi 1.6.0
glmmTMB 1.1.5
globals 0.16.2
glue 1.6.2
goftest 1.2-3
gower 1.0.1
gplots 3.1.3
grDevices 4.1.0
graph 1.72.0
graphics 4.1.0
grid 4.1.0
gridExtra 2.3
gtable 0.3.1
gtools 3.9.4
hardhat 1.2.0
harmony 0.1.1
hdf5r 1.3.5
here 1.0.1
highr 0.10
hms 1.1.2
htmlTable 2.4.1
htmltools 0.5.4
htmlwidgets 1.6.1
httpuv 1.6.9
httr 1.4.4
ica 1.0-3
igraph 1.4.0
influenceR 0.1.0.1
interp 1.1-3
ipred 0.9-13
irlba 2.3.5.1
isoband 0.2.7
iterators 1.0.14
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.8.4
kernlab 0.9-30
knitr 1.42
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-44
latticeExtra 0.6-30
lava 1.7.1
lazyeval 0.2.2
leiden 0.4.3
lhs 1.1.6
lifecycle 1.0.3
limma 3.50.3
lisi 1.0
listenv 0.9.0
littler 0.3.12
lme4 1.1-31
lmerTest 3.1-3
lmtest 0.9-40
locfit 1.5-9.7
lubridate 1.9.2
magrittr 2.0.3
maps 3.4.1
mathjaxr 1.6-0
matrixStats 0.63.0
mco 1.15.6
memoise 2.0.1
methods 4.1.0
mgcv 1.8-35
mime 0.12
miniUI 0.1.1.1
minqa 1.2.5
misc3d 0.9-1
mixtools 1.2.0
mlr 2.19.1
mlrMBO 1.1.5-9000
mnormt 2.0.2
monocle 2.22.0
morebeach 1.0.0
morebeachtests 1.0.0
msigdbr 7.5.1
multcomp 1.4-19
multtest 2.50.0
munsell 0.5.0
muscat 1.5.2
mutoss 0.1-12
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nichenetr 1.1.1
nlme 3.1-152
nloptr 2.0.3
nnet 7.3-16
numDeriv 2016.8-1.1
openssl 2.0.5
org.testing.db 0.1
pROC 1.18.0
parallel 4.1.0
parallelMap 1.5.1
parallelly 1.34.0
patchwork 1.1.2
pbapply 1.7-0
pbkrtest 0.5.2
pheatmap 1.0.12
pillar 1.8.1
pkgconfig 2.0.3
pkgload 1.3.2
plogr 0.2.0
plot3D 1.4
plotly 4.10.1
plotrix 3.8-2
plyr 1.8.8
png 0.1-8
polyclip 1.10-4
polynom 1.4-1
praise 1.0.0
prettyunits 1.1.1
processx 3.8.0
prodlim 2019.11.13
progress 1.2.2
progressr 0.13.0
promises 1.2.0.1
proxy 0.4-27
ps 1.7.2
purrr 1.0.1
qlcMatrix 0.9.7
quantreg 5.94
randomForest 4.7-1.1
rappdirs 0.3.3
rbibutils 2.2.13
readr 2.1.4
recipes 1.0.4
rematch2 2.1.2
remotes 2.4.2
reshape2 1.4.4
restfulr 0.0.13
reticulate 1.28
rgeos 0.5-9
rhdf5 2.38.1
rhdf5filters 1.6.0
rjson 0.2.21
rlang 1.0.6
rmarkdown 2.20
robustbase 0.95-0
rpart 4.1-15
rprojroot 2.0.3
rstatix 0.7.2
rstudioapi 0.14
rsvd 1.0.5
sandwich 3.0-1
sass 0.4.5
scales 1.2.1
scater 1.22.0
scattermore 0.8
sctransform 0.3.5
scuttle 1.4.0
segmented 1.5-0
shape 1.4.6
shiny 1.7.4
sitmo 2.0.2
slam 0.1-50
smoof 1.6.0.3
sn 2.0.2
snow 0.4-4
sourcetools 0.1.7-1
sp 1.6-0
spam 2.9-1
sparseMatrixStats 1.6.0
sparsesvd 0.2
spatial 7.3-14
spatstat.core 2.4-2
spatstat.data 3.0-0
spatstat.explore 3.0-6
spatstat.geom 3.0-6
spatstat.random 3.1-3
spatstat.sparse 3.0-0
spatstat.utils 3.0-1
splines 4.1.0
statmod 1.5.0
stats4 4.1.0
stats 4.1.0
stringi 1.7.12
stringr 1.5.0
survival 3.2-11
sys 3.4.1
tcltk 4.1.0
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.6
tibble 3.1.8
tidyr 1.3.0
tidyselect 1.2.0
timeDate 4022.108
timechange 0.2.0
tinytex 0.44
tmvnsim 1.0-2
tools 4.1.0
translations 4.1.0
tzdb 0.3.0
utf8 1.2.3
utils 4.1.0
uwot 0.1.14
variancePartition 1.24.1
vctrs 0.5.2
vipor 0.4.5
viridis 0.6.2
viridisLite 0.4.1
visNetwork 2.1.2
vroom 1.6.1
waldo 0.4.0
withr 2.5.0
xfun 0.37
xtable 1.8-4
yaml 2.3.7
zlibbioc 1.40.0
zoo 1.8-11

bash 5.0.17

mypy 0.902