Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
yosuketanigawa/rocker-geospatial-seurat : latest
Docker image of Seurat installed on R Studio
Latest release: over 1 year ago - 75 downloads - 512 dependencies
JSONDependencies
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.58.0
- BH 1.81.0-1
- Biobase 2.56.0
- BiocGenerics 0.42.0
- BiocIO 1.6.0
- BiocManager 1.30.20
- BiocParallel 1.30.4
- BiocVersion 3.15.2
- Biostrings 2.64.1
- DBI 1.1.3
- DDRTree 0.1.5
- DESeq2 1.36.0
- DEoptimR 1.0-11
- DelayedArray 0.22.0
- DelayedMatrixStats 1.18.2
- DiagrammeR 1.0.9
- FNN 1.1.3.1
- GenomeInfoDb 1.32.4
- GenomeInfoDbData 1.2.8
- GenomicAlignments 1.32.1
- GenomicRanges 1.48.0
- HDF5Array 1.24.2
- HSMMSingleCell 1.16.0
- IRanges 2.30.1
- KEGGREST 1.36.3
- KernSmooth 2.23-20
- Lahman 10.0-1
- LearnBayes 2.15.1
- MASS 7.3-56
- MAST 1.22.0
- Matrix 1.4-1
- Matrix 1.5-3
- MatrixGenerics 1.8.1
- MatrixModels 0.5-1
- R.methodsS3 1.8.2
- R.oo 1.25.0
- R.utils 2.12.2
- R6 2.5.1
- RANN 2.6.1
- RBGL 1.72.0
- RColorBrewer 1.1-3
- RCurl 1.98-1.10
- RMariaDB 1.2.2
- RNetCDF 2.5-2
- ROCR 1.0-11
- RPostgres 1.4.4
- RSQLite 2.2.14
- RUnit 0.4.32
- Rcpp 1.0.10
- RcppAnnoy 0.0.20
- RcppArmadillo 0.12.0.1.0
- RcppEigen 0.3.3.9.3
- RcppGSL 0.3.13
- RcppGSLExample 0.0.3
- RcppProgress 0.4.2
- RcppProgressArmadillo 0.2
- RcppProgressETA 0.1
- RcppProgressExample 0.2
- RcppTOML 0.2.2
- RcppZiggurat 0.1.6
- Rdpack 2.4
- RdpackTester 1.0
- Rfast2 0.1.4
- Rfast 2.0.7
- Rhdf5lib 1.18.2
- Rhtslib 1.28.0
- Rsamtools 2.12.0
- Rtsne 0.16
- S4Vectors 0.34.0
- Seurat 4.3.0
- SeuratDisk 0.0.0.9020
- SeuratObject 4.1.3
- SingleCellExperiment 1.18.1
- SparseM 1.81
- SummarizedExperiment 1.26.1
- TFisher 0.2.0
- TH.data 1.1-1
- VGAM 1.1-8
- XML 3.99-0.10
- XVector 0.36.0
- abind 1.4-5
- annotate 1.74.0
- ape 5.7-1
- arrow 8.0.0
- askpass 1.1
- assertthat 0.2.1
- backports 1.4.1
- base64enc 0.1-3
- base 4.2.0
- beachmat 2.12.0
- beachtest 1.0.0
- biocViews 1.64.1
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.3
- blogdown 1.10
- bookdown 0.27
- boot 1.3-28
- brew 1.0-7
- brio 1.1.3
- broom 0.8.0
- bslib 0.4.2
- caTools 1.18.2
- cachem 1.0.7
- callr 3.7.0
- cellranger 1.1.0
- class 7.3-20
- classInt 0.4-7
- cli 3.6.0
- clipr 0.8.0
- cluster 2.1.3
- coda 0.19-4
- codetools 0.2-18
- colorspace 2.1-0
- combinat 0.0-8
- commonmark 1.8.1
- compiler 4.2.0
- covr 3.5.1
- cowplot 1.1.1
- cpp11 0.4.3
- crayon 1.5.2
- credentials 1.3.2
- crosstalk 1.2.0
- curl 5.0.0
- data.table 1.14.8
- datasets 4.2.0
- dbplyr 2.2.0
- deldir 1.0-6
- desc 1.4.1
- devtools 2.4.3
- dichromat 2.0-0.1
- diffobj 0.3.5
- digest 0.6.31
- distill 1.4
- docopt 0.7.1
- downlit 0.4.0
- downloader 0.4
- dplyr 1.1.0
- dqrng 0.3.0
- dtplyr 1.2.1
- duckdb 0.4.0
- e1071 1.7-11
- ellipsis 0.3.2
- enrichR 3.1
- evaluate 0.20
- expm 0.999-6
- fansi 1.0.4
- farver 2.1.1
- fastICA 1.2-3
- fastmap 1.1.1
- fitdistrplus 1.1-8
- fontawesome 0.5.0
- forcats 0.5.1
- foreign 0.8-82
- formatR 1.14
- fs 1.6.1
- fst 0.9.8
- fstcore 0.9.12
- futile.logger 1.4.3
- futile.options 1.0.1
- future.apply 1.10.0
- future 1.32.0
- gargle 1.2.0
- gdata 2.18.0.1
- genefilter 1.78.0
- geneplotter 1.74.0
- generics 0.1.3
- geojsonsf 2.0.3
- geometries 0.2.0
- geosphere 1.5-14
- gert 1.6.0
- ggplot2 3.4.1
- ggrepel 0.9.3
- ggridges 0.5.4
- gh 1.3.0
- gitcreds 0.1.1
- glmGamPoi 1.8.0
- globals 0.16.2
- glue 1.6.2
- gmodels 2.18.1.1
- goftest 1.2-3
- googledrive 2.0.0
- googlesheets4 1.0.0
- gplots 3.1.3
- grDevices 4.2.0
- graph 1.74.0
- graphics 4.2.0
- grid 4.2.0
- gridExtra 2.3
- gstat 2.0-9
- gtable 0.3.1
- gtools 3.9.4
- haven 2.5.0
- hdf5r 1.3.8
- here 1.0.1
- highr 0.10
- hms 1.1.1
- htmltools 0.5.4
- htmlwidgets 1.6.1
- httpuv 1.6.9
- httr 1.4.5
- ica 1.0-3
- ids 1.0.1
- igraph 1.4.1
- influenceR 0.1.0.1
- ini 0.3.1
- intervals 0.15.2
- irlba 2.3.5.1
- isoband 0.2.7
- jquerylib 0.1.4
- jsonify 1.2.1
- jsonlite 1.8.4
- kernlab 0.9-32
- knitr 1.42
- labeling 0.4.2
- lambda.r 1.2.4
- later 1.3.0
- lattice 0.20-45
- lazyeval 0.2.2
- leafem 0.2.0
- leaflet.providers 1.9.0
- leaflet 2.1.1
- leafpop 0.1.0
- leafsync 0.1.0
- leiden 0.4.3
- leidenbase 0.1.14
- lidR 4.0.1
- lifecycle 1.0.3
- limma 3.52.4
- linkXTS 1.0
- listenv 0.9.0
- littler 0.3.15
- lmtest 0.9-40
- locfit 1.5-9.7
- lubridate 1.8.0
- lwgeom 0.2-8
- magrittr 2.0.3
- mapdata 2.3.0
- maps 3.4.0
- maptools 1.1-4
- mapview 2.11.0
- markdown 1.1
- mathjaxr 1.6-0
- matrixStats 0.63.0
- memoise 2.0.1
- metap 1.8
- methods 4.2.0
- mgcv 1.8-40
- mime 0.12
- miniUI 0.1.1.1
- mixtools 2.0.0
- mnormt 2.1.1
- modelr 0.1.8
- monocle 2.24.1
- morebeach 1.0.0
- morebeachtests 1.0.0
- multcomp 1.4-23
- multtest 2.52.0
- munsell 0.5.0
- mutoss 0.1-13
- mvtnorm 1.1-3
- mvtnormAPI 1.0-0
- ncdf4 1.19
- ncmeta 0.3.0
- nlme 3.1-157
- nnet 7.3-17
- numDeriv 2016.8-1.1
- nycflights13 1.0.2
- openssl 2.0.6
- org.testing.db 0.1
- packrat 0.8.0
- parallel 4.2.0
- parallelly 1.34.0
- patchwork 1.1.2
- pbapply 1.7-0
- pheatmap 1.0.12
- pillar 1.8.1
- pkgbuild 1.3.1
- pkgconfig 2.0.3
- pkgload 1.2.4
- plogr 0.2.0
- plotly 4.10.1
- plotrix 3.8-2
- plyr 1.8.8
- png 0.1-8
- polyclip 1.10-4
- praise 1.0.0
- prettyunits 1.1.1
- processx 3.6.1
- progress 1.2.2
- progressr 0.13.0
- proj4 1.0-11
- promises 1.2.0.1
- proxy 0.4-27
- ps 1.7.1
- purrr 1.0.1
- qlcMatrix 0.9.7
- qqconf 1.3.1
- quantreg 5.94
- r2d3 0.2.6
- rJava 1.0-6
- rapidjsonr 1.2.0
- rappdirs 0.3.3
- raster 3.5-15
- rbibutils 2.2.13
- rcmdcheck 1.4.0
- readr 2.1.2
- readxl 1.4.0
- redland 1.0.17-16
- rematch2 2.1.2
- rematch 1.0.1
- remotes 2.4.2
- reprex 2.0.1
- reshape2 1.4.4
- restfulr 0.0.15
- reticulate 1.28
- rex 1.2.1
- rgdal 1.5-32
- rgeos 0.6-2
- rgl 0.109.2
- rhdf5 2.40.0
- rhdf5filters 1.8.0
- rjson 0.2.21
- rlang 1.1.0
- rlas 1.6.0
- rmarkdown 2.20
- rmdshower 2.1.1
- robustbase 0.95-0
- roxygen2 7.2.0
- rpart 4.1.16
- rprojroot 2.0.3
- rsconnect 0.8.26
- rstudioapi 0.13
- rticles 0.23
- rtracklayer 1.56.1
- rversions 2.1.1
- rvest 1.0.2
- s2 1.0.7
- sandwich 3.0-2
- sass 0.4.5
- satellite 1.0.4
- scales 1.2.1
- scattermore 0.8
- sctransform 0.3.5
- segmented 1.6-2
- selectr 0.4-2
- servr 0.24
- sessioninfo 1.2.2
- sf 1.0-7
- sfheaders 0.4.0
- shiny 1.7.4
- sitmo 2.0.2
- slam 0.1-50
- sn 2.1.0
- snow 0.4-4
- sourcetools 0.1.7-1
- sp 1.6-0
- spData 2.0.1
- spacetime 1.2-8
- sparseMatrixStats 1.8.0
- sparsesvd 0.2-2
- spatial 7.3-15
- spatialreg 1.2-3
- spatstat.core 2.4-4
- spatstat.data 3.0-1
- spatstat.explore 3.1-0
- spatstat.geom 3.1-0
- spatstat.linnet 2.3-2
- spatstat.random 3.1-4
- spatstat.sparse 3.0-1
- spatstat.utils 3.0-2
- spatstat 2.3-4
- spdep 1.2-4
- splines 4.2.0
- stars 0.5-5
- stats4 4.2.0
- stats 4.2.0
- stringi 1.7.12
- stringr 1.5.0
- survival 3.3-1
- svglite 2.1.0
- sys 3.4.1
- systemfonts 1.0.4
- tcltk 4.2.0
- tensor 1.5
- terra 1.5-34
- testRcppAttributePackage 1.0
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testit 0.13
- testthat 3.1.4
- tibble 3.2.0
- tidync 0.2.4
- tidyr 1.3.0
- tidyselect 1.2.0
- tidyverse 1.3.1
- tinytex 0.44
- tmap 3.3-3
- tmaptools 3.1-1
- tools 4.2.0
- translations 4.2.0
- tufte 0.12
- tzdb 0.3.0
- units 0.8-0
- usethis 2.1.6
- utf8 1.2.3
- utils 4.2.0
- uuid 1.1-0
- uwot 0.1.14
- vctrs 0.5.2
- viridis 0.6.2
- viridisLite 0.4.1
- visNetwork 2.1.0
- vroom 1.5.7
- waldo 0.4.0
- webshot 0.5.3
- whisker 0.4
- whoami 1.3.0
- widgetframe 0.3.1
- withr 2.5.0
- wk 0.6.0
- xaringan 0.25
- xfun 0.37
- xml2 1.3.3
- xopen 1.0.0
- xtable 1.8-4
- xts 0.12.1
- yaml 2.3.7
- zip 2.2.0
- zlibbioc 1.42.0
- zoo 1.8-11
- github.com/evanw/esbuild (devel)
- github.com/evanw/esbuild v0.0.0-20220511215310-7abb7d8496d4
- golang.org/x/sys v0.0.0-20200501145240-bc7a7d42d5c3
- golang.org/x/sys v0.0.0-20210908233432-aa78b53d3365
- stdlib 1.16.3
- stdlib 1.18.1
- JRI:JRI *
- JRIEngine:JRIEngine *
- REngine:REngine *
- US_export_policy:US_export_policy *
- charsets:charsets *
- cldrdata:cldrdata *
- com.sun:jce 1.8.0_362
- com.sun:sunec 1.8.0_362
- com.sun:sunjce_provider 1.8.0_362
- com.sun:sunpkcs11 1.8.0_362
- dnsns:dnsns *
- dt:dt *
- icedtea-sound:icedtea-sound *
- jaccess:jaccess *
- jconsole:jconsole *
- jfr:jfr 1.8.0_362
- jrt-fs:jrt-fs 11.0.16
- jsse:jsse 1.8.0_362
- local_policy:local_policy *
- localedata:localedata *
- management-agent:management-agent *
- nashorn:nashorn 1.8.0_362-8u362-ga-0ubuntu1~20.04.1-b09
- org.GNOME.Accessibility.AtkWrapper:java-atk-wrapper *
- org.debian.security.UpdateCertificates:ca-certificates-java *
- resources:resources 1.8.0_362
- rt:rt 1.8.0_362
- sa-jdi:sa-jdi *
- tools:tools *
- zipfs:zipfs 1.8.0_362
- bootstrap-accessibility-plugin 1.0.6
- bootstrap-colorpicker 3.4.0
- bootstrap-sass 3.4.1
- bootstrap 4.6.0
- bootstrap 5.2.2
- bootswatch 3.4.1
- bootswatch 4.6.0
- bootswatch 5.2.2
- casperjs 1.1.0-beta5
- context 1.0.0
- leaflet-omnivore 0.3.4
- leaflet.markercluster 1.1.0
- rmdshower 1.0.0
- shower-core 2.0.6
- shower-material 1.0.4
- shower-ribbon 2.0.5
- shower 2.1.1
- GDAL 3.0.4
- PyYAML 5.3.1
- Pygments 2.3.1
- argparse 1.2.1
- importlib-metadata 6.0.0
- joblib 1.2.0
- llvmlite 0.39.1
- numba 0.56.4
- numpy 1.17.4
- pip 20.0.2
- pynndescent 0.5.8
- scikit-learn 1.2.2
- scipy 1.10.1
- setuptools 44.0.0
- setuptools 45.2.0
- threadpoolctl 3.1.0
- tqdm 4.65.0
- umap-learn 0.5.3
- wheel 0.34.2
- wsgiref 0.1.2
- zipp 3.15.0