Ecosyste.ms: Docker
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koki/urchin_workflow_seurat : 20230616
Latest release: over 1 year ago - 63 downloads - 1,471 dependencies
JSONDependencies
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.60.2
- BH 1.81.0-1
- Biobase 2.58.0
- BiocGenerics 0.44.0
- BiocIO 1.8.0
- BiocManager 1.30.20
- BiocNeighbors 1.16.0
- BiocParallel 1.32.6
- BiocSingular 1.14.0
- BiocStyle 2.26.0
- BiocVersion 3.16.0
- Biostrings 2.66.0
- Cairo 1.6-0
- DBI 1.1.3
- DEoptimR 1.0-12
- DelayedArray 0.24.0
- DelayedMatrixStats 1.20.0
- FNN 1.1.3.2
- GO.db 3.16.0
- GSEABase 1.60.0
- GenomeInfoDb 1.34.9
- GenomeInfoDbData 1.2.9
- GenomicAlignments 1.34.1
- GenomicRanges 1.50.2
- HDF5Array 1.26.0
- IRanges 2.32.0
- KEGGREST 1.38.0
- KernSmooth 2.23-20
- MASS 7.3-58.3
- Matrix.utils 0.9.8
- Matrix 1.5-4
- MatrixGenerics 1.10.0
- MatrixModels 0.5-1
- R.methodsS3 1.8.2
- R.oo 1.25.0
- R.utils 2.12.2
- R6 2.5.1
- RANN 2.6.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.12
- ROCR 1.0-11
- RSQLite 2.3.1
- Rcpp 1.0.10
- RcppAnnoy 0.0.20
- RcppArmadillo 0.12.2.0.0
- RcppEigen 0.3.3.9.3
- RcppHNSW 0.4.1
- RcppML 0.3.7
- RcppProgress 0.4.2
- RcppProgressArmadillo 0.2
- RcppProgressETA 0.1
- RcppProgressExample 0.2
- RcppTOML 0.2.2
- Rdpack 2.4
- RdpackTester 1.0
- ResidualMatrix 1.8.0
- Rhdf5lib 1.20.0
- RhpcBLASctl 0.23-42
- Rhtslib 2.0.0
- Rsamtools 2.14.0
- Rtsne 0.16
- S4Vectors 0.36.2
- ScaledMatrix 1.6.0
- Seurat 4.3.0
- SeuratObject 4.1.3
- SeuratWrappers 0.3.1
- SingleCellExperiment 1.20.1
- SparseM 1.81
- SummarizedExperiment 1.28.0
- TFisher 0.2.0
- TH.data 1.1-2
- V8 4.3.0
- XML 3.99-0.14
- XVector 0.38.0
- abind 1.4-5
- annotate 1.76.0
- askpass 1.1
- assertthat 0.2.1
- babelgene 22.9
- base64enc 0.1-3
- base 4.2.3
- basilisk.utils 1.10.0
- basilisk 1.10.2
- batchelor 1.14.1
- beachmat 2.14.2
- beachtest 1.0.0
- beeswarm 0.4.0
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.4
- bluster 1.8.0
- bookdown 0.33
- boot 1.3-28.1
- brew 1.0-8
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- bslib 0.4.2
- caTools 1.18.2
- cachem 1.0.7
- callr 3.7.3
- cellranger 1.1.0
- class 7.3-21
- classInt 0.4-9
- cli 3.6.1
- clipr 0.8.0
- cluster 2.1.4
- codetools 0.2-19
- colorspace 2.1-0
- commonmark 1.9.0
- compiler 4.2.3
- concaveman 1.1.0
- cowplot 1.1.1
- cpp11 0.4.3
- crayon 1.5.2
- credentials 1.3.2
- crosstalk 1.2.0
- curl 5.0.0
- data.table 1.14.8
- datasets 4.2.3
- deldir 1.0-6
- desc 1.4.2
- devtools 2.4.5
- diffobj 0.3.5
- digest 0.6.31
- dir.expiry 1.6.0
- docopt 0.7.1
- dotCall64 1.0-2
- downlit 0.4.2
- dplyr 1.1.1
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- e1071 1.7-13
- edgeR 3.40.2
- ellipsis 0.3.2
- entropy 1.3.1
- evaluate 0.20
- fansi 1.0.4
- farver 2.1.1
- fastmap 1.1.1
- fields 14.1
- filelock 1.0.2
- fitdistrplus 1.1-8
- fontawesome 0.5.1
- foreign 0.8-84
- formatR 1.14
- fs 1.6.1
- furrr 0.3.1
- futile.logger 1.4.3
- futile.options 1.0.1
- future.apply 1.10.0
- future 1.32.0
- generics 0.1.3
- gert 1.9.2
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- ggforce 0.4.1
- ggplot2 3.4.2
- ggrastr 1.0.1
- ggrepel 0.9.3
- ggridges 0.5.4
- gh 1.4.0
- gitcreds 0.1.2
- globals 0.16.2
- glue 1.6.2
- goftest 1.2-3
- gplots 3.1.3
- grDevices 4.2.3
- graph 1.76.0
- graphics 4.2.3
- grid 4.2.3
- gridExtra 2.3
- grr 0.9.5
- gtable 0.3.3
- gtools 3.9.4
- here 1.0.1
- hexbin 1.28.3
- highr 0.10
- hms 1.1.3
- htmltools 0.5.5
- htmlwidgets 1.6.2
- httpuv 1.6.9
- httr2 0.2.2
- httr 1.4.5
- ica 1.0-3
- igraph 1.4.2
- ini 0.3.1
- irlba 2.3.5.1
- isoband 0.2.7
- jquerylib 0.1.4
- jsonlite 1.8.4
- knitr 1.42
- labeling 0.4.2
- lambda.r 1.2.4
- later 1.3.0
- lattice 0.21-8
- lazyeval 0.2.2
- leiden 0.4.3
- leidenbase 0.1.18
- lifecycle 1.0.3
- limma 3.54.2
- listenv 0.9.0
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- lme4 1.1-32
- lmtest 0.9-40
- locfit 1.5-9.7
- magrittr 2.0.3
- maps 3.4.1
- mathjaxr 1.6-0
- matrixStats 0.63.0
- memoise 2.0.1
- metap 1.8
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- methods 4.2.3
- mgcv 1.8-42
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- minqa 1.2.5
- misc3d 0.9-1
- mnormt 2.1.1
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- morebeach 1.0.0
- morebeachtests 1.0.0
- msigdbr 7.5.1
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- multtest 2.54.0
- munsell 0.5.0
- mutoss 0.1-13
- mvtnorm 1.1-3
- mvtnormAPI 1.0-0
- nlme 3.1-162
- nloptr 2.0.3
- nnTensor 1.1.13
- nnet 7.3-18
- numDeriv 2016.8-1.1
- openssl 2.0.6
- org.testing.db 0.1
- parallel 4.2.3
- parallelly 1.35.0
- patchwork 1.1.2
- pbapply 1.7-0
- pbmcapply 1.5.1
- pcaMethods 1.90.0
- pheatmap 1.0.12
- pillar 1.9.0
- pkgbuild 1.4.0
- pkgconfig 2.0.3
- pkgdown 2.0.7
- pkgload 1.3.2
- plogr 0.2.0
- plot3D 1.4
- plotly 4.10.1
- plotrix 3.8-2
- plyr 1.8.8
- png 0.1-8
- polyclip 1.10-4
- praise 1.0.0
- prettyunits 1.1.1
- processx 3.8.1
- profvis 0.3.7
- progress 1.2.2
- progressr 0.13.0
- promises 1.2.0.1
- proxy 0.4-27
- ps 1.7.5
- pscl 1.5.5
- purrr 1.0.1
- qqconf 1.3.2
- quantreg 5.95
- qvalue 2.30.0
- rTensor 1.4.8
- ragg 1.2.5
- rappdirs 0.3.3
- rbibutils 2.2.13
- rcmdcheck 1.4.0
- readxl 1.4.2
- rematch2 2.1.2
- rematch 1.0.1
- remotes 2.4.2
- reshape2 1.4.4
- restfulr 0.0.15
- reticulate 1.28
- rhdf5 2.42.1
- rhdf5filters 1.10.1
- rjson 0.2.21
- rlang 1.1.0
- rmarkdown 2.21
- robustbase 0.95-1
- roxygen2 7.2.3
- rpart 4.1.19
- rprojroot 2.0.3
- rsample 1.1.1
- rstudioapi 0.14
- rsvd 1.0.5
- rtracklayer 1.58.0
- rversions 2.1.2
- s2 1.1.2
- sandwich 3.0-2
- sass 0.4.5
- scDblFinder 1.12.0
- scTGIF 1.11.2
- scales 1.2.1
- scater 1.26.1
- scattermore 0.8
- schex 1.12.0
- scran 1.26.2
- sctransform 0.3.5
- scuttle 1.8.4
- sessioninfo 1.2.2
- sf 1.0-12
- shiny 1.7.4
- sitmo 2.0.2
- slam 0.1-50
- slider 0.3.0
- sn 2.1.1
- snow 0.4-4
- son.of.basilisk 0.99.0
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- sp 1.6-0
- spData 2.2.2
- spam 2.9-1
- sparseMatrixStats 1.10.0
- spatial 7.3-16
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- splines 4.2.3
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- stats4 4.2.3
- stats 4.2.3
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- tensor 1.5
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- tibble 3.2.1
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- zoo 1.8-12
- ubuntu/adduser 3.118ubuntu5
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- ubuntu/bash-completion 1:2.11-5ubuntu1
- ubuntu/bash 5.1-6ubuntu1
- ubuntu/biber 2.17-2
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- ubuntu/python3-setuptools 59.6.0-1.2ubuntu0.22.04.1
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- ubuntu/python3 3.10.6-1~22.04
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- ubuntu/rstudio-server 2023.03.0 386
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- ubuntu/tex-common 6.17
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- ubuntu/tzdata 2022g-0ubuntu0.22.04.1
- ubuntu/ubuntu-keyring 2021.03.26
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- ubuntu/ucf 3.0043
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- ubuntu/usrmerge 25ubuntu2
- ubuntu/util-linux 2.37.2-4ubuntu3
- ubuntu/uuid-dev 2.37.2-4ubuntu3
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- ubuntu/x11-common 1:7.7 23ubuntu2
- ubuntu/x11proto-dev 2021.5-1
- ubuntu/xfonts-100dpi 1:1.0.4 nmu1.1
- ubuntu/xfonts-75dpi 1:1.0.4 nmu1.1
- ubuntu/xfonts-encodings 1:1.0.5-0ubuntu2
- ubuntu/xfonts-utils 1:7.7 6build2
- ubuntu/xorg-sgml-doctools 1:1.11-1.1
- ubuntu/xtrans-dev 1.4.0-1
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- ubuntu/zip 3.0-12build2
- ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu9.2
- ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu9.2
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- bootstrap 5.2.2
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- joblib 1.2.0
- numpy 1.24.3
- pandas 2.0.0
- pip 22.0.2
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- pytz 2023.3
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- setuptools 44.1.1
- setuptools 59.6.0
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- threadpoolctl 3.1.0
- tzdata 2023.3
- wheel 0.37.1
- wsgiref 0.1.2