Ecosyste.ms: Docker

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koji11235/rnaseq_env : latest

Latest release: almost 2 years ago - 29 downloads - 981 dependencies

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.48.0
AnnotationFilter 1.10.0
BH 1.81.0-1
Biobase 2.46.0
BiocFileCache 1.10.2
BiocGenerics 0.32.0
BiocManager 1.30.19
BiocParallel 1.20.1
BiocVersion 3.10.1
Biostrings 2.54.0
DBI 1.1.3
DESeq2 1.26.0
DO.db 2.9
DOSE 3.12.0
DT 0.27
DelayedArray 0.12.3
FNN 1.1.3.1
Formula 1.2-4
GEOquery 2.54.1
GO.db 3.10.0
GOSemSim 2.12.1
GenomeInfoDb 1.22.1
GenomeInfoDbData 1.2.2
GenomicAlignments 1.22.1
GenomicFeatures 1.38.2
GenomicRanges 1.38.0
Glimma 1.14.0
Hmisc 4.7-2
IRanges 2.20.2
KEGGREST 1.26.1
KEGGgraph 1.46.0
KernSmooth 2.23-20
Lahman 10.0-1
MASS 7.3-58.2
Matrix 1.5-3
MatrixModels 0.5-1
PKI 0.1-12
ProtGenerics 1.18.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.5.1
RANN 2.6.1
RColorBrewer 1.1-3
RCurl 1.98-1.9
RMySQL 0.10.25
ROCR 1.0-11
RPostgreSQL 0.7-4
RSQLite 2.2.20
RSpectra 0.16-1
Rcpp 1.0.10
RcppAnnoy 0.0.20
RcppArmadillo 0.11.4.3.1
RcppEigen 0.3.3.5.0
RcppParallel 5.1.6
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
Rdpack 2.4
RdpackTester 1.0
ReactomePA 1.30.0
Rgraphviz 2.30.0
Rhtslib 1.18.1
Rsamtools 2.2.3
Rsubread 2.0.1
Rtsne 0.16
S4Vectors 0.24.4
SDMTools 1.1-221.1
Seurat 3.1.1
SparseM 1.81
SummarizedExperiment 1.16.1
TFisher 0.2.0
TH.data 1.1-1
XML 3.99-0.3
XVector 0.26.0
annotate 1.64.0
ape 5.6-2
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 3.6.1
bibtex 0.5.0
biomaRt 2.42.1
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
bookdown 0.32
boot 1.3-28.1
brew 1.0-8
brio 1.1.3
broom 1.0.2
bslib 0.4.2
caTools 1.18.2
cachem 1.0.6
callr 3.7.3
cellranger 1.1.0
checkmate 2.1.0
class 7.3-21
cli 3.6.0
clipr 0.8.0
clisymbols 1.2.0
cluster 2.1.4
codetools 0.2-18
colorspace 2.1-0
commonmark 1.8.1
compiler 3.6.1
covr 3.6.1
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
curl 5.0.0
cyclocomp 1.1.0
data.table 1.14.6
datasets 3.6.1
dbplyr 2.3.0
deldir 1.0-6
desc 1.4.2
diffobj 0.3.5
digest 0.6.31
docopt 0.7.1
downlit 0.4.2
dplyr 1.0.10
dqrng 0.3.0
dtplyr 1.2.2
edgeR 3.28.1
ellipsis 0.3.2
enrichplot 1.6.1
ensembldb 2.10.2
europepmc 0.4.1
evaluate 0.20
fansi 1.0.4
farver 2.1.1
fastmap 1.1.0
fastmatch 1.1-3
feather 0.3.5
fgsea 1.12.0
fitdistrplus 1.1-8
foghorn 1.5.1
fontawesome 0.4.0
forcats 0.5.2
foreign 0.8-71
formatR 1.14
fs 1.6.0
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.10.0
future 1.30.0
gargle 1.2.1
gbRd 0.4-11
gdata 2.18.0.1
genefilter 1.68.0
geneplotter 1.64.0
generics 0.1.3
gert 1.9.2
ggforce 0.4.1
ggplot2 3.4.0
ggplotify 0.1.0
ggraph 2.1.0
ggrepel 0.9.2
ggridges 0.5.4
gh 1.3.1
git2r 0.30.1
gitcreds 0.1.2
globals 0.16.2
glue 1.6.2
gmailr 1.0.1
googledrive 2.0.0
googlesheets4 1.0.1
gplots 3.1.3
grDevices 3.6.1
graph 1.64.0
graphics 3.6.1
graphite 1.32.0
graphlayouts 0.8.4
grid 3.6.1
gridExtra 2.3
gridGraphics 0.5-1
gtable 0.3.1
gtools 3.9.4
haven 2.5.1
here 1.0.1
hexbin 1.28.2
highlight 0.5.1
highr 0.10
hms 1.1.2
htmlTable 2.4.1
htmltools 0.5.4
htmlwidgets 1.6.1
httpuv 1.6.8
httr2 0.2.2
httr 1.4.4
hunspell 3.0.2
ica 1.0-3
ids 1.0.1
igraph 1.3.5
ini 0.3.1
interp 1.1-3
irlba 2.3.3
isoband 0.2.7
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.41
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
latticeExtra 0.6-30
lazyeval 0.2.2
lifecycle 1.0.3
limma 3.42.2
lintr 3.0.2
listenv 0.9.0
littler 0.3.17
lmtest 0.9-40
locfit 1.5-9.1
lsei 1.3-0
lubridate 1.9.0
magrittr 2.0.3
markdown 1.4
mathjaxr 1.6-0
matrixStats 0.63.0
memoise 2.0.1
methods 3.6.1
mgcv 1.8-41
microbenchmark 1.4.9
mime 0.12
miniUI 0.1.1.1
mnormt 2.1.1
mockery 0.4.3
modelr 0.1.10
multcomp 1.4-20
multtest 2.42.0
munsell 0.5.0
mutoss 0.1-12
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-161
nnet 7.3-18
npsurv 0.5-0
numDeriv 2016.8-1.1
nycflights13 1.0.2
openssl 2.0.5
org.Hs.eg.db 3.10.0
org.Mm.eg.db 3.10.0
org.testing.db 0.1
packrat 0.9.0
parallel 3.6.1
parallelly 1.34.0
parsedate 1.3.1
pathview 1.26.0
pbapply 1.7-0
pillar 1.8.1
pingr 2.0.2
pkgbuild 1.4.0
pkgconfig 2.0.3
pkgload 1.3.2
plogr 0.2.0
plotly 4.10.1
plotrix 3.8-2
plyr 1.8.8
png 0.1-8
polyclip 1.10-4
praise 1.0.0
prettyunits 1.1.1
processx 3.8.0
profvis 0.3.7
progress 1.2.2
promises 1.2.0.1
ps 1.7.2
purrr 1.0.1
quantreg 5.94
qvalue 2.18.0
rJava 1.0-6
rappdirs 0.3.3
rbibutils 2.2.13
rcmdcheck 1.4.0
reactome.db 1.70.0
readr 2.1.3
readxl 1.4.1
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
reprex 2.0.2
reshape2 1.4.4
rex 1.2.1
rhub 1.1.2
rlang 1.0.6
rmarkdown 2.20
rmdshower 2.1.1
roxygen2 7.2.3
rpart 4.1.19
rprojroot 2.0.3
rsconnect 0.8.29
rstudioapi 0.14
rsvd 1.0.2
rticles 0.24
rtracklayer 1.46.0
rvcheck 0.2.1
rversions 2.1.2
rvest 1.0.3
sandwich 3.0-2
sass 0.4.5
scales 1.2.1
sctransform 0.3.5
selectr 0.4-2
servr 0.25
sessioninfo 1.2.2
shiny 1.7.4
sitmo 2.0.2
sn 2.1.0
snow 0.4-4
sourcetools 0.1.7
spatial 7.3-16
spelling 2.2
splines 3.6.1
spp 1.0
stats4 3.6.1
stats 3.6.1
stringdist 0.9.10
stringi 1.7.12
stringr 1.5.0
survival 3.5-0
sys 3.4.1
systemfonts 1.0.4
tcltk 3.6.1
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testit 0.13
testthat 3.1.6
tibble 3.1.8
tidygraph 1.2.2
tidyr 1.2.1
tidyselect 1.2.0
tidyverse 1.3.2
timechange 0.2.0
tinytex 0.43
tools 3.6.1
translations 3.6.1
triebeard 0.3.0
tsne 0.1-3.1
tufte 0.12
tweenr 2.0.2
tximeta 1.4.5
tximport 1.14.2
tzdb 0.3.0
urlchecker 1.0.1
urltools 1.7.3
usethis 2.1.6
utf8 1.2.2
utils 3.6.1
uuid 1.1-0
uwot 0.1.14
vctrs 0.5.2
viridis 0.6.2
viridisLite 0.4.1
vroom 1.6.1
waldo 0.4.0
webshot 0.5.4
whisker 0.4.1
whoami 1.3.0
withr 2.5.0
xfun 0.36
xml2 1.3.3
xmlparsedata 1.0.5
xopen 1.0.0
xtable 1.8-4
yaml 2.3.7
yulab.utils 0.0.6
zeallot 0.1.0
zip 2.2.2
zlibbioc 1.32.0
zoo 1.8-11