Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : maven : jbzip2:jbzip2

Explore the latest package usage data for jbzip2:jbzip2 in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 195
Total downloads: 2,066,606

More details on packages.ecosyste.ms - JSON

broadinstitute/gtex_rnaseq V10pg

GTEx RNA-seq pipeline: alignment (STAR), QC (RNA-SeQC), expression quantification (RSEM & RNA-SeQC)

  • version: 0.9
Latest release: about 1 year ago - 276,836 downloads - 914 dependencies
broadinstitute/viral-core 2.0.21

  • version: 0.9
Latest release: over 4 years ago - 154,409 downloads - 419 dependencies
nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 0.9
Latest release: over 3 years ago - 95,030 downloads - 297 dependencies
nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

  • version: 0.9
Latest release: over 2 years ago - 54,822 downloads - 352 dependencies
nfcore/mag 1.2.0

  • version: 0.9
Latest release: almost 4 years ago - 38,626 downloads - 269 dependencies
nfcore/eager 2.5.2

A Docker image for the nf-core/eager pipeline.

  • version: 0.9
Latest release: 7 months ago - 46,224 downloads - 738 dependencies
nfcore/smrnaseq 1.1.0

A Docker container for the nf-core/smrnaseq pipeline.

  • version: 0.9
Latest release: over 3 years ago - 50,059 downloads - 320 dependencies
broadinstitute/viral-ngs 1.25.0

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 0.9
Latest release: over 5 years ago - 25,404 downloads - 417 dependencies
biocontainers/trimmomatic v0.38dfsg-1-deb_cv1

  • version: 0.9.1
Latest release: over 5 years ago - 22,101 downloads - 206 dependencies
nfcore/ampliseq 1.2.0

A Docker image for nf-core/ampliseq.

  • version: 0.9
Latest release: almost 4 years ago - 10,515 downloads - 331 dependencies
biocontainers/trinityrnaseq v2.6.6dfsg-6-deb_cv1

  • version: 0.9.1
Latest release: over 5 years ago - 8,008 downloads - 831 dependencies
broadinstitute/viral-assemble latest

  • version: 0.9
Latest release: over 4 years ago - 4,486 downloads - 431 dependencies
broadinstitute/viral-phylo 2.0.21.5

  • version: 0.9
Latest release: over 4 years ago - 4,454 downloads - 431 dependencies
dhspence/docker-trimgalore latest

trimgalore, cutadapt, on top of docker-genomic-analysis

  • version: 0.9
Latest release: about 6 years ago - 3,656 downloads - 733 dependencies
bactopia/qc_reads 1.7.1

  • version: 0.9
Latest release: over 3 years ago - 3,513 downloads - 182 dependencies
sanogenetics/fastqc 0.11.9

  • version: 0.9
Latest release: over 2 years ago - 20,097 downloads - 233 dependencies
nfcore/bcellmagic 1.2.0

A preliminary container for the bcellmagic pipeline

  • version: 0.9
Latest release: about 5 years ago - 2,656 downloads - 298 dependencies
genomicmedicinesweden/gms-artic-nanopore 0c599b9

  • version: 0.9
Latest release: over 1 year ago - 3,175 downloads - 153 dependencies
nfcore/smartseq2 dev

A docker container for the nf-core/smartseq2 pipeline.

  • version: 0.9
Latest release: almost 4 years ago - 1,753 downloads - 257 dependencies
nfcore/nascent dev

Nascent Transcription Processing Pipeline

  • version: 0.9
Latest release: almost 5 years ago - 1,389 downloads - 214 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: 0.9
Latest release: over 2 years ago - 1,069,006 downloads - 607 dependencies
nfcore/slamseq 1.0.0

A docker image for nf-core/slamseq

  • version: 0.9
Latest release: over 4 years ago - 34,728 downloads - 354 dependencies
nfcore/kmermaid dev

A Docker container for the nf-core/kmermaid pipelin

  • version: 0.9
Latest release: almost 4 years ago - 21,818 downloads - 186 dependencies
intelliseqngs/fastqc 1.2.1

  • version: 0.9
Latest release: almost 4 years ago - 19,846 downloads - 243 dependencies
nfcore/nanoseq 1.1.0

Nanopore demultiplexing, QC and alignment pipeline

  • version: 0.9
Latest release: about 4 years ago - 9,714 downloads - 340 dependencies
nfcore/clipseq 1.0.0

  • version: 0.9
Latest release: almost 4 years ago - 5,757 downloads - 199 dependencies
nfcore/bacass 1.1.1

A Docker container for the nf-core/bacass pipeline.

  • version: 0.9
Latest release: about 4 years ago - 3,412 downloads - 204 dependencies
nfcore/coproid 1.1.1

A Docker image for the nf-core/coproid pipeline.

  • version: 0.9
Latest release: about 2 years ago - 1,953 downloads - 194 dependencies
nfcore/mnaseseq 1.0.0

A Docker container for the nf-core/mnaseseq pipeline.

  • version: 0.9
Latest release: over 2 years ago - 1,234 downloads - 212 dependencies
ocdr/ds-apps 1.0.43

  • version: 0.9.1
Latest release: about 1 year ago - 3,932 downloads - 3,778 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 0.9
Latest release: about 6 years ago - 1,189 downloads - 616 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: 0.9
Latest release: about 6 years ago - 1,196 downloads - 413 dependencies
nfcore/denovohybrid dev

A Docker Image for the nf-core/denovohybrid pipeline

  • version: 0.9
Latest release: over 5 years ago - 976 downloads - 374 dependencies
bactopia/gather_samples 2.2.0

  • version: 0.9
Latest release: about 2 years ago - 792 downloads - 217 dependencies
evolbioinfo/fastqc v0.11.9

A quality control tool for high throughput sequence data.

  • version: 0.9
Latest release: almost 4 years ago - 558 downloads - 285 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 0.9
Latest release: almost 2 years ago - 403 downloads - 849 dependencies
nfcore/vipr latest

A docker container for VIPR

  • version: 0.9
Latest release: over 6 years ago - 587 downloads - 223 dependencies
nfcore/bactmap dev

A Docker container for the bactmap pipeline.

  • version: 0.9
Latest release: over 5 years ago - 821 downloads - 223 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 0.9.1
Latest release: about 3 years ago - 307 downloads - 1,375 dependencies
cimendes/splicing-pipelines-nf 3.1.ubuntu

  • version: 0.9
Latest release: about 2 years ago - 276 downloads - 227 dependencies
nfcore/cutandrun dev

  • version: 0.9
Latest release: over 3 years ago - 486 downloads - 183 dependencies
chgyi/bio 3.5.1

  • version: 0.9
Latest release: over 6 years ago - 165 downloads - 1,077 dependencies
ctomlins/testuniv_update latest

  • version: 0.9
Latest release: about 4 years ago - 158 downloads - 758 dependencies
evolbioinfo/trimgalore v0.6.7

https://github.com/FelixKrueger/TrimGalore/

  • version: 0.9
Latest release: over 2 years ago - 255 downloads - 330 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 0.9
Latest release: almost 2 years ago - 131 downloads - 1,081 dependencies
chgyi/metaware_rna_denovo latest

  • version: 0.9
Latest release: almost 6 years ago - 171 downloads - 2,095 dependencies
nfcore/guideseq dev

A Docker container for the nf-core/guideseq pipeline.

  • version: 0.9
Latest release: over 5 years ago - 421 downloads - 214 dependencies
trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

  • version: 0.9.1, 0.9
Latest release: over 3 years ago - 160 downloads - 805 dependencies
biocontainers/eosc-pilot v1.0-remastering_cv1.0

  • version: 0.9
Latest release: over 6 years ago - 118 downloads - 309 dependencies
alexwaldrop/reads2variants v0.0

  • version: 0.9
Latest release: about 2 years ago - 110 downloads - 660 dependencies
felixschlesinger/scalerna bcparser_bam_out

  • version: 0.9
Latest release: about 1 year ago - 51,658 downloads - 241 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 0.9
Latest release: about 2 years ago - 80 downloads - 494 dependencies
ctomlins/trim_galore latest

  • version: 0.9
Latest release: about 3 years ago - 77 downloads - 357 dependencies
ctomlins/testuniv latest

  • version: 0.9
Latest release: about 3 years ago - 69 downloads - 536 dependencies
ctomlins/fastqc latest

  • version: 0.9
Latest release: over 3 years ago - 510 downloads - 359 dependencies
jlund256/xeno_rna-seq latest

  • version: 0.9
Latest release: about 2 years ago - 2,282 downloads - 902 dependencies
luisas/rnaseq 0.3

  • version: 0.9.1, 0.9
Latest release: about 5 years ago - 56 downloads - 571 dependencies
doejgi/trinityrnaseq-wdl 2.15.1

  • version: 0.9
Latest release: almost 2 years ago - 653 downloads - 980 dependencies
mlepetit/cellranger 1.1

  • version: 0.9
Latest release: about 2 years ago - 44 downloads - 287 dependencies
hoonbiolab/pepatac v1.1

  • version: 0.9.1, 0.9
Latest release: over 3 years ago - 43 downloads - 1,213 dependencies
iracooke/moqc 0.42

  • version: 0.9
Latest release: about 2 years ago - 52 downloads - 529 dependencies
nbutter/star latest

RNASeq_FASTQ-Counts

  • version: 0.9
Latest release: over 4 years ago - 35 downloads - 434 dependencies
hoonbiolab/fastqc v1.1

  • version: 0.9
Latest release: over 3 years ago - 39 downloads - 799 dependencies
ctomlins/tellread_2022 latest

  • version: 0.9
Latest release: about 2 years ago - 34 downloads - 711 dependencies
intelliseqngs/bco-app-a-thon latest

  • version: 0.9
Latest release: over 5 years ago - 104 downloads - 6,179 dependencies
sheffieldbioinformatics/unix-training latest

  • version: 0.9
Latest release: about 2 years ago - 337 downloads - 1,221 dependencies
ctomlins/bcl2fastq latest

  • version: 0.9
Latest release: over 3 years ago - 28 downloads - 474 dependencies
jpsmith5/peppro latest

  • version: 0.9.1, 0.9
Latest release: about 2 years ago - 29 downloads - 1,163 dependencies
bryoinformatics/rna-seq v1.0.0

A container for the RNAseq pipeline (https://github.com/bryoinformatics/RNAseq).

  • version: 0.9
Latest release: almost 2 years ago - 145 downloads - 188 dependencies
intelliseqngs/prodia_fastqc 1.0.0

  • version: 0.9
Latest release: about 2 years ago - 35 downloads - 266 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 0.9.1
Latest release: about 3 years ago - 28 downloads - 2,335 dependencies
tercen/trimgalore_docker_operator latest

  • version: 0.9
Latest release: almost 3 years ago - 26 downloads - 1,458 dependencies
prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

  • version: 0.9.1
Latest release: about 2 years ago - 26 downloads - 1,382 dependencies
1995aileen/banana 1.0

  • version: 0.9
Latest release: about 2 years ago - 22 downloads - 116 dependencies
crukmi/target-snakemake-docker latest

  • version: 0.9
Latest release: over 2 years ago - 21 downloads - 1,148 dependencies
chgyi/metawrap latest

  • version: 0.9
Latest release: about 6 years ago - 22 downloads - 199 dependencies
bokebiotech/qcpipe v6

  • version: 0.9
Latest release: over 1 year ago - 339 downloads - 1,186 dependencies
alexwaldrop/fastqc v0.11.9

  • version: 0.9
Latest release: about 2 years ago - 22 downloads - 192 dependencies
koki/urchin_workflow_bioconda 20220527

  • version: 0.9
Latest release: over 2 years ago - 26 downloads - 1,195 dependencies
todachuy2406/fastqc v2511

  • version: 0.9
Latest release: about 2 years ago - 22 downloads - 271 dependencies
ctomlins/nanopore-rna-pipeline latest

  • version: 0.9.1
Latest release: about 3 years ago - 21 downloads - 717 dependencies