ocdr/ds-apps 1.0.43

ctomlins/tellread_2022 latest

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

qdidiscoveryservices/bspipe 0.1.0

biodancer/nasap_performance latest

write later

nbutter/star latest

RNASeq_FASTQ-Counts

genomicmedicinesweden/gms-artic-nanopore 0c599b9

dolphinnext/ont_variant_calling 1.0

ctomlins/trim_galore latest

nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

glevdoug/fastqc_0.11.5 v1.1

Updated Docker schema for older fastqc

sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

evolomicsmbbt/rna_seq latest

ctomlins/testuniv latest

qdidiscoveryservices/gatk-v2461_bwa_aws latest

sheffieldbioinformatics/unix-training latest

ctomlins/bcl2fastq latest

jpsmith5/peppro 0.10.2

bryoinformatics/rna-seq v1.0.0

A container for the RNAseq pipeline (https://github.com/bryoinformatics/RNAseq).

qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

intelliseqngs/prodia_fastqc 1.0.0

sagnikbanerjee15/ngpint 1.0.0

chgyi/bio 3.5.1

ctomlins/testuniv_update latest

salvacasani/fastqc latest

fischbachlab/nf-miti-projects latest

chgyi/metaware_rna_denovo latest

cjchen/tbtoolszone 2.0

jyesselm/rna-map latest

almadengenomics/trimgalore 0.6.5

awanydenis/trim-galore 0.6.7

trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

nolandocker/chipseq latest

Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.

andrewatmp/qiime_unzip latest

gfanz/trimmomatic latest

Trimmomatic is a sequence read trimming tool for Illumina technology.

cricker3/emseq_align v1.0

bokebiotech/qcpipe v6

qdidiscoveryservices/gatk-v2461_bwa_vardict latest

yuyanying/conda_preprocess latest

bryoinformatics/variant-id v1.0.0

A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).

mqmnd/trimmomatic amd-0.39

Trimmomatic installed on an ubuntu 20.04 base image. Trimmomatic repo also present in root dir

djbradshaw2/trimgalore latest

jpcartailler/taha 0.8

brianyee/rnaseq snakemake_1.0.0

lucifer001/javasarala-dev-ab123 latest

dabbleofdevops/nextneopi 20230817

ctomlins/tseq_2 latest

ctomlins/tseq latest

hremon331046/neoantigen-vaccine-pipeline nf-pipeline

jcbn/dest_v2.5 latest

Updated version of the DEST pipeline

aminhaghparast/genomics21 2.12

chriswyatt/test_nextflow latest

lucifer001/javasarala-be-test latest

chriswyatt/test_mamba latest

robertbio/wf latest

jorgeamaya/ci_barcode_terra_dada2_iseq v1

gene110/vep_filter v07

lucifer001/sachakala-be-qwertyuiop latest

nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

bioinformaticsmusc/biocm-cli 1.0.13

prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

umasstr/mageckvispr latest

tercen/trimgalore_docker_operator 0.1.0

lucifer001/sachakala-be-test-109-101 latest

lucifer001/sachakala-ui-test3333 latest

andrewsg/atac latest

lucifer001/javasarala-be-test1101 latest

lesbiangreat/bioinfor_dev v0.64

yunagaoka/ubuntu22.04 0.1.2

lucifer001/asarda-qa-test1234 02-22-23-12-16-56

crukmi/target-snakemake-docker 3.2.2

sbouslama/sb-mpxv-nf alpha3

jieliu4wustl/wustl hisat3n

chaunceyzhou/awesome_rnaseq v2.0

bioxfu/ddngs latest

wyangwu/r4.1.2 latest

alexwaldrop/fastqc v0.11.9

albicans2021/fastqc 1.0

Base image is Alpine linux which installed only java8, perl, unzip, and fastqc_v0.11.9

amirshams/spipe 1.0.7

omicsclass/pan-genome v1.0

1995aileen/banana 1.0

koki/urchin_workflow_bioconda 20250823

chgyi/metawrap latest

koji11235/rnaseq_env latest

todachuy2406/fastqc v2511

lucifer001/sachakala-be-filebrowsertest latest

qtulab/miniencode latest