Ecosyste.ms: Docker
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Package Usage : maven : sam:sam
Explore the latest package usage data for sam:sam in the maven ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 136
Total downloads: 1,963,635
More details on packages.ecosyste.ms - JSON
broadinstitute/gtex_rnaseq V10pg
GTEx RNA-seq pipeline: alignment (STAR), QC (RNA-SeQC), expression quantification (RSEM & RNA-SeQC)
- version: 1.103
broadinstitute/viral-core latest
- version: 1.103
nfcore/methylseq dev
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.
- version: 1.103
nfcore/atacseq latest
A Docker container for the nf-core/atacseq pipeline.
- version: 1.103
nfcore/mag dev
- version: 1.103
nfcore/eager 2.5.0
A Docker image for the nf-core/eager pipeline.
- version: 1.103
nfcore/smrnaseq dev
A Docker container for the nf-core/smrnaseq pipeline.
- version: 1.103
broadinstitute/viral-ngs latest
See: https://viral-ngs.readthedocs.io/en/latest/
- version: 1.103
nfcore/ampliseq dev
A Docker image for nf-core/ampliseq.
- version: 1.103
broadinstitute/viral-assemble latest
- version: 1.103
broadinstitute/viral-phylo 2.0.21.5
- version: 1.103
dhspence/docker-trimgalore latest
trimgalore, cutadapt, on top of docker-genomic-analysis
- version: 1.103
bactopia/qc_reads 1.7.1
- version: 1.103
sanogenetics/fastqc 0.11.9
- version: 1.103
nfcore/bcellmagic dev
A preliminary container for the bcellmagic pipeline
- version: 1.103
genomicmedicinesweden/gms-artic-nanopore 0c599b9
- version: 1.103
nfcore/smartseq2 dev
A docker container for the nf-core/smartseq2 pipeline.
- version: 1.103
nfcore/nascent dev
Nascent Transcription Processing Pipeline
- version: 1.103
nfcore/sarek 2.7.2
A Docker container for the nf-core/sarek pipeline
- version: 1.103
nfcore/slamseq dev
A docker image for nf-core/slamseq
- version: 1.103
nfcore/kmermaid dev
A Docker container for the nf-core/kmermaid pipelin
- version: 1.103
intelliseqngs/fastqc 1.2.1
- version: 1.103
nfcore/nanoseq dev
Nanopore demultiplexing, QC and alignment pipeline
- version: 1.103
nfcore/clipseq dev
- version: 1.103
nfcore/bacass dev
A Docker container for the nf-core/bacass pipeline.
- version: 1.103
nfcore/coproid 1.1.1
A Docker image for the nf-core/coproid pipeline.
- version: 1.103
nfcore/mnaseseq latest
A Docker container for the nf-core/mnaseseq pipeline.
- version: 1.103
nfcore/exoseq dev
A docker container for the ExoSeq pipeline
- version: 1.103
nfcore/lncpipe dev
A Docker image for nf-core/lncpipe
- version: 1.103
nfcore/denovohybrid dev
A Docker Image for the nf-core/denovohybrid pipeline
- version: 1.103
bactopia/gather_samples 2.2.0
- version: 1.103
evolbioinfo/fastqc v0.11.9
A quality control tool for high throughput sequence data.
- version: 1.103
qdidiscoveryservices/gatk-v2461_bwa_aws latest
- version: 1.103
nfcore/vipr latest
A docker container for VIPR
- version: 1.103
nfcore/bactmap dev
A Docker container for the bactmap pipeline.
- version: 1.103
cimendes/splicing-pipelines-nf 3.1.ubuntu
- version: 1.103
nfcore/cutandrun dev
- version: 1.103
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor
pcawg_broad_wgs_variant_callers
- version: *
chgyi/bio 3.5.1
- version: 1.103
ctomlins/testuniv_update latest
- version: 1.103
broadinstitute/pcawg_full 7
- version: *
evolbioinfo/trimgalore v0.6.7
https://github.com/FelixKrueger/TrimGalore/
- version: 1.103
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest
- version: 1.103
chgyi/metaware_rna_denovo latest
- version: 1.103
nfcore/guideseq dev
A Docker container for the nf-core/guideseq pipeline.
- version: 1.103
trust1/ubuntu OMGv001
Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline
- version: 1.103
biocontainers/eosc-pilot v1.0-remastering_cv1.0
- version: 1.103
broadinstitute/pcawg_tokens latest
- version: *
alexwaldrop/reads2variants v0.0
- version: 1.103
felixschlesinger/scalerna test_bam_write
- version: 1.103
dolphinnext/ont_variant_calling 1.0
- version: 1.103
ctomlins/trim_galore latest
- version: 1.103
ctomlins/testuniv latest
- version: 1.103
jlund256/xeno_rna-seq latest
- version: 1.103
luisas/rnaseq 0.3
- version: 1.103, 1.113
doejgi/trinityrnaseq-wdl 2.11.0b
- version: 1.103
mlepetit/cellranger 1.1
- version: 1.103
hoonbiolab/pepatac v1.1
- version: 1.103
iracooke/moqc 0.42
- version: 1.103
nbutter/star latest
RNASeq_FASTQ-Counts
- version: 1.103
hoonbiolab/fastqc v1.1
- version: 1.103
dolphinnext/beenet 1.0
- version: 1.71
ctomlins/tellread_2022 latest
- version: 1.103
intelliseqngs/bco-app-a-thon latest
- version: 1.103
sheffieldbioinformatics/unix-training latest
- version: 1.103
ctomlins/bcl2fastq latest
- version: 1.103
jpsmith5/peppro latest
- version: 1.103
intelliseqngs/prodia_fastqc 1.0.0
- version: 1.103
tercen/trimgalore_docker_operator latest
- version: 1.103
1995aileen/banana 1.0
- version: 1.103
crukmi/target-snakemake-docker latest
- version: 1.103
chgyi/metawrap latest
- version: 1.103
bokebiotech/qcpipe v6
- version: 1.103
alexwaldrop/fastqc v0.11.9
- version: 1.103
koki/urchin_workflow_bioconda 20220527
- version: 1.103
todachuy2406/fastqc v2511
- version: 1.103
chriswyatt/my-image latest
- version: 1.103
almadengenomics/trimgalore 0.6.5
- version: 1.103
biodancer/nasap_performance latest
write later
- version: 1.103
qdidiscoveryservices/gatk-v2461_bwa_vardict latest
- version: 1.103
delaugustin/fastqc v0.11.9
- version: 1.103
jpcartailler/taha 0.7
- version: 1.103
yiluxiangbei/pumpkin-genomealign-notebook 1.0
- version: 1.103
jcbn/dest_v2.5 latest
Updated version of the DEST pipeline
- version: 1.103
yiluxiangbei/pumpkin-gene-genomealign 20220216
- version: 1.103
chgyi/trinity 2.8.4
- version: 1.103
sebrauschert/amplicon_pipeline v0.3.2
A pipeline for amplicon sequencing analysis of marine fish
- version: 1.103