ctomlins/tellread_2022 latest

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

qdidiscoveryservices/bspipe 0.1.0

biodancer/nasap_performance latest

write later

nbutter/star latest

RNASeq_FASTQ-Counts

genomicmedicinesweden/gms-artic-nanopore 0c599b9

dolphinnext/ont_variant_calling 1.0

ctomlins/trim_galore latest

nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

glevdoug/fastqc_0.11.5 v1.1

Updated Docker schema for older fastqc

sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

ctomlins/testuniv latest

qdidiscoveryservices/gatk-v2461_bwa_aws latest

sheffieldbioinformatics/unix-training latest

ctomlins/bcl2fastq latest

jpsmith5/peppro 0.10.2

qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

intelliseqngs/prodia_fastqc 1.0.0

chgyi/bio 3.5.1

ctomlins/testuniv_update latest

broadinstitute/pcawg_full 7

salvacasani/fastqc latest

chgyi/metaware_rna_denovo latest

almadengenomics/trimgalore 0.6.5

awanydenis/trim-galore 0.6.7

trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

nolandocker/chipseq latest

Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.

andrewatmp/qiime_unzip latest

cricker3/emseq_align v1.0

bokebiotech/qcpipe v6

qdidiscoveryservices/gatk-v2461_bwa_vardict latest

djbradshaw2/trimgalore latest

jpcartailler/taha 0.8

ctomlins/tseq_2 latest

ctomlins/tseq latest

jcbn/dest_v2.5 latest

Updated version of the DEST pipeline

chriswyatt/test_nextflow latest

chriswyatt/test_mamba latest

jorgeamaya/ci_barcode_terra_dada2_iseq v1

nfcore/atacseq 1.2.2

A Docker container for the nf-core/atacseq pipeline.

umasstr/mageckvispr latest

tercen/trimgalore_docker_operator 0.1.0

hakanozadam/riboflow latest

andrewsg/atac latest

crukmi/target-snakemake-docker 3.2.2

sbouslama/sb-mpxv-nf alpha3

chaunceyzhou/awesome_rnaseq v2.0

alexwaldrop/fastqc v0.11.9

albicans2021/fastqc 1.0

Base image is Alpine linux which installed only java8, perl, unzip, and fastqc_v0.11.9

omicsclass/pan-genome v1.0

1995aileen/banana 1.0

koki/urchin_workflow_bioconda 20250823

chgyi/metawrap latest

koji11235/rnaseq_env latest

todachuy2406/fastqc v2511

pauffret/trimming-box 1.0

Docker image containing trimming tools requirements for SSDS DMC1 pipeline.

feserm/my-image latest

nrminor/lowov-wgs v1.5

nfcore/mag 1.2.0

nfcore/smrnaseq 1.1.0

A Docker container for the nf-core/smrnaseq pipeline.

nfcore/slamseq 1.0.0

A docker image for nf-core/slamseq

broadinstitute/viral-ngs 1.25.0

See: https://viral-ngs.readthedocs.io/en/latest/

nfcore/kmermaid dev

A Docker container for the nf-core/kmermaid pipelin

felixschlesinger/scalerna bcparser_bam_out

intelliseqngs/fastqc 1.2.1

timothystephens/genotype_samples 0.0.1

nfcore/ampliseq 1.2.0

A Docker image for nf-core/ampliseq.

hd88/trim latest

nfcore/nanoseq 1.1.0

Nanopore demultiplexing, QC and alignment pipeline

sanogenetics/fastqc 0.11.9

yiluxiangbei/pumpkin-genomealign-notebook 1.0

nfcore/clipseq 1.0.0

sangerbentleygroup/a1_bioinformatics_training 1.0.3

broadinstitute/viral-assemble latest

broadinstitute/viral-phylo 2.0.21.5

dhspence/docker-trimgalore latest

trimgalore, cutadapt, on top of docker-genomic-analysis

bactopia/qc_reads 1.7.1

nfcore/bacass 1.1.1

A Docker container for the nf-core/bacass pipeline.

nfcore/bcellmagic 1.2.0

A preliminary container for the bcellmagic pipeline

chgyi/trinity 2.8.4

nfcore/coproid 1.1.1

A Docker image for the nf-core/coproid pipeline.

nfcore/smartseq2 dev

A docker container for the nf-core/smartseq2 pipeline.

ashedpotatoes/clockwork-plus v0.12.5.3-CDC

CRyPTIC/IQBAL clockwork + reference genomes. More info: https://github.com/aofarrel/clockwork-wdl

chriswyatt/trans_denovo_nonmodel-nf firsttry

joshuatobin257/align latest

nfcore/nascent dev

Nascent Transcription Processing Pipeline

broadinstitute/gtex_rnaseq V11

GTEx RNA-seq pipeline: alignment (STAR), QC (RNA-SeQC), expression quantification (RSEM & RNA-SeQC)

nfcore/exoseq dev

A docker container for the ExoSeq pipeline

nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

nfcore/mnaseseq 1.0.0

A Docker container for the nf-core/mnaseseq pipeline.