Ecosyste.ms: Docker

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Package Usage : maven : cisd-jhdf5:cisd-jhdf5

Explore the latest package usage data for cisd-jhdf5:cisd-jhdf5 in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 159
Total downloads: 2,028,040

More details on packages.ecosyste.ms - JSON

broadinstitute/gtex_rnaseq V10pg

GTEx RNA-seq pipeline: alignment (STAR), QC (RNA-SeQC), expression quantification (RSEM & RNA-SeQC)

  • version: *
Latest release: 12 months ago - 276,171 downloads - 914 dependencies
broadinstitute/viral-core latest

  • version: *
Latest release: over 4 years ago - 151,955 downloads - 419 dependencies
nfcore/methylseq dev

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: *
Latest release: over 3 years ago - 92,677 downloads - 297 dependencies
nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

  • version: *
Latest release: over 2 years ago - 54,429 downloads - 352 dependencies
nfcore/mag dev

  • version: *
Latest release: over 3 years ago - 38,524 downloads - 269 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: *
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
nfcore/smrnaseq dev

A Docker container for the nf-core/smrnaseq pipeline.

  • version: *
Latest release: over 3 years ago - 38,754 downloads - 320 dependencies
broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: *
Latest release: over 4 years ago - 24,573 downloads - 417 dependencies
nfcore/ampliseq dev

A Docker image for nf-core/ampliseq.

  • version: *
Latest release: almost 4 years ago - 10,364 downloads - 331 dependencies
broadinstitute/viral-assemble latest

  • version: *
Latest release: over 4 years ago - 4,464 downloads - 431 dependencies
broadinstitute/viral-phylo 2.0.21.5

  • version: *
Latest release: over 4 years ago - 4,426 downloads - 431 dependencies
dhspence/docker-trimgalore latest

trimgalore, cutadapt, on top of docker-genomic-analysis

  • version: *
Latest release: almost 6 years ago - 3,649 downloads - 733 dependencies
bactopia/qc_reads 1.7.1

  • version: *
Latest release: over 3 years ago - 3,472 downloads - 182 dependencies
sanogenetics/fastqc 0.11.9

  • version: *
Latest release: over 2 years ago - 8,154 downloads - 233 dependencies
nfcore/bcellmagic dev

A preliminary container for the bcellmagic pipeline

  • version: *
Latest release: over 3 years ago - 2,594 downloads - 298 dependencies
genomicmedicinesweden/gms-artic-nanopore 0c599b9

  • version: *
Latest release: about 1 year ago - 2,025 downloads - 153 dependencies
nfcore/smartseq2 dev

A docker container for the nf-core/smartseq2 pipeline.

  • version: *
Latest release: over 3 years ago - 1,669 downloads - 257 dependencies
nfcore/nascent dev

Nascent Transcription Processing Pipeline

  • version: *
Latest release: over 4 years ago - 1,359 downloads - 214 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: *
Latest release: over 2 years ago - 1,052,189 downloads - 607 dependencies
nfcore/slamseq dev

A docker image for nf-core/slamseq

  • version: *
Latest release: over 3 years ago - 25,614 downloads - 354 dependencies
nfcore/kmermaid dev

A Docker container for the nf-core/kmermaid pipelin

  • version: *
Latest release: over 3 years ago - 21,797 downloads - 186 dependencies
intelliseqngs/fastqc 1.2.1

  • version: *
Latest release: over 3 years ago - 19,586 downloads - 243 dependencies
nfcore/nanoseq dev

Nanopore demultiplexing, QC and alignment pipeline

  • version: *
Latest release: almost 4 years ago - 9,677 downloads - 340 dependencies
nfcore/clipseq dev

  • version: *
Latest release: over 3 years ago - 5,470 downloads - 199 dependencies
nfcore/bacass dev

A Docker container for the nf-core/bacass pipeline.

  • version: *
Latest release: over 3 years ago - 3,388 downloads - 204 dependencies
nfcore/coproid 1.1.1

A Docker image for the nf-core/coproid pipeline.

  • version: *
Latest release: about 2 years ago - 1,859 downloads - 194 dependencies
nfcore/mnaseseq latest

A Docker container for the nf-core/mnaseseq pipeline.

  • version: *
Latest release: over 2 years ago - 1,092 downloads - 212 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: *
Latest release: almost 6 years ago - 1,158 downloads - 616 dependencies
nfcore/lncpipe dev

A Docker image for nf-core/lncpipe

  • version: *
Latest release: almost 6 years ago - 1,141 downloads - 413 dependencies
nfcore/denovohybrid dev

A Docker Image for the nf-core/denovohybrid pipeline

  • version: *
Latest release: about 5 years ago - 942 downloads - 374 dependencies
bactopia/gather_samples 2.2.0

  • version: *
Latest release: almost 2 years ago - 755 downloads - 217 dependencies
evolbioinfo/fastqc v0.11.9

A quality control tool for high throughput sequence data.

  • version: *
Latest release: over 3 years ago - 521 downloads - 285 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: *
Latest release: almost 2 years ago - 403 downloads - 849 dependencies
nfcore/vipr latest

A docker container for VIPR

  • version: *
Latest release: about 6 years ago - 560 downloads - 223 dependencies
nfcore/bactmap dev

A Docker container for the bactmap pipeline.

  • version: *
Latest release: over 5 years ago - 782 downloads - 223 dependencies
cimendes/splicing-pipelines-nf 3.1.ubuntu

  • version: *
Latest release: almost 2 years ago - 237 downloads - 227 dependencies
nfcore/cutandrun dev

  • version: *
Latest release: over 3 years ago - 452 downloads - 183 dependencies
chgyi/bio 3.5.1

  • version: *
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
ctomlins/testuniv_update latest

  • version: *
Latest release: almost 4 years ago - 153 downloads - 758 dependencies
evolbioinfo/trimgalore v0.6.7

https://github.com/FelixKrueger/TrimGalore/

  • version: *
Latest release: about 2 years ago - 217 downloads - 330 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: *
Latest release: almost 2 years ago - 131 downloads - 1,081 dependencies
chgyi/metaware_rna_denovo latest

  • version: *
Latest release: over 5 years ago - 132 downloads - 2,095 dependencies
nfcore/guideseq dev

A Docker container for the nf-core/guideseq pipeline.

  • version: *
Latest release: about 5 years ago - 408 downloads - 214 dependencies
trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

  • version: *
Latest release: over 3 years ago - 123 downloads - 805 dependencies
biocontainers/eosc-pilot v1.0-remastering_cv1.0

  • version: *
Latest release: about 6 years ago - 109 downloads - 309 dependencies
alexwaldrop/reads2variants v0.0

  • version: *
Latest release: almost 2 years ago - 90 downloads - 660 dependencies
felixschlesinger/scalerna test_bam_write

  • version: *
Latest release: about 1 year ago - 34,541 downloads - 241 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: *
Latest release: almost 2 years ago - 80 downloads - 494 dependencies
ctomlins/trim_galore latest

  • version: *
Latest release: about 3 years ago - 77 downloads - 357 dependencies
ctomlins/testuniv latest

  • version: *
Latest release: about 3 years ago - 69 downloads - 536 dependencies
ctomlins/fastqc latest

  • version: *
Latest release: over 3 years ago - 504 downloads - 359 dependencies
jlund256/xeno_rna-seq latest

  • version: *
Latest release: almost 2 years ago - 1,351 downloads - 902 dependencies
luisas/rnaseq 0.3

  • version: *
Latest release: almost 5 years ago - 56 downloads - 571 dependencies
doejgi/trinityrnaseq-wdl 2.11.0b

  • version: *
Latest release: over 1 year ago - 331 downloads - 980 dependencies
mlepetit/cellranger 1.1

  • version: *
Latest release: almost 2 years ago - 44 downloads - 287 dependencies
hoonbiolab/pepatac v1.1

  • version: *
Latest release: about 3 years ago - 43 downloads - 1,213 dependencies
iracooke/moqc 0.42

  • version: *
Latest release: almost 2 years ago - 52 downloads - 529 dependencies
nbutter/star latest

RNASeq_FASTQ-Counts

  • version: *
Latest release: over 4 years ago - 35 downloads - 434 dependencies
hoonbiolab/fastqc v1.1

  • version: *
Latest release: about 3 years ago - 39 downloads - 799 dependencies
ctomlins/tellread_2022 latest

  • version: *
Latest release: almost 2 years ago - 34 downloads - 711 dependencies
intelliseqngs/bco-app-a-thon latest

  • version: *
Latest release: about 5 years ago - 29 downloads - 6,179 dependencies
sheffieldbioinformatics/unix-training latest

  • version: *
Latest release: almost 2 years ago - 126 downloads - 1,221 dependencies
ctomlins/bcl2fastq latest

  • version: *
Latest release: over 3 years ago - 28 downloads - 474 dependencies
jpsmith5/peppro latest

  • version: *
Latest release: almost 2 years ago - 29 downloads - 1,163 dependencies
bryoinformatics/rna-seq v1.0.0

A container for the RNAseq pipeline (https://github.com/bryoinformatics/RNAseq).

  • version: *
Latest release: over 1 year ago - 140 downloads - 188 dependencies
intelliseqngs/prodia_fastqc 1.0.0

  • version: *
Latest release: about 2 years ago - 35 downloads - 266 dependencies
tercen/trimgalore_docker_operator latest

  • version: *
Latest release: over 2 years ago - 26 downloads - 1,458 dependencies
1995aileen/banana 1.0

  • version: *
Latest release: almost 2 years ago - 22 downloads - 116 dependencies
crukmi/target-snakemake-docker latest

  • version: *
Latest release: over 2 years ago - 21 downloads - 1,148 dependencies
chgyi/metawrap latest

  • version: *
Latest release: almost 6 years ago - 22 downloads - 199 dependencies
bokebiotech/qcpipe v6

  • version: *
Latest release: over 1 year ago - 115 downloads - 1,186 dependencies
alexwaldrop/fastqc v0.11.9

  • version: *
Latest release: almost 2 years ago - 22 downloads - 192 dependencies
koki/urchin_workflow_bioconda 20220527

  • version: *
Latest release: over 2 years ago - 26 downloads - 1,195 dependencies
todachuy2406/fastqc v2511

  • version: *
Latest release: almost 2 years ago - 22 downloads - 271 dependencies
chriswyatt/my-image latest

  • version: *
Latest release: over 2 years ago - 20 downloads - 104 dependencies
almadengenomics/trimgalore 0.6.5

  • version: *
Latest release: almost 2 years ago - 20 downloads - 283 dependencies
biodancer/nasap_performance latest

write later

  • version: *
Latest release: almost 2 years ago - 18 downloads - 2,006 dependencies
qdidiscoveryservices/gatk-v2461_bwa_vardict latest

  • version: *
Latest release: over 1 year ago - 15 downloads - 1,069 dependencies
bryoinformatics/variant-id v1.0.0

A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).

  • version: *
Latest release: over 1 year ago - 93 downloads - 479 dependencies
delaugustin/fastqc v0.11.9

  • version: *
Latest release: almost 2 years ago - 14 downloads - 269 dependencies
jpcartailler/taha 0.7

  • version: *
Latest release: over 1 year ago - 22 downloads - 788 dependencies
yiluxiangbei/pumpkin-genomealign-notebook 1.0

  • version: *
Latest release: almost 3 years ago - 13 downloads - 2,028 dependencies
jcbn/dest_v2.5 latest

Updated version of the DEST pipeline

  • version: *
Latest release: over 1 year ago - 29 downloads - 633 dependencies
yiluxiangbei/pumpkin-gene-genomealign 20220216

  • version: *
Latest release: almost 3 years ago - 14 downloads - 2,116 dependencies
chgyi/trinity 2.8.4

  • version: *
Latest release: over 5 years ago - 13 downloads - 795 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: *
Latest release: over 1 year ago - 60 downloads - 571 dependencies