Ecosyste.ms: Docker
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Package Usage : maven : cisd-jhdf5:cisd-jhdf5
Explore the latest package usage data for cisd-jhdf5:cisd-jhdf5 in the maven ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 159
Total downloads: 2,028,040
More details on packages.ecosyste.ms - JSON
broadinstitute/gtex_rnaseq V10pg
GTEx RNA-seq pipeline: alignment (STAR), QC (RNA-SeQC), expression quantification (RSEM & RNA-SeQC)
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broadinstitute/viral-core latest
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nfcore/methylseq dev
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.
- version: *
nfcore/atacseq latest
A Docker container for the nf-core/atacseq pipeline.
- version: *
nfcore/eager 2.5.0
A Docker image for the nf-core/eager pipeline.
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nfcore/smrnaseq dev
A Docker container for the nf-core/smrnaseq pipeline.
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broadinstitute/viral-ngs latest
See: https://viral-ngs.readthedocs.io/en/latest/
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nfcore/ampliseq dev
A Docker image for nf-core/ampliseq.
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broadinstitute/viral-assemble latest
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broadinstitute/viral-phylo 2.0.21.5
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dhspence/docker-trimgalore latest
trimgalore, cutadapt, on top of docker-genomic-analysis
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bactopia/qc_reads 1.7.1
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sanogenetics/fastqc 0.11.9
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nfcore/bcellmagic dev
A preliminary container for the bcellmagic pipeline
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genomicmedicinesweden/gms-artic-nanopore 0c599b9
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nfcore/smartseq2 dev
A docker container for the nf-core/smartseq2 pipeline.
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nfcore/nascent dev
Nascent Transcription Processing Pipeline
- version: *
nfcore/sarek 2.7.2
A Docker container for the nf-core/sarek pipeline
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nfcore/slamseq dev
A docker image for nf-core/slamseq
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nfcore/kmermaid dev
A Docker container for the nf-core/kmermaid pipelin
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intelliseqngs/fastqc 1.2.1
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nfcore/nanoseq dev
Nanopore demultiplexing, QC and alignment pipeline
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nfcore/bacass dev
A Docker container for the nf-core/bacass pipeline.
- version: *
nfcore/coproid 1.1.1
A Docker image for the nf-core/coproid pipeline.
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nfcore/mnaseseq latest
A Docker container for the nf-core/mnaseseq pipeline.
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nfcore/exoseq dev
A docker container for the ExoSeq pipeline
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nfcore/lncpipe dev
A Docker image for nf-core/lncpipe
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nfcore/denovohybrid dev
A Docker Image for the nf-core/denovohybrid pipeline
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bactopia/gather_samples 2.2.0
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evolbioinfo/fastqc v0.11.9
A quality control tool for high throughput sequence data.
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qdidiscoveryservices/gatk-v2461_bwa_aws latest
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nfcore/vipr latest
A docker container for VIPR
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nfcore/bactmap dev
A Docker container for the bactmap pipeline.
- version: *
cimendes/splicing-pipelines-nf 3.1.ubuntu
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ctomlins/testuniv_update latest
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evolbioinfo/trimgalore v0.6.7
https://github.com/FelixKrueger/TrimGalore/
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qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest
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chgyi/metaware_rna_denovo latest
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nfcore/guideseq dev
A Docker container for the nf-core/guideseq pipeline.
- version: *
trust1/ubuntu OMGv001
Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline
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biocontainers/eosc-pilot v1.0-remastering_cv1.0
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alexwaldrop/reads2variants v0.0
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felixschlesinger/scalerna test_bam_write
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dolphinnext/ont_variant_calling 1.0
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ctomlins/trim_galore latest
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ctomlins/testuniv latest
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ctomlins/fastqc latest
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jlund256/xeno_rna-seq latest
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doejgi/trinityrnaseq-wdl 2.11.0b
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mlepetit/cellranger 1.1
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hoonbiolab/pepatac v1.1
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nbutter/star latest
RNASeq_FASTQ-Counts
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hoonbiolab/fastqc v1.1
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ctomlins/tellread_2022 latest
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intelliseqngs/bco-app-a-thon latest
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sheffieldbioinformatics/unix-training latest
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ctomlins/bcl2fastq latest
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jpsmith5/peppro latest
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bryoinformatics/rna-seq v1.0.0
A container for the RNAseq pipeline (https://github.com/bryoinformatics/RNAseq).
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intelliseqngs/prodia_fastqc 1.0.0
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tercen/trimgalore_docker_operator latest
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1995aileen/banana 1.0
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crukmi/target-snakemake-docker latest
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chgyi/metawrap latest
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bokebiotech/qcpipe v6
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alexwaldrop/fastqc v0.11.9
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koki/urchin_workflow_bioconda 20220527
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todachuy2406/fastqc v2511
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chriswyatt/my-image latest
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almadengenomics/trimgalore 0.6.5
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biodancer/nasap_performance latest
write later
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qdidiscoveryservices/gatk-v2461_bwa_vardict latest
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bryoinformatics/variant-id v1.0.0
A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).
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delaugustin/fastqc v0.11.9
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yiluxiangbei/pumpkin-genomealign-notebook 1.0
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jcbn/dest_v2.5 latest
Updated version of the DEST pipeline
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yiluxiangbei/pumpkin-gene-genomealign 20220216
- version: *
sebrauschert/amplicon_pipeline v0.3.2
A pipeline for amplicon sequencing analysis of marine fish
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