Package Usage : maven : cisd-jhdf5:cisd-jhdf5
Explore the latest package usage data for cisd-jhdf5:cisd-jhdf5 in the maven ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 159
Total downloads: 2,028,040
Showing first 100 dependents
More details on packages.ecosyste.ms - JSON
ctomlins/tellread_2022 latest
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nfcore/eager 2.5.3
A Docker image for the nf-core/eager pipeline.
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qdidiscoveryservices/bspipe 0.1.0
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biodancer/nasap_performance latest
write later
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nbutter/star latest
RNASeq_FASTQ-Counts
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genomicmedicinesweden/gms-artic-nanopore 0c599b9
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dolphinnext/ont_variant_calling 1.0
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ctomlins/trim_galore latest
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nfcore/methylseq 1.6.1
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.
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glevdoug/fastqc_0.11.5 v1.1
Updated Docker schema for older fastqc
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sebrauschert/amplicon_pipeline v0.3.2
A pipeline for amplicon sequencing analysis of marine fish
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ctomlins/testuniv latest
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qdidiscoveryservices/gatk-v2461_bwa_aws latest
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sheffieldbioinformatics/unix-training latest
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ctomlins/bcl2fastq latest
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jpsmith5/peppro 0.10.2
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bryoinformatics/rna-seq v1.0.0
A container for the RNAseq pipeline (https://github.com/bryoinformatics/RNAseq).
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qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest
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intelliseqngs/prodia_fastqc 1.0.0
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ctomlins/testuniv_update latest
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salvacasani/fastqc latest
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fischbachlab/nf-miti-projects latest
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chgyi/metaware_rna_denovo latest
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almadengenomics/trimgalore 0.6.5
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awanydenis/trim-galore 0.6.7
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trust1/ubuntu OMGv001
Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline
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nolandocker/chipseq latest
Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.
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andrewatmp/qiime_unzip latest
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cricker3/emseq_align v1.0
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bokebiotech/qcpipe v6
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qdidiscoveryservices/gatk-v2461_bwa_vardict latest
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yuyanying/conda_preprocess latest
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bryoinformatics/variant-id v1.0.0
A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).
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djbradshaw2/trimgalore latest
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brianyee/rnaseq snakemake_1.0.0
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dabbleofdevops/nextneopi 20230817
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ctomlins/tseq_2 latest
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ctomlins/tseq latest
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hremon331046/neoantigen-vaccine-pipeline nf-pipeline
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jcbn/dest_v2.5 latest
Updated version of the DEST pipeline
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chriswyatt/test_nextflow latest
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chriswyatt/test_mamba latest
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jorgeamaya/ci_barcode_terra_dada2_iseq v1
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nfcore/atacseq 1.2.2
A Docker container for the nf-core/atacseq pipeline.
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bioinformaticsmusc/biocm-cli 1.0.13
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umasstr/mageckvispr latest
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tercen/trimgalore_docker_operator 0.1.0
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andrewsg/atac latest
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lesbiangreat/bioinfor_dev v0.64
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yunagaoka/ubuntu22.04 0.1.2
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crukmi/target-snakemake-docker 3.2.2
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sbouslama/sb-mpxv-nf alpha3
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chaunceyzhou/awesome_rnaseq v2.0
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alexwaldrop/fastqc v0.11.9
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albicans2021/fastqc 1.0
Base image is Alpine linux which installed only java8, perl, unzip, and fastqc_v0.11.9
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koki/urchin_workflow_bioconda 20250823
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koji11235/rnaseq_env latest
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todachuy2406/fastqc v2511
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pauffret/trimming-box 1.0
Docker image containing trimming tools requirements for SSDS DMC1 pipeline.
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shaodongwei/metagenomics v2
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feserm/my-image latest
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lazzarigioele/edacicola latest
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npcooley/nmdctest01 1.0
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jysgro/fastqc ub2306_12.1
fastqc 12.1 under Ubuntu 23.04
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nrminor/lowov-wgs v1.5
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danhumassmed/picard-trimmomatic 1.0.2
Software for Bioinformatics pipelines Picard & Trimmomatic
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nfcore/smrnaseq 1.1.0
A Docker container for the nf-core/smrnaseq pipeline.
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nfcore/slamseq 1.0.0
A docker image for nf-core/slamseq
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broadinstitute/viral-ngs 1.25.0
See: https://viral-ngs.readthedocs.io/en/latest/
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nfcore/kmermaid dev
A Docker container for the nf-core/kmermaid pipelin
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felixschlesinger/scalerna bcparser_bam_out
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intelliseqngs/fastqc 1.2.1
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toniher/testwave 5d7e95fdc1ccd27e
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timothystephens/genotype_samples 0.0.1
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nfcore/ampliseq 1.2.0
A Docker image for nf-core/ampliseq.
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nfcore/nanoseq 1.1.0
Nanopore demultiplexing, QC and alignment pipeline
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sanogenetics/fastqc 0.11.9
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yiluxiangbei/pumpkin-genomealign-notebook 1.0
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nfcore/clipseq 1.0.0
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sangerbentleygroup/a1_bioinformatics_training 1.0.3
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broadinstitute/viral-assemble latest
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broadinstitute/viral-phylo 2.0.21.5
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dhspence/docker-trimgalore latest
trimgalore, cutadapt, on top of docker-genomic-analysis
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