Package Usage : maven : cisd-jhdf5:cisd-jhdf5
Explore the latest package usage data for cisd-jhdf5:cisd-jhdf5 in the maven ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 159
Total downloads: 2,028,040
More details on packages.ecosyste.ms - JSON
broadinstitute/gtex_rnaseq V10pg
GTEx RNA-seq pipeline: alignment (STAR), QC (RNA-SeQC), expression quantification (RSEM & RNA-SeQC)
- version: *
broadinstitute/viral-core 2.0.21
- version: *
nfcore/methylseq 1.6.1
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.
- version: *
nfcore/atacseq 1.2.2
A Docker container for the nf-core/atacseq pipeline.
- version: *
nfcore/eager 2.5.3
A Docker image for the nf-core/eager pipeline.
- version: *
nfcore/smrnaseq 1.1.0
A Docker container for the nf-core/smrnaseq pipeline.
- version: *
broadinstitute/viral-ngs 1.25.0
See: https://viral-ngs.readthedocs.io/en/latest/
- version: *
nfcore/ampliseq 1.2.0
A Docker image for nf-core/ampliseq.
- version: *
broadinstitute/viral-assemble latest
- version: *
broadinstitute/viral-phylo 2.0.21.5
- version: *
dhspence/docker-trimgalore latest
trimgalore, cutadapt, on top of docker-genomic-analysis
- version: *
bactopia/qc_reads 1.7.1
- version: *
sanogenetics/fastqc 0.11.9
- version: *
nfcore/bcellmagic 1.2.0
A preliminary container for the bcellmagic pipeline
- version: *
genomicmedicinesweden/gms-artic-nanopore 0c599b9
- version: *
nfcore/smartseq2 dev
A docker container for the nf-core/smartseq2 pipeline.
- version: *
nfcore/nascent dev
Nascent Transcription Processing Pipeline
- version: *
nfcore/sarek 2.7.2
A Docker container for the nf-core/sarek pipeline
- version: *
nfcore/slamseq 1.0.0
A docker image for nf-core/slamseq
- version: *
nfcore/kmermaid dev
A Docker container for the nf-core/kmermaid pipelin
- version: *
intelliseqngs/fastqc 1.2.1
- version: *
nfcore/nanoseq 1.1.0
Nanopore demultiplexing, QC and alignment pipeline
- version: *
nfcore/clipseq 1.0.0
- version: *
nfcore/bacass 1.1.1
A Docker container for the nf-core/bacass pipeline.
- version: *
nfcore/coproid 1.1.1
A Docker image for the nf-core/coproid pipeline.
- version: *
nfcore/mnaseseq 1.0.0
A Docker container for the nf-core/mnaseseq pipeline.
- version: *
nfcore/exoseq dev
A docker container for the ExoSeq pipeline
- version: *
nfcore/lncpipe dev
A Docker image for nf-core/lncpipe
- version: *
nfcore/denovohybrid dev
A Docker Image for the nf-core/denovohybrid pipeline
- version: *
bactopia/gather_samples 2.2.0
- version: *
evolbioinfo/fastqc v0.11.9
A quality control tool for high throughput sequence data.
- version: *
qdidiscoveryservices/gatk-v2461_bwa_aws latest
- version: *
nfcore/vipr latest
A docker container for VIPR
- version: *
nfcore/bactmap dev
A Docker container for the bactmap pipeline.
- version: *
cimendes/splicing-pipelines-nf 3.1.ubuntu
- version: *
nfcore/cutandrun dev
- version: *
ctomlins/testuniv_update latest
- version: *
evolbioinfo/trimgalore v0.6.7
https://github.com/FelixKrueger/TrimGalore/
- version: *
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest
- version: *
chgyi/metaware_rna_denovo latest
- version: *
nfcore/guideseq dev
A Docker container for the nf-core/guideseq pipeline.
- version: *
trust1/ubuntu OMGv001
Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline
- version: *
biocontainers/eosc-pilot v1.0-remastering_cv1.0
- version: *
alexwaldrop/reads2variants v0.0
- version: *
felixschlesinger/scalerna bcparser_bam_out
- version: *
dolphinnext/ont_variant_calling 1.0
- version: *
ctomlins/trim_galore latest
- version: *
ctomlins/testuniv latest
- version: *
ctomlins/fastqc latest
- version: *
jlund256/xeno_rna-seq latest
- version: *
doejgi/trinityrnaseq-wdl 2.15.1
- version: *
mlepetit/cellranger 7.0.0
- version: *
hoonbiolab/pepatac v1.1
- version: *
nbutter/star latest
RNASeq_FASTQ-Counts
- version: *
hoonbiolab/fastqc v1.1
- version: *
ctomlins/tellread_2022 latest
- version: *
intelliseqngs/bco-app-a-thon latest
- version: *
sheffieldbioinformatics/unix-training latest
- version: *
ctomlins/bcl2fastq latest
- version: *
jpsmith5/peppro 0.10.2
- version: *
bryoinformatics/rna-seq v1.0.0
A container for the RNAseq pipeline (https://github.com/bryoinformatics/RNAseq).
- version: *
intelliseqngs/prodia_fastqc 1.0.0
- version: *
tercen/trimgalore_docker_operator 0.1.0
- version: *
crukmi/target-snakemake-docker 3.2.2
- version: *
bokebiotech/qcpipe v6
- version: *
alexwaldrop/fastqc v0.11.9
- version: *
koki/urchin_workflow_bioconda 20240711
- version: *
todachuy2406/fastqc v2511
- version: *
chriswyatt/my-image latest
- version: *
almadengenomics/trimgalore 0.6.5
- version: *
biodancer/nasap_performance latest
write later
- version: *
qdidiscoveryservices/gatk-v2461_bwa_vardict latest
- version: *
bryoinformatics/variant-id v1.0.0
A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).
- version: *
delaugustin/fastqc v0.11.9
- version: *
yiluxiangbei/pumpkin-genomealign-notebook 1.0
- version: *
jcbn/dest_v2.5 latest
Updated version of the DEST pipeline
- version: *
yiluxiangbei/pumpkin-gene-genomealign 20220216
- version: *
sebrauschert/amplicon_pipeline v0.3.2
A pipeline for amplicon sequencing analysis of marine fish
- version: *