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scgfacility/rstudio-course22 : v0.11

image used to run the course 2022

Latest release: almost 2 years ago - 75 downloads - 382 dependencies

JSON

Dependencies

RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.1.7
Rhdf5lib 1.20.0
Rtsne 0.16
S4Vectors 0.36.0
SCutils 1.112
ScaledMatrix 1.6.0
Seurat 4.3.0
SeuratObject 4.1.3
SingleCellExperiment 1.20.0
SingleR 2.0.0
SparseM 1.81
SummarizedExperiment 1.28.0
TH.data 1.1-1
XVector 0.38.0
abind 1.4-5
ape 5.6-2
aplot 0.1.9
argparse 2.1.6
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.2
beachmat 2.14.0
beachtest 1.0.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
boot 1.3-28
brew 1.0-8
brio 1.1.3
broom 1.0.1
bslib 0.4.1
caTools 1.18.2
cachem 1.0.6
callr 3.7.3
car 3.1-1
carData 3.0-5
celldex 1.8.0
checkmate 2.1.0
class 7.3-20
cli 3.4.1
clipr 0.8.0
cluster 2.1.4
clusterProfiler 4.6.0
clustree 0.5.0
coda 0.19-4
codetools 0.2-18
coin 1.4-2
colorspace 2.0-3
colourpicker 1.2.0
commonmark 1.8.1
compiler 4.2.2
corrplot 0.92
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
curl 4.3.3
data.table 1.14.6
datasets 4.2.2
dbplyr 2.2.1
deldir 1.0-6
desc 1.4.2
devtools 2.4.5
diffobj 0.3.5
digest 0.6.30
doParallel 1.0.17
docopt 0.7.1
downlit 0.4.2
downloader 0.4
dplyr 1.0.10
dqrng 0.3.0
edgeR 3.40.0
ellipsis 0.3.2
enrichplot 1.18.1
evaluate 0.18
fansi 1.0.3
farver 2.1.1
fastcluster 1.2.3
fastmap 1.1.0
fastmatch 1.1-3
fgsea 1.24.0
filelock 1.0.2
findpython 1.0.7
fitdistrplus 1.1-8
fontawesome 0.4.0
foreach 1.5.2
foreign 0.8-83
formatR 1.12
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.10.0
future 1.29.0
generics 0.1.3
gert 1.9.1
ggExtra 0.10.0
ggforce 0.4.1
ggfun 0.0.9
ggnewscale 0.4.8
ggplot2 3.4.0
ggplotify 0.1.0
ggpubr 0.5.0
ggraph 2.1.0
ggrepel 0.9.2
ggridges 0.5.4
ggsci 2.9
ggsignif 0.6.4
ggthemes 4.2.4
ggtree 3.6.2
gh 1.3.1
gitcreds 0.1.2
glmGamPoi 1.10.0
globals 0.16.2
glue 1.6.2
goftest 1.2-3
gplots 3.1.3
grDevices 4.2.2
graphics 4.2.2
graphlayouts 0.8.4
grid 4.2.2
gridExtra 2.3
gridGraphics 0.5-1
gson 0.0.9
gtable 0.3.1
gtools 3.9.3
hdf5r 1.3.7
here 1.0.1
highr 0.9
htmltools 0.5.3
htmlwidgets 1.5.4
httpuv 1.6.6
httr 1.4.4
ica 1.0-3
igraph 1.3.5
infercnv 1.14.0
ini 0.3.1
interactiveDisplayBase 1.36.0
irlba 2.3.5.1
isoband 0.2.6
iterators 1.0.14
jquerylib 0.1.4
jsonlite 1.8.3
kableExtra 1.3.4
knitr 1.41
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
lazyeval 0.2.2
leiden 0.4.3
libcoin 1.0-9
lifecycle 1.0.3
limma 3.54.0
listenv 0.8.0
littler 0.3.17
lme4 1.1-31
lmtest 0.9-40
locfit 1.5-9.6
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.2.2
mgcv 1.8-41
mime 0.12
miniUI 0.1.1.1
minqa 1.2.5
modeltools 0.2-23
morebeach 1.0.0
morebeachtests 1.0.0
multcomp 1.4-20
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-160
nloptr 2.0.3
nnet 7.3-18
numDeriv 2016.8-1.1
openssl 2.0.4
org.Hs.eg.db 3.16.0
org.testing.db 0.1
parallel 4.2.2
parallelDist 0.2.6
parallelly 1.32.1
patchwork 1.1.2
pbapply 1.6-0
pbkrtest 0.5.1
pheatmap 1.0.12
phyclust 0.1-32
pillar 1.8.1
pkgbuild 1.3.1
pkgconfig 2.0.3
pkgdown 2.0.6
pkgload 1.3.2
plogr 0.2.0
plotly 4.10.1
plyr 1.8.8
png 0.1-7
polyclip 1.10-4
polynom 1.4-1
praise 1.0.0
prettyunits 1.1.1
processx 3.8.0
profvis 0.3.7
progressr 0.11.0
promises 1.2.0.1
ps 1.7.2
purrr 0.3.5
quantreg 5.94
qvalue 2.30.0
ragg 1.2.4
rappdirs 0.3.3
rcmdcheck 1.4.0
rematch2 2.1.2
remotes 2.4.2
reshape2 1.4.4
reticulate 1.26
rhdf5 2.42.0
rhdf5filters 1.10.0
rjags 4-13
rlang 1.0.6
rmarkdown 2.18
roxygen2 7.2.2
rpart 4.1.19
rprojroot 2.0.3
rstatix 0.7.1
rstudioapi 0.14
rsvd 1.0.5
rversions 2.1.2
rvest 1.0.3
sandwich 3.0-2
sass 0.4.4
scales 1.2.1
scattermore 0.8
scatterpie 0.1.8
scatterplot3d 0.3-42
sctransform 0.3.5
selectr 0.4-2
sessioninfo 1.2.2
shadowtext 0.1.2
shiny 1.7.3
shinyjs 2.1.0
sitmo 2.0.2
snow 0.4-4
sourcetools 0.1.7
sp 1.5-1
sparseMatrixStats 1.10.0
spatial 7.3-15
spatstat.data 3.0-0
spatstat.explore 3.0-5
spatstat.geom 3.0-3
spatstat.random 3.0-1
spatstat.sparse 3.0-0
spatstat.utils 3.0-1
splines 4.2.2
stats4 4.2.2
stats 4.2.2
stringi 1.7.8
stringr 1.4.1
survival 3.4-0
svglite 2.1.0
sys 3.4.1
systemfonts 1.0.4
tcltk 4.2.2
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.5
textshaping 0.3.6
tibble 3.1.8
tidygraph 1.2.2
tidyr 1.2.1
tidyselect 1.2.0
tidytree 0.4.1
tinytex 0.42
tools 4.2.2
translations 4.2.2
treeio 1.22.0
tweenr 2.0.2
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.2
utils 4.2.2
uwot 0.1.14
vctrs 0.5.1
viridis 0.6.2
viridisLite 0.4.1
waldo 0.4.0
webshot 0.5.4
whisker 0.4
withr 2.5.0
xfun 0.35
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.6
yulab.utils 0.0.5
zip 2.2.2
zlibbioc 1.44.0
zoo 1.8-11
@PKGNAME@ @VERSION@
AnnotationDbi 1.60.0
AnnotationHub 3.6.0
BH 1.78.0-0
Biobase 2.58.0
BiocFileCache 2.6.0
BiocGenerics 0.44.0
BiocManager 1.30.19
BiocNeighbors 1.16.0
BiocParallel 1.32.3
BiocSingular 1.14.0
BiocVersion 3.16.0
Biostrings 2.66.0
DBI 1.1.3
DOSE 3.24.2
DT 0.26
DelayedArray 0.24.0
DelayedMatrixStats 1.20.0
ExperimentHub 2.6.0
FNN 1.1.3.1
GO.db 3.16.0
GOSemSim 2.24.0
GenomeInfoDb 1.34.3
GenomeInfoDbData 1.2.9
GenomicRanges 1.50.1
HDF5Array 1.26.0
HDO.db 0.99.1
HiddenMarkov 1.8-13
IRanges 2.32.0
KEGGREST 1.38.0
KernSmooth 2.23-20
MASS 7.3-58.1
Matrix 1.5-1
MatrixGenerics 1.10.0
MatrixModels 0.5-1
Polychrome 1.5.1
R6 2.5.1
RANN 2.6.1
RColorBrewer 1.1-3
RCurl 1.98-1.9
ROCR 1.0-11
RSQLite 2.2.19
Rcpp 1.0.9
RcppAnnoy 0.0.20
RcppArmadillo 0.11.4.2.1
RcppEigen 0.3.3.9.3
RcppHNSW 0.4.1
RcppParallel 5.1.5
RcppProgress 0.4.2

bash 5.1.16
python 2.7.18
python 3.10.6

github.com/evanw/esbuild v0.0.0-20220511215310-7abb7d8496d4
golang.org/x/sys v0.0.0-20210908233432-aa78b53d3365
stdlib 1.18.1

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.1.3
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.1.3
casperjs 1.1.0-beta5

PyGObject 3.42.1
argparse 1.2.1
dbus-python 1.2.18
setuptools 44.1.1
wsgiref 0.1.2