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arnstrm2/rstudio : 4.3.1
R studio with Bioconductor and snRNAseq packages
Latest release: about 1 year ago - 24 downloads - 1,444 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.62.2
- AnnotationFilter 1.24.0
- BH 1.81.0-1
- BSgenome.Hsapiens.UCSC.hg38 1.4.5
- BSgenome.Mmusculus.UCSC.mm10 1.4.3
- BSgenome.Rnorvegicus.UCSC.rn7 1.4.3
- BSgenome 1.68.0
- Biobase 2.60.0
- BiocFileCache 2.8.0
- BiocGenerics 0.46.0
- BiocIO 1.10.0
- BiocManager 1.30.22
- BiocParallel 1.34.2
- BiocVersion 3.17.1
- Biostrings 2.68.1
- ComplexHeatmap 2.16.0
- DBI 1.1.3
- DESeq2 1.40.2
- DEoptimR 1.1-1
- DelayedArray 0.26.7
- EnsDb.Hsapiens.v75 2.99.0
- EnsDb.Hsapiens.v86 2.99.0
- EnsDb.Mmusculus.v79 2.99.0
- EnsDb.Rnorvegicus.v79 2.99.0
- FNN 1.1.3.2
- GSEABase 1.62.0
- GenomeInfoDb 1.36.2
- GenomeInfoDbData 1.2.10
- GenomicAlignments 1.36.0
- GenomicFeatures 1.52.2
- GenomicRanges 1.52.0
- GetoptLong 1.0.5
- GlobalOptions 0.1.2
- IRanges 2.34.1
- KEGGREST 1.40.0
- KernSmooth 2.23-22
- MASS 7.3-60
- Matrix 1.6-1
- MatrixGenerics 1.12.3
- MatrixModels 0.5-2
- ProtGenerics 1.32.0
- R.methodsS3 1.8.2
- R.oo 1.25.0
- R.utils 2.12.2
- R6 2.5.1
- RANN 2.6.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.12
- ROCR 1.0-11
- RSQLite 2.3.1
- Rcpp 1.0.11
- RcppAnnoy 0.0.21
- RcppArmadillo 0.12.6.1.0
- RcppEigen 0.3.3.9.3
- RcppParallel 5.1.7
- RcppProgress 0.4.2
- RcppProgressArmadillo 0.2
- RcppProgressETA 0.1
- RcppProgressExample 0.2
- RcppRoll 0.3.0
- RcppTOML 0.2.2
- Rdpack 2.5
- RdpackTester 1.0
- Rhtslib 2.2.0
- Rsamtools 2.16.0
- Rtsne 0.16
- S4Arrays 1.0.5
- S4Vectors 0.38.1
- Seurat 4.3.0.1
- SeuratObject 4.1.3
- Signac 1.10.0
- SingleCellExperiment 1.22.0
- SnowballC 0.7.1
- SparseM 1.81
- SummarizedExperiment 1.30.2
- TFisher 0.2.0
- TH.data 1.1-2
- TissueEnrich 1.20.0
- XML 3.99-0.14
- XVector 0.40.0
- abind 1.4-5
- anndata 0.7.5.6
- annotate 1.78.0
- askpass 1.1
- assertthat 0.2.1
- backports 1.4.1
- base64enc 0.1-3
- base 4.3.1
- biomaRt 2.56.1
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.4
- boot 1.3-28.1
- brew 1.0-8
- brio 1.1.3
- broom 1.0.5
- bslib 0.5.1
- caTools 1.18.2
- cachem 1.0.8
- calibrate 1.7.7
- callr 3.7.3
- cellranger 1.1.0
- circlize 0.4.15
- class 7.3-22
- cli 3.6.1
- clipr 0.8.0
- clue 0.3-64
- cluster 2.1.4
- codetools 0.2-19
- colorspace 2.1-0
- commonmark 1.9.0
- compiler 4.3.1
- conflicted 1.2.0
- cowplot 1.1.1
- cpp11 0.4.6
- crayon 1.5.2
- credentials 1.3.2
- crosstalk 1.2.0
- curl 5.0.2
- data.table 1.14.8
- datasets 4.3.1
- dbplyr 2.3.3
- deldir 1.0-9
- desc 1.4.2
- devtools 2.4.5
- diffobj 0.3.5
- digest 0.6.33
- dittoSeq 1.12.1
- doParallel 1.0.17
- docopt 0.7.1
- downlit 0.4.3
- dplyr 1.1.2
- dqrng 0.3.0
- dtplyr 1.3.1
- ellipsis 0.3.2
- enhancedDimPlot 0.0.0.9100
- ensembldb 2.24.0
- ensurer 1.1
- evaluate 0.21
- fansi 1.0.4
- farver 2.1.1
- fastmap 1.1.1
- fastmatch 1.1-4
- filelock 1.0.2
- fitdistrplus 1.1-11
- fontawesome 0.5.2
- forcats 1.0.0
- foreach 1.5.2
- foreign 0.8-84
- formatR 1.14
- fs 1.6.3
- futile.logger 1.4.3
- futile.options 1.0.1
- future.apply 1.11.0
- future 1.33.0
- gargle 1.5.2
- generics 0.1.3
- gert 1.9.3
- ggplot2 3.4.3
- ggrepel 0.9.3
- ggridges 0.5.4
- gh 1.4.0
- gitcreds 0.1.2
- globals 0.16.2
- glue 1.6.2
- goftest 1.2-3
- googledrive 2.1.1
- googlesheets4 1.1.1
- gplots 3.1.3
- gprofiler2 0.2.2
- grDevices 4.3.1
- graph 1.78.0
- graphics 4.3.1
- grid 4.3.1
- gridExtra 2.3
- gtable 0.3.4
- gtools 3.9.4
- haven 2.5.3
- hdf5r 1.3.8
- here 1.0.1
- highr 0.10
- hms 1.1.3
- htmltools 0.5.6
- htmlwidgets 1.6.2
- httpuv 1.6.11
- httr2 0.2.3
- httr 1.4.7
- ica 1.0-3
- ids 1.0.1
- igraph 1.5.1
- ini 0.3.1
- irlba 2.3.5.1
- isoband 0.2.7
- iterators 1.0.14
- janeaustenr 1.0.0
- jquerylib 0.1.4
- jsonlite 1.8.7
- kableExtra 1.3.4
- knitr 1.43
- labeling 0.4.2
- lambda.r 1.2.4
- later 1.3.1
- lattice 0.21-8
- lazyeval 0.2.2
- leiden 0.4.3
- lifecycle 1.0.3
- limma 3.56.2
- listenv 0.9.0
- littler 0.3.18
- lmtest 0.9-40
- locfit 1.5-9.8
- lubridate 1.9.2
- magrittr 2.0.3
- mathjaxr 1.6-0
- matrixStats 1.0.0
- memoise 2.0.1
- methods 4.3.1
- mgcv 1.9-0
- mime 0.12
- miniUI 0.1.1.1
- mnormt 2.1.1
- modelr 0.1.11
- multcomp 1.4-25
- multtest 2.56.0
- munsell 0.5.0
- mvtnorm 1.2-2
- mvtnormAPI 1.0-0
- nlme 3.1-163
- nnet 7.3-19
- numDeriv 2016.8-1.1
- openssl 2.1.0
- org.Hs.eg.db 3.17.0
- org.Mm.eg.db 3.17.0
- org.Rn.eg.db 3.17.0
- org.testing.db 0.1
- paletteer 1.5.0
- parallel 4.3.1
- parallelly 1.36.0
- patchwork 1.1.3
- pbapply 1.7-2
- pheatmap 1.0.12
- pillar 1.9.0
- pkgbuild 1.4.2
- pkgconfig 2.0.3
- pkgdown 2.0.7
- pkgload 1.3.2.1
- plogr 0.2.0
- plotly 4.10.2
- plotrix 3.8-2
- plyr 1.8.8
- png 0.1-8
- polyclip 1.10-4
- praise 1.0.0
- prettyunits 1.1.1
- prismatic 1.1.1
- processx 3.8.2
- profvis 0.3.8
- progress 1.2.2
- progressr 0.14.0
- promises 1.2.1
- ps 1.7.5
- purrr 1.0.2
- qqconf 1.3.2
- quantreg 5.97
- ragg 1.2.5
- rappdirs 0.3.3
- rbibutils 2.2.15
- rcmdcheck 1.4.0
- readr 2.1.4
- readxl 1.4.3
- rematch2 2.1.2
- rematch 1.0.1
- remotes 2.4.2.1
- reprex 2.0.2
- reshape2 1.4.4
- restfulr 0.0.15
- reticulate 1.31
- rjson 0.2.21
- rlang 1.1.1
- rmarkdown 2.24
- robustbase 0.99-0
- roxygen2 7.2.3
- rpart 4.1.19
- rprojroot 2.0.3
- rstudioapi 0.15.0
- rsvd 1.0.5
- rtracklayer 1.60.1
- rversions 2.1.2
- rvest 1.0.3
- sandwich 3.0-2
- sass 0.4.7
- scales 1.2.1
- scattermore 1.2
- sctransform 0.3.5
- selectr 0.4-2
- sessioninfo 1.2.2
- shape 1.4.6
- shiny 1.7.5
- sitmo 2.0.2
- sn 2.1.1
- snow 0.4-4
- sourcetools 0.1.7-1
- sp 2.0-0
- spatial 7.3-17
- spatstat.data 3.0-1
- spatstat.explore 3.2-1
- spatstat.geom 3.2-4
- spatstat.random 3.1-5
- spatstat.sparse 3.0-2
- spatstat.utils 3.0-3
- splines 4.3.1
- stats4 4.3.1
- stats 4.3.1
- stringi 1.7.12
- stringr 1.5.0
- survival 3.5-7
- svglite 2.1.1
- sys 3.4.2
- systemfonts 1.0.4
- tcltk 4.3.1
- tensor 1.5
- testRcppAttributePackage 1.0
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testthat 3.1.10
- textshaping 0.3.6
- tibble 3.2.1
- tidyr 1.3.0
- tidyselect 1.2.0
- tidytext 0.4.1
- tidyverse 2.0.0
- timechange 0.2.0
- tinytex 0.46
- tokenizers 0.3.0
- tools 4.3.1
- translations 4.3.1
- tzdb 0.4.0
- urlchecker 1.0.1
- usethis 2.2.2
- utf8 1.2.3
- utils 4.3.1
- uuid 1.1-1
- uwot 0.1.16
- vctrs 0.6.3
- viridisLite 0.4.2
- vroom 1.6.3
- waldo 0.5.1
- webshot 0.5.5
- whisker 0.4.1
- withr 2.5.0
- xfun 0.40
- xml2 1.3.5
- xopen 1.0.0
- xtable 1.8-4
- yaml 2.3.7
- zip 2.3.0
- zlibbioc 1.46.0
- zoo 1.8-12
- ubuntu/adduser 3.118ubuntu5
- ubuntu/adwaita-icon-theme 41.0-1ubuntu1
- ubuntu/apt-utils 2.4.10
- ubuntu/apt 2.4.10
- ubuntu/autoconf 2.71-2
- ubuntu/automake 1:1.16.5-1.3
- ubuntu/autotools-dev 20220109.1
- ubuntu/base-files 12ubuntu4.4
- ubuntu/base-passwd 3.5.52build1
- ubuntu/bash-completion 1:2.11-5ubuntu1
- ubuntu/bash 5.1-6ubuntu1
- ubuntu/biber 2.17-2
- ubuntu/binutils-common 2.38-4ubuntu2.3
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- ubuntu/binutils 2.38-4ubuntu2.3
- ubuntu/bsdutils 1:2.37.2-4ubuntu3
- ubuntu/byacc 1:2.0.20220114-1
- ubuntu/bzip2 1.0.8-5build1
- ubuntu/ca-certificates-java 20190909ubuntu1.2
- ubuntu/ca-certificates 20230311ubuntu0.22.04.1
- ubuntu/cmake-data 3.22.1-1ubuntu1.22.04.1
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- ubuntu/comerr-dev 2.1-1.46.5-2ubuntu1.1
- ubuntu/coreutils 8.32-4.1ubuntu1
- ubuntu/cpp-11 11.4.0-1ubuntu1~22.04
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- ubuntu/python3-setuptools-whl 59.6.0-1.2ubuntu0.22.04.1
- ubuntu/python3-setuptools 59.6.0-1.2ubuntu0.22.04.1
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- ubuntu/python3-tz 2022.1-1ubuntu0.22.04.1
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- ubuntu/tcl 8.6.11 1build2
- ubuntu/tex-common 6.17
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- ubuntu/tzdata 2023c-0ubuntu0.22.04.2
- ubuntu/ubuntu-keyring 2021.03.26
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- ubuntu/ucf 3.0043
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- ubuntu/unixodbc-dev 2.3.9-5
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- ubuntu/usrmerge 25ubuntu2
- ubuntu/util-linux 2.37.2-4ubuntu3
- ubuntu/uuid-dev 2.37.2-4ubuntu3
- ubuntu/wget 1.21.2-2ubuntu1
- ubuntu/x11-common 1:7.7 23ubuntu2
- ubuntu/x11proto-dev 2021.5-1
- ubuntu/xfonts-100dpi 1:1.0.4 nmu1.1
- ubuntu/xfonts-75dpi 1:1.0.4 nmu1.1
- ubuntu/xfonts-encodings 1:1.0.5-0ubuntu2
- ubuntu/xfonts-utils 1:7.7 6build2
- ubuntu/xorg-sgml-doctools 1:1.11-1.1
- ubuntu/xtrans-dev 1.4.0-1
- ubuntu/xz-utils 5.2.5-2ubuntu1
- ubuntu/zip 3.0-12build2
- ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu9.2
- ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu9.2
- bash 5.1.16
- github.com/evanw/esbuild v0.0.0-20220830001118-78a1e00b2e69
- golang.org/x/sys v0.0.0-20220715151400-c0bba94af5f8
- stdlib 1.19
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- bootstrap 5.2.2
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- bootswatch 5.2.2
- casperjs 1.1.0-beta5
- mypy 0.902