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almahmoud/terra-jupyter : bioc

Latest release: almost 2 years ago - 9 downloads - 2,217 dependencies

Dependencies

testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
survival 3.4-0
sys 3.4.1
systemfonts 1.0.4
tcltk 4.2.2
tensor 1.5
leiden 0.4.3
lifecycle 1.0.3
limma 3.52.4
listenv 0.8.0
lmtest 0.9-40
locfit 1.5-9.6
lubridate 1.9.0
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
metapod 1.4.0
methods 4.2.2
mgcv 1.8-41
mime 0.12
miniUI 0.1.1.1
modelr 0.1.10
morebeach 1.0.0
morebeachtests 1.0.0
munsell 0.5.0
nlme 3.1-160
nnet 7.3-18
openssl 2.0.4
org.testing.db 0.1
parallel 4.2.2
parallelly 1.32.1
patchwork 1.1.2
pbapply 1.6-0
pbdZMQ 0.3-8
pillar 1.8.1
pkgbuild 1.3.1
pkgconfig 2.0.3
pkgdown 2.0.6
pkgload 1.3.2
plogr 0.2.0
plotly 4.10.1
plyr 1.8.8
png 0.1-7
polyclip 1.10-4
praise 1.0.0
prettyunits 1.1.1
processx 3.8.0
profvis 0.3.7
progress 1.2.2
progressr 0.11.0
promises 1.2.0.1
ps 1.7.2
purrr 0.3.5
ragg 1.2.4
rapiclient 0.1.3
rapidjsonr 1.2.0
rappdirs 0.3.3
rcmdcheck 1.4.0
readr 2.1.3
readxl 1.4.1
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
repr 1.1.4
reprex 2.0.2
reshape2 1.4.4
restfulr 0.0.15
reticulate 1.26
rjson 0.2.21
rlang 1.0.6
rmarkdown 2.18
roxygen2 7.2.2
rpart 4.1.19
rprojroot 2.0.3
rstudioapi 0.14
rsvd 1.0.5
rtracklayer 1.56.1
rversions 2.1.2
rvest 1.0.3
sass 0.4.3
scRNAseq 2.10.0
scales 1.2.1
scattermore 0.8
scran 1.24.1
sctransform 0.3.5
scuttle 1.6.3
selectr 0.4-2
sessioninfo 1.2.2
shiny 1.7.3
sitmo 2.0.2
snow 0.4-4
sourcetools 0.1.7
sp 1.5-1
sparseMatrixStats 1.8.0
spatial 7.3-15
spatstat.data 3.0-0
spatstat.explore 3.0-5
spatstat.geom 3.0-3
spatstat.random 3.0-1
spatstat.sparse 3.0-0
spatstat.utils 3.0-1
splines 4.2.2
statmod 1.4.37
stats4 4.2.2
stats 4.2.2
stringi 1.7.8
stringr 1.4.1
@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnVIL 1.8.7
AnnotationDbi 1.58.0
AnnotationFilter 1.20.0
AnnotationHub 3.4.0
BH 1.78.0-0
Biobase 2.56.0
BiocFileCache 2.4.0
BiocGenerics 0.42.0
BiocIO 1.6.0
BiocManager 1.30.19
BiocNeighbors 1.14.0
BiocParallel 1.30.4
BiocSingular 1.12.0
BiocVersion 3.15.2
Biostrings 2.64.1
DBI 1.1.3
DESeq2 1.36.0
DT 0.26
DelayedArray 0.22.0
DelayedMatrixStats 1.18.2
ExperimentHub 2.4.0
FNN 1.1.3.1
GenomeInfoDb 1.32.4
GenomeInfoDbData 1.2.8
GenomicAlignments 1.32.1
GenomicFeatures 1.48.4
GenomicRanges 1.48.0
IRanges 2.30.1
IRdisplay 1.1
IRkernel 1.3.1
KEGGREST 1.36.3
KernSmooth 2.23-20
MASS 7.3-58.1
Matrix 1.5-3
MatrixGenerics 1.8.1
ProtGenerics 1.28.0
R6 2.5.1
RANN 2.6.1
RColorBrewer 1.1-3
RCurl 1.98-1.9
ROCR 1.0-11
RSQLite 2.2.18
Rcpp 1.0.9
RcppAnnoy 0.0.20
RcppArmadillo 0.11.4.2.1
RcppEigen 0.3.3.9.3
RcppHNSW 0.4.1
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.1.7
Rhtslib 1.28.0
Ronaldo 0.1.0
Rsamtools 2.12.0
Rtsne 0.16
S4Vectors 0.34.0
ScaledMatrix 1.4.1
Seurat 4.3.0
SeuratObject 4.1.3
ShortRead 1.54.0
SingleCellExperiment 1.18.1
SummarizedExperiment 1.26.1
XML 3.99-0.12
XVector 0.36.0
abind 1.4-5
annotate 1.74.0
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.2
beachmat 2.12.0
beachtest 1.0.0
bigrquery 1.4.1
biomaRt 2.52.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
bluster 1.6.0
boot 1.3-28.1
brew 1.0-8
brio 1.1.3
broom 1.0.1
bslib 0.4.1
caTools 1.18.2
cachem 1.0.6
callr 3.7.3
cellranger 1.1.0
class 7.3-20
cli 3.4.1
clipr 0.8.0
cluster 2.1.4
codetools 0.2-18
colorspace 2.0-3
commonmark 1.8.1
compiler 4.2.2
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
curl 4.3.3
data.table 1.14.6
datasets 4.2.2
dbplyr 2.2.1
deldir 1.0-6
desc 1.4.2
devtools 2.4.5
diffobj 0.3.5
digest 0.6.30
downlit 0.4.2
dplyr 1.0.10
dqrng 0.3.0
dtplyr 1.2.2
edgeR 3.38.4
ellipsis 0.3.2
ensembldb 2.20.2
evaluate 0.18
fansi 1.0.3
farver 2.1.1
fastmap 1.1.0
filelock 1.0.2
fitdistrplus 1.1-8
fontawesome 0.4.0
forcats 0.5.2
foreign 0.8-83
formatR 1.12
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.10.0
future 1.29.0
gargle 1.2.1
genefilter 1.78.0
geneplotter 1.74.0
generics 0.1.3
gert 1.9.1
ggplot2 3.4.0
ggrepel 0.9.2
ggridges 0.5.4
gh 1.3.1
gitcreds 0.1.2
globals 0.16.2
glue 1.6.2
goftest 1.2-3
googleAuthR 2.0.0
googleCloudStorageR 0.7.0
googledrive 2.0.0
googlesheets4 1.0.1
gplots 3.1.3
grDevices 4.2.2
graphics 4.2.2
grid 4.2.2
gridExtra 2.3
gtable 0.3.1
gtools 3.9.3
haven 2.5.1
here 1.0.1
highr 0.9
hms 1.1.2
htmltools 0.5.3
htmlwidgets 1.5.4
httpuv 1.6.6
httr 1.4.4
hwriter 1.3.2.1
ica 1.0-3
ids 1.0.1
igraph 1.3.5
ini 0.3.1
interactiveDisplayBase 1.34.0
interp 1.1-3
irlba 2.3.5.1
isoband 0.2.6
jpeg 0.1-9
jquerylib 0.1.4
jsonlite 1.8.3
knitr 1.41
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
latticeExtra 0.6-30
lazyeval 0.2.2
testRcppPackage 0.1.0
testthat 3.1.5
textshaping 0.3.6
tibble 3.1.8
tidyr 1.2.1
tidyselect 1.2.0
tidyverse 1.3.2
timechange 0.1.1
tinytex 0.42
tools 4.2.2
translations 4.2.2
tzdb 0.3.0
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.2
utils 4.2.2
uuid 1.1-0
uwot 0.1.14
vctrs 0.5.1
viridisLite 0.4.1
vroom 1.6.0
waldo 0.4.0
whisker 0.4
withr 2.5.0
xfun 0.35
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.6
zip 2.2.2
zlibbioc 1.42.0
zoo 1.8-11

bash 5.0.17
node 12.22.6
python 2.7.18
python 3.7.10
python 3.7.12
python 3.8.10
python 3.8.11