omicschef/epigenomechef : mm10v1.0.4-beta-arm64

Debian GNU/Linux 10 (buster)

Latest release: over 1 year ago - 390 downloads - 1,066 dependencies

JSON

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.62.2
AnnotationFilter 1.24.0
BH 1.81.0-1
BSgenome 1.68.0
Biobase 2.60.0
BiocBaseUtils 1.2.0
BiocFileCache 2.8.0
BiocGenerics 0.46.0
BiocIO 1.10.0
BiocManager 1.30.22
BiocParallel 1.34.2
BiocVersion 3.17.1
Biostrings 2.68.1
Cairo 1.6-1
ChIPpeakAnno 3.34.1
ChIPseeker 1.36.0
ComplexHeatmap 2.16.0
DBI 1.0.0
DBI 1.1.3
DBItest 1.5-2
DESeq2 1.40.2
DOSE 3.26.1
DT 0.29
DelayedArray 0.26.7
EnrichedHeatmap 1.30.0
FindIT2 1.6.0
Formula 1.2-5
GO.db 3.17.0
GOSemSim 2.26.1
GenomeInfoDb 1.36.2
GenomeInfoDbData 1.2.10
GenomicAlignments 1.36.0
GenomicFeatures 1.52.2
GenomicRanges 1.52.0
GetoptLong 1.0.5
GlobalOptions 0.1.2
Gviz 1.44.1
HDO.db 0.99.1
Hmisc 5.1-0
IRanges 2.34.1
InteractionSet 1.28.1
KEGGREST 1.40.0
KernSmooth 2.23-15
KernSmooth 2.23-21
MASS 7.3-51.1
MASS 7.3-60
Matrix 1.2-15
Matrix 1.5-4.1
Matrix 1.6-1
MatrixGenerics 1.12.3
MatrixModels 0.5-2
MultiAssayExperiment 1.26.0
ProtGenerics 1.32.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.4.0
R6 2.5.1
RBGL 1.76.0
RColorBrewer 1.1-3
RCurl 1.98-1.12
RSQLite 2.1.1
RSQLite 2.3.1
RUnit 0.4.32
Rcpp 1.0.0
Rcpp 1.0.11
RcppArmadillo 0.12.6.3.0
RcppEigen 0.3.3.9.3
Rhtslib12 1.23.2
Rhtslib 2.2.0
Rsamtools 2.16.0
Rsubread 2.14.2
S4Arrays 1.0.5
S4Vectors 0.38.1
ShortRead 1.58.0
SparseM 1.81
SummarizedExperiment 1.30.2
TH.data 1.1-2
TxDb.Btaurus.UCSC.bosTau8.refGene 3.12.0
TxDb.Celegans.UCSC.ce11.refGene 3.4.6
TxDb.Cfamiliaris.UCSC.canFam3.refGene 3.11.0
TxDb.Dmelanogaster.UCSC.dm6.ensGene 3.12.0
TxDb.Drerio.UCSC.danRer10.refGene 3.4.6
TxDb.Ggallus.UCSC.galGal4.refGene 3.12.0
TxDb.Hsapiens.UCSC.hg19.knownGene 3.2.2
TxDb.Hsapiens.UCSC.hg38.knownGene 3.17.0
TxDb.Mmulatta.UCSC.rheMac8.refGene 3.12.0
TxDb.Mmusculus.UCSC.mm10.knownGene 3.10.0
TxDb.Ptroglodytes.UCSC.panTro4.refGene 3.12.0
TxDb.Rnorvegicus.UCSC.rn6.refGene 3.4.6
VariantAnnotation 1.46.0
VennDiagram 1.7.3
XML 3.99-0.14
XVector 0.40.0
abind 1.4-5
admisc 0.33
annotate 1.78.0
ape 5.7-1
aplot 0.2.0
askpass 1.1
assertthat 0.2.0
assertthat 0.2.1
babelgene 22.9
backports 1.1.3
backports 1.4.1
badpackage 1.0.0
base64enc 0.1-3
base 3.5.2
base 4.3.1
bcellViper 1.36.0
bedtorch 0.1.12.12
beeswarm 0.4.0
bindr 0.1.1
bindrcpp 0.2.2
biomaRt 2.56.1
biovizBase 1.48.0
bit64 0.9-7
bit64 4.0.5
bit 1.1-14
bit 4.0.5
bitops 1.0-6
bitops 1.0-7
blob 1.1.1
blob 1.2.4
boot 1.3-20
boot 1.3-28.1
brew 1.0-6
brew 1.0-8
brio 1.1.3
broom 1.0.5
bslib 0.5.1
caTools 1.18.2
cachem 1.0.8
callr 3.1.1
callr 3.7.3
car 3.1-2
carData 3.0-5
cellranger 1.1.0
checkmate 2.2.0
chipseq 1.50.0
circlize 0.4.15
class 7.3-15
class 7.3-22
cli 1.0.1
cli 3.6.1
cliapp 0.1.0
clipr 0.5.0
clipr 0.8.0
clisymbols 1.2.0
clue 0.3-64
cluster 2.0.7-1
cluster 2.1.4
clusterProfiler.dplyr 0.0.2
clusterProfiler 4.8.2
codetools 0.2-16
codetools 0.2-19
colorspace 2.1-0
commonmark 1.7
commonmark 1.9.0
compiler 3.5.2
compiler 4.3.1
conflicted 1.2.0
corrplot 0.92
cowplot 1.1.1
cpp11 0.4.6
crayon 1.3.4
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
curl 3.3
curl 5.0.2
data.table 1.12.0
data.table 1.14.8
datasets 3.5.2
datasets 4.3.1
dbplyr 2.3.3
decoupleR 2.6.0
deldir 1.0-9
desc 1.0.0
desc 1.2.0
desc 1.4.2
devtools 2.0.1
devtools 2.4.5
dichromat 2.0-0.1
diffobj 0.3.5
digest 0.6.18
digest 0.6.33
doParallel 1.0.17
dorothea 1.12.0
downlit 0.4.3
downloader 0.4
dplyr 0.7.8
dplyr 1.1.2
dtplyr 1.3.1
ellipsis 0.3.2
enrichplot 1.20.1
ensembldb 2.24.0
evaluate 0.13
evaluate 0.21
fansi 0.4.0
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
fastmatch 1.1-4
fgsea 1.26.0
filehash 2.4-1
filelock 1.0.2
fontawesome 0.5.2
foo 1.0.0
forcats 1.0.0
foreach 1.5.2
foreign 0.8-71
foreign 0.8-84
formatR 1.14
fs 1.2.6
fs 1.6.3
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.5.2
gdata 2.19.0
genefilter 1.82.1
generics 0.1.3
gert 1.9.3
ggbeeswarm 0.7.2
ggcorrplot 0.1.4
ggdendro 0.1.23
ggforce 0.4.1
ggfun 0.1.2
ggnewscale 0.4.9
ggplot2 3.4.3
ggplotify 0.1.2
ggpubr 0.6.0
ggraph 2.1.0
ggrastr 1.0.2
ggrepel 0.9.3
ggsci 3.0.0
ggseqlogo 0.1
ggsignif 0.6.4
ggtree 3.8.2
gh 1.0.1
gh 1.4.0
git2r 0.24.0
gitcreds 0.1.2
glmnet 4.1-8
glue 1.3.0
glue 1.6.2
googledrive 2.1.1
googlesheets4 1.1.1
gplots 3.1.3
grDevices 3.5.2
grDevices 4.3.1
graph 1.78.0
graphics 3.5.2
graphics 4.3.1
graphlayouts 1.0.0
grid 3.5.2
grid 4.3.1
gridExtra 2.3
gridGraphics 0.5-1
gsl 1.9-10.3
gson 0.1.0
gtable 0.3.4
gtools 3.9.4
haven 2.5.3
hierarchy 0.0-0
highr 0.10
highr 0.7
hms 0.4.2
hms 1.1.3
htmlTable 2.4.1
htmltools 0.3.6
htmltools 0.5.6
htmlwidgets 1.3
htmlwidgets 1.6.2
httpuv 1.4.5.1
httpuv 1.6.11
httr2 0.2.3
httr 1.4.0
httr 1.4.7
hwriter 1.3.2.1
ids 1.0.1
igraph 1.5.1
ini 0.3.1
interp 1.1-4
invalidpkg 1.0.0
isoband 0.2.7
iterators 1.0.14
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.6
jsonlite 1.8.7
knitr 1.21
knitr 1.43
labeling 0.4.3
lambda.r 1.2.4
later 0.7.5
later 1.3.1
lattice 0.20-38
lattice 0.21-8
latticeExtra 0.6-30
lazyeval 0.2.1
lazyeval 0.2.2
lifecycle 1.0.3
limma 3.56.2
littler 0.3.6
lme4 1.1-34
locfit 1.5-9.8
lubridate 1.7.4
lubridate 1.9.2
magick 2.7.5
magrittr 1.5
magrittr 2.0.3
marge 0.0.4.9999
markdown 0.9
matrixStats 1.0.0
memoise 1.1.0
memoise 2.0.1
methods 3.5.2
methods 4.3.1
mgcv 1.8-27
mgcv 1.8-42
mime 0.12
mime 0.6
miniUI 0.1.1.1
minqa 1.2.5
mockery 0.4.1.1
mockr 0.1
modelr 0.1.11
msigdbr 7.5.1
multcomp 1.4-25
multtest 2.56.0
munsell 0.5.0
mvtnorm 1.2-3
mvtnormAPI 1.0-0
nlme 3.1-137
nlme 3.1-162
nloptr 2.0.3
nnet 7.3-12
nnet 7.3-19
noremotes 1.0.0
numDeriv 2016.8-1.1
openssl 1.2.2
openssl 2.1.0
org.Bt.eg.db 3.17.0
org.Ce.eg.db 3.17.0
org.Cf.eg.db 3.17.0
org.Dm.eg.db 3.17.0
org.Dr.eg.db 3.17.0
org.Gg.eg.db 3.17.0
org.Hs.eg.db 3.17.0
org.Mm.eg.db 3.17.0
org.Mmu.eg.db 3.17.0
org.Pt.eg.db 3.17.0
org.Rn.eg.db 3.17.0
org.Xl.eg.db 3.17.0
org.testing.db 0.1
parallel 3.5.2
parallel 4.3.1
patchwork 1.1.3
pbkrtest 0.5.2
pdftools 3.3.3
pillar 1.3.1
pillar 1.9.0
pkgKitten 0.1.4
pkgbuild 1.0.2
pkgbuild 1.4.2
pkgconfig 2.0.2
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.0.2
pkgload 1.3.2.1
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plotly 4.10.2
plotmics 7.0.1
plotrix 3.8-2
plyr 1.8.8
plyranges 1.20.0
png 0.1-7
png 0.1-8
polyclip 1.10-4
polynom 1.4-1
praise 1.0.0
preprocessCore 1.62.1
prettycode 1.0.2
prettyunits 1.0.2
prettyunits 1.1.1
processx 3.2.1
processx 3.8.2
profvis 0.3.8
progress 1.2.0
progress 1.2.2
progresstest 1.0.0
promises 1.0.1
promises 1.2.1
ps 1.3.0
ps 1.7.5
purrr 0.3.0
purrr 1.0.2
qpdf 1.3.2
quantreg 5.97
qvalue 2.32.0
rGREAT 2.2.0
ragg 1.2.5
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rcmdcheck 1.3.2
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regioneR 1.32.0
rematch2 2.1.2
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remotes 2.0.2
remotes 2.4.2.1
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reshape2 1.4.4
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rjson 0.2.21
rlang 0.3.1
rlang 1.1.1
rlanglibtest 0.0.0.9000
rmarkdown 1.11
rmarkdown 2.24
roxygen2 6.1.1
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rpart 4.1.19
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rvest 1.0.3
sandwich 3.0-2
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scales 1.2.1
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selectr 0.4-1
selectr 0.4-2
sessioninfo 1.1.1
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shape 1.4.6
shiny 1.2.0
shiny 1.7.5
shinyBS 0.61.1
shinyjs 2.1.0
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sp 1.3-1
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splines 3.5.2
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stats 4.3.1
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survival 2.43-3
survival 3.5-5
sys 2.1
sys 3.4.2
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tcltk 3.5.2
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testCollateAbsent 0.1
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bash 5.0.3
node 16.18.1
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js-tokens 4.0.0
js-yaml 3.14.1
js-yaml 4.1.0
jsbn 1.1.0
json-parse-even-better-errors 2.3.1
json-schema-traverse 0.4.1
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json-stringify-nice 1.1.4
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npm-profile 6.2.1
npm-registry-fetch 13.3.1
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npm 8.19.2
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object-inspect 1.12.2
on-finished 2.3.0
on-finished 2.4.1
on-headers 1.0.2
once 1.4.0
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optionator 0.9.1
p-limit 3.1.0
p-locate 5.0.0
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parseurl 1.3.3
path-exists 4.0.0
path-is-absolute 1.0.1
path-key 3.1.1
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pause 0.1.0
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postcss-selector-parser 6.0.10
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proc-log 2.0.1
progress 2.0.3
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readable-stream 3.6.0
readdir-scoped-modules 1.1.0
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regexpp 3.2.0
require-directory 2.1.1
require-from-string 2.0.2
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rimraf 3.0.2
safe-buffer 5.1.2
safe-buffer 5.2.1
safer-buffer 2.1.2
semver 7.3.7
send 0.18.0
serialize-javascript 6.0.0
serve-static 1.15.0
set-blocking 2.0.0
setprototypeof 1.2.0
shebang-command 2.0.0
shebang-regex 3.0.0
shiny-server-client 1.2.0
shiny-server 1.5.20
should-equal 2.0.0
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should-type-adaptors 1.1.0
should-type 1.4.0
should-util 1.0.1
should 13.2.3
side-channel 1.0.4
signal-exit 3.0.7
sinon 15.0.0
slice-ansi 4.0.0
smart-buffer 4.2.0
sockjs-client 1.5.2
sockjs 0.3.24
socks-proxy-agent 7.0.0
socks 2.7.0
source-map 0.6.1
spdx-correct 3.1.1
spdx-exceptions 2.3.0
spdx-expression-parse 3.0.1
spdx-license-ids 3.0.11
split 1.0.1
sprintf-js 1.0.3
sprintf-js 1.1.2
ssri 9.0.1
stable 0.1.8
statuses 2.0.1
streamroller 3.1.3
string-width 4.2.3
string_decoder 1.3.0
strip-ansi 6.0.1
strip-json-comments 3.1.1
supports-color 5.5.0
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table 6.8.0
tar 6.1.11
text-table 0.2.0
through 2.3.8
tiny-relative-date 1.3.0
to-regex-range 5.0.1
toidentifier 1.0.1
treeverse 2.0.0
type-check 0.4.0
type-detect 4.0.8
type-fest 0.20.2
type-is 1.6.18
typescript 4.9.3
underscore 1.13.6
unique-filename 2.0.1
unique-slug 3.0.0
universalify 0.1.2
unpipe 1.0.0
uri-js 4.4.1
url-parse 1.5.10
util-deprecate 1.0.2
utils-merge 1.0.1
uuid 8.3.2
v8-compile-cache 2.3.0
validate-npm-package-license 3.0.4
validate-npm-package-name 4.0.0
vary 1.1.2
walk-up-path 1.0.0
wcwidth 1.0.1
websocket-driver 0.7.4
websocket-extensions 0.1.4
which 2.0.2
wide-align 1.1.5
word-wrap 1.2.3
wordwrap 0.0.3
wordwrap 1.0.0
workerpool 6.2.1
wrap-ansi 7.0.0
wrappy 1.0.2
write-file-atomic 4.0.2
y18n 5.0.8
yallist 4.0.0
yargs-parser 20.2.4
yargs-unparser 2.0.0
yargs 16.2.0
yocto-queue 0.1.0

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