Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

brianyee/rnaseq : snakemake_1.0.0

Ubuntu 20.04.4 LTS

Latest release: over 1 year ago - 38 downloads - 2,387 dependencies

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.56.2
BH 1.81.0-1
Biobase 2.54.0
BiocFileCache 2.2.0
BiocGenerics 0.40.0
BiocIO 1.4.0
BiocManager 1.30.20
BiocParallel 1.28.3
BiocVersion 3.14.0
Biostrings 2.62.0
Cairo 1.6-0
DBI 1.1.2
DESeq2 1.34.0
DT 0.22
DelayedArray 0.20.0
DiceDesign 1.9
EnhancedVolcano 1.12.0
Formula 1.2-5
GPfit 1.0-8
GenomeInfoDb 1.30.1
GenomeInfoDbData 1.2.7
GenomicAlignments 1.30.0
GenomicFeatures 1.46.1
GenomicRanges 1.46.1
Hmisc 5.1-0
IRanges 2.28.0
IRdisplay 1.1
IRkernel 1.3
KEGGREST 1.34.0
KernSmooth 2.23-20
MASS 7.3-57
Matrix 1.4-1
MatrixGenerics 1.6.0
ModelMetrics 1.2.2.2
NOISeq 2.38.0
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.6
RODBC 1.3-19
RSQLite 2.2.8
Rcpp 1.0.8.3
RcppArmadillo 0.11.0.0.0
RcppEigen 0.3.3.9.3
RcppNumerical 0.5-0
Rhtslib 1.26.0
Rsamtools 2.10.0
Rttf2pt1 1.3.12
S4Vectors 0.32.4
SQUAREM 2021.1
SummarizedExperiment 1.24.0
TTR 0.24.3
XML 3.99-0.14
XVector 0.34.0
annotate 1.72.0
apeglm 1.16.0
ash 1.0-15
ashr 2.2-54
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.1.3
bbmle 1.0.25
bdsmatrix 1.3-6
beeswarm 0.4.0
biomaRt 2.50.0
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.3
boot 1.3-28.1
brew 1.0-7
brio 1.1.3
broom 0.8.0
bslib 0.3.1
caTools 1.18.2
cachem 1.0.6
callr 3.7.0
caret 6.0-92
cellranger 1.1.0
checkmate 2.2.0
chron 2.3-61
class 7.3-20
cli 3.3.0
clipr 0.8.0
cluster 2.1.4
coda 0.19-4
codetools 0.2-18
colorspace 2.0-3
commonmark 1.8.0
compiler 4.1.3
conflicted 1.1.0
covr 3.5.1
cpp11 0.4.2
crayon 1.5.1
credentials 1.3.2
crosstalk 1.2.0
curl 4.3.2
data.table 1.14.2
datasets 4.1.3
dbplyr 2.1.1
deldir 1.0-9
desc 1.4.1
devtools 2.4.3
dials 0.1.1
diffobj 0.3.5
digest 0.6.29
dplyr 1.0.9
dtplyr 1.2.1
e1071 1.7-9
edgeR 3.36.0
ellipsis 0.3.2
emdbook 1.3.12
etrunct 0.1
evaluate 0.15
extrafont 0.18
extrafontdb 1.0
fansi 1.0.3
farver 2.1.0
fastmap 1.1.0
filelock 1.0.2
fontawesome 0.2.2
forcats 0.5.1
foreach 1.5.2
forecast 8.16
foreign 0.8-84
formatR 1.14
fracdiff 1.5-1
fs 1.5.2
furrr 0.3.0
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.9.0
future 1.25.0
gargle 1.2.0
genefilter 1.76.0
geneplotter 1.72.0
generics 0.1.2
gert 1.5.0
getopt 1.20.3
ggalt 0.4.0
ggbeeswarm 0.7.2
ggplot2 3.3.6
ggrastr 1.0.1
ggrepel 0.9.3
gh 1.3.0
git2r 0.30.1
gitcreds 0.1.1
globals 0.14.0
glue 1.6.2
googledrive 2.0.0
googlesheets4 1.0.0
gower 1.0.0
gplots 3.1.3
grDevices 4.1.3
graphics 4.1.3
grid 4.1.3
gridExtra 2.3
gsubfn 0.7
gtable 0.3.0
gtools 3.9.4
hardhat 0.2.0
hash 3.0.1
haven 2.5.2
heatmap.plus 1.3
hexbin 1.28.2
highr 0.9
hms 1.1.1
htmlTable 2.4.1
htmltools 0.5.2
htmlwidgets 1.5.4
httpuv 1.6.5
httr 1.4.3
ids 1.0.1
infer 1.0.0
ini 0.3.1
interp 1.1-4
invgamma 1.1
ipred 0.9-12
irlba 2.3.5.1
isoband 0.2.5
iterators 1.0.14
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.8.0
knitr 1.39
labeling 0.4.2
lambda.r 1.2.4
later 1.2.0
lattice 0.20-45
latticeExtra 0.6-30
lava 1.6.10
lazyeval 0.2.2
lhs 1.1.5
lifecycle 1.0.1
limma 3.50.3
linkXTS 1.0
listenv 0.8.0
lmtest 0.9-40
locfit 1.5-9.7
lubridate 1.8.0
magrittr 2.0.3
maps 3.4.1
matrixStats 0.63.0
memoise 2.0.1
methods 4.1.3
mgcv 1.8-40
mime 0.12
mixsqp 0.3-48
modeldata 0.1.1
modelr 0.1.8
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
mygene 1.30.0
nlme 3.1-157
nnet 7.3-17
numDeriv 2016.8-1.1
nycflights13 1.0.2
openssl 2.0.0
optparse 1.7.3
org.testing.db 0.1
pROC 1.18.0
parallel 4.1.3
parallelly 1.31.1
parsnip 0.2.1
patchwork 1.1.1
pbdZMQ 0.3-7
pillar 1.7.0
pkgbuild 1.3.1
pkgconfig 2.0.3
pkgload 1.2.4
plogr 0.2.0
plotly 4.10.1
plotscale 0.1.6
plyr 1.8.7
png 0.1-8
praise 1.0.0
prettyunits 1.1.1
processx 3.5.3
prodlim 2019.11.13
progress 1.2.2
progressr 0.10.0
proj4 1.0-12
promises 1.2.0.1
proto 1.0.0
proxy 0.4-26
ps 1.7.0
purrr 0.3.4
quadprog 1.5-8
quantmod 0.4.20
ragg 1.2.4
randomForest 4.6-14
rappdirs 0.3.3
rcmdcheck 1.4.0
readr 2.1.2
readxl 1.4.2
recipes 0.2.0
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
repr 1.1.4
reprex 2.0.1
reshape2 1.4.4
restfulr 0.0.15
rex 1.2.1
rjson 0.2.21
rlang 1.0.2
rmarkdown 2.14
roxygen2 7.1.2
rpart 4.1.16
rprojroot 2.0.3
rsample 0.1.1
rstudioapi 0.13
rtracklayer 1.54.0
rversions 2.1.1
rvest 1.0.2
sass 0.4.1
scales 1.2.0
selectr 0.4-2
sessioninfo 1.2.2
shiny 1.7.1
slider 0.2.2
snow 0.4-4
sourcetools 0.1.7
spatial 7.3-16
splines 4.1.3
sqldf 0.4-11
statmod 1.5.0
stats4 4.1.3
stats 4.1.3
stringi 1.7.6
stringr 1.4.0
survival 3.3-1
sys 3.4
systemfonts 1.0.4
tcltk 4.1.3
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.4
textshaping 0.3.6
tibble 3.1.7
tidymodels 0.2.0
tidyr 1.2.0
tidyselect 1.1.2
tidyverse 1.3.1
timeDate 3043.102
tinytex 0.38
tools 4.1.3
translations 4.1.3
truncnorm 1.0-9
tseries 0.10-51
tune 0.2.0
tximport 1.22.0
tzdb 0.3.0
urca 1.3-0
usethis 2.1.5
utf8 1.2.2
utils 4.1.3
uuid 1.1-0
vctrs 0.4.1
vipor 0.4.5
viridis 0.6.3
viridisLite 0.4.0
vroom 1.5.7
waldo 0.4.0
warp 0.2.0
whisker 0.4
withr 2.5.0
workflows 0.2.6
workflowsets 0.2.1
xfun 0.30
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
xts 0.12.1
yaml 2.3.5
yardstick 0.0.9
zip 2.2.0
zlibbioc 1.40.0
zoo 1.8-10

bash 5.0.17
java 11.0.1-internal 0-adhoc..src
python 2.7.18
python 3.8.10
python 3.9.12

Babel 2.10.1
Bottleneck 1.3.4
ConfigArgParse 1.5.3
Cython 0.29.28
GitPython 3.1.31
HTSeq 2.0.3
HeapDict 1.0.1
Jinja2 3.1.1
Mako 1.2.0
Markdown 3.4.3
MarkupSafe 2.1.1
Pillow 7.0.0
Pillow 9.2.0
PuLP 2.7.0
PyGObject 3.36.0
PyJWT 1.7.1
PyJWT 2.3.0
PyNaCl 1.3.0
PyNaCl 1.5.0
PySocks 1.7.1
PyWavelets 1.3.0
PyYAML 6.0
Pygments 2.15.1
SQLAlchemy 1.4.36
SecretStorage 2.3.1
Send2Trash 1.8.0
aioeasywebdav 2.4.0
aiohttp 3.8.4
aiosignal 1.3.1
alembic 1.7.7
altair 4.2.0
amply 0.1.5
anyio 3.5.0
appdirs 1.4.4
argon2-cffi-bindings 21.2.0
argon2-cffi 21.3.0
argparse 1.2.1
asttokens 2.0.5
async-generator 1.10
async-timeout 4.0.2
attmap 0.13.2
attrs 21.4.0
backcall 0.2.0
backports.functools-lru-cache 1.6.4
bcrypt 3.2.2
beautifulsoup4 4.11.1
bleach 5.0.0
blinker 1.4
bokeh 2.4.2
boto3 1.26.139
botocore 1.29.139
brotlipy 0.7.0
bytecode 0.13.0.dev0
cached-property 1.5.2
cachetools 5.3.0
certifi 2019.11.28
certifi 2023.5.7
certipy 0.1.3
cffi 1.15.0
chardet 3.0.4
charset-normalizer 2.0.12
click 8.1.3
cloudpickle 2.0.0
colorama 0.4.4
coloredlogs 15.0.1
colormath 3.0.0
conda-package-handling 1.8.1
conda 4.12.0
connection-pool 0.0.3
coverage 5.5
cryptography 2.8
cryptography 36.0.2
cupshelpers 1.0
cutadapt 4.4
cycler 0.10.0
cycler 0.11.0
cytoolz 0.11.2
dask 2022.5.0
datrie 0.8.2
dbus-python 1.2.16
debugpy 1.6.0
decorator 4.4.2
decorator 5.1.1
defer 1.0.6
defusedxml 0.7.1
dill 0.3.4
distributed 2022.5.0
distro 1.4.0
dnaio 0.10.0
docutils 0.20.1
dpath 2.1.6
dropbox 11.36.0
entrypoints 0.3
entrypoints 0.4
exceptiongroup 1.1.1
executing 0.8.3
fastjsonschema 2.15.3
filechunkio 1.8
filelock 3.12.0
flit_core 3.7.1
fonttools 4.33.3
frozenlist 1.3.3
fsspec 2022.3.0
ftputil 5.0.4
future 0.18.3
gitdb 4.0.10
gmpy2 2.1.2
google-api-core 2.10.0
google-api-python-client 2.86.0
google-auth-httplib2 0.1.0
google-auth 2.18.1
google-cloud-core 2.3.2
google-cloud-storage 2.9.0
google-crc32c 1.1.2
google-resumable-media 2.5.0
googleapis-common-protos 1.57.0
greenlet 1.1.2
grpcio 1.46.3
h5py 3.6.0
html5lib 1.1
httplib2 0.14.0
httplib2 0.22.0
humanfriendly 10.0
idna 2.8
idna 3.3
imagecodecs 2022.8.8
imageio 2.19.0
importlib-metadata 4.11.3
importlib-resources 5.7.1
iniconfig 2.0.0
ipykernel 6.13.0
ipympl 0.9.1
ipython-genutils 0.2.0
ipython 8.3.0
ipywidgets 7.7.0
isal 1.1.0
jedi 0.18.1
jmespath 1.0.1
joblib 1.1.0
json5 0.9.5
jsonschema 4.4.0
jupyter-client 7.3.0
jupyter-core 4.9.2
jupyter-server 1.17.0
jupyter-telemetry 0.1.0
jupyterhub 2.2.2
jupyterlab-pygments 0.2.2
jupyterlab-server 2.13.0
jupyterlab-widgets 1.1.0
jupyterlab 3.4.0
keyring 18.0.1
kiwisolver 1.0.1
kiwisolver 1.4.2
language-selector 0.1
launchpadlib 1.10.13
lazr.restfulclient 0.14.2
lazr.uri 1.0.3
libmambapy 1.1.0
llvmlite 0.38.0
locket 1.0.0
logmuse 0.2.6
lz4 4.0.0
lzstring 1.0.4
macaroonbakery 1.3.1
mamba 1.1.0
markdown-it-py 2.2.0
matplotlib-inline 0.1.3
matplotlib 3.1.2
matplotlib 3.5.2
mdurl 0.1.0
mistune 0.8.4
mpmath 1.2.1
msgpack 1.0.3
multidict 6.0.4
multiqc 1.14
munkres 1.1.4
mypy 0.902
nbclassic 0.3.7
nbclient 0.6.2
nbconvert 6.5.0
nbformat 5.4.0
nest-asyncio 1.5.5
networkx 2.8
notebook-shim 0.1.0
notebook 6.4.11
numba 0.55.1
numexpr 2.8.0
numpy 1.17.4
numpy 1.21.6
oauth2client 4.1.3
oauthlib 3.1.0
oauthlib 3.2.0
olefile 0.46
packaging 21.3
pamela 1.0.0
pandas 1.4.2
pandocfilters 1.5.0
paramiko 3.1.0
parso 0.8.3
partd 1.2.0
patsy 0.5.2
peppy 0.35.5
pexpect 4.8.0
pickleshare 0.7.5
pip 22.0.4
plac 1.3.5
pluggy 1.0.0
ply 3.11
prettytable 3.7.0
prometheus-client 0.14.1
prompt-toolkit 3.0.29
protobuf 3.20.0rc2
protobuf 3.6.1
psutil 5.9.0
ptyprocess 0.7.0
pure-eval 0.2.2
pyOpenSSL 22.0.0
pyRFC3339 1.1
pyasn1-modules 0.2.7
pyasn1 0.4.8
pycairo 1.16.2
pycosat 0.6.3
pycparser 2.21
pycups 1.9.73
pycurl 7.45.1
pymacaroons 0.13.0
pyparsing 2.4.6
pyparsing 3.0.8
pyrsistent 0.18.1
pysam 0.20.0
pysftp 0.2.9
pytest 7.3.1
python-apt 2.0.1 ubuntu0.20.4.1
python-dateutil 2.7.3
python-dateutil 2.8.2
python-irodsclient 1.1.8
python-json-logger 2.0.1
pytz-deprecation-shim 0.1.0.post0
pytz 2019.3
pytz 2022.1
pyu2f 0.1.5
pyzmq 22.3.0
requests-unixsocket 0.2.0
requests 2.22.0
requests 2.27.1
reretry 0.11.8
rich-click 1.6.1
rich 13.3.5
rpy2 3.5.1
rsa 4.9
ruamel-yaml-conda 0.15.80
ruamel.yaml.clib 0.2.6
ruamel.yaml 0.17.21
s3transfer 0.6.1
scikit-image 0.19.2
scikit-learn 1.0.2
scipy 1.3.3
scipy 1.8.0
seaborn 0.11.2
setuptools 62.1.0
simplegeneric 0.8.1
simplejson 3.16.0
simplejson 3.19.1
sip 4.19.21
six 1.14.0
six 1.16.0
slacker 0.14.0
smart-open 6.3.0
smmap 3.0.5
snakemake 7.26.0
sniffio 1.2.0
sortedcontainers 2.4.0
soupsieve 2.3.1
spectra 0.0.11
stack-data 0.2.0
statsmodels 0.13.2
stone 3.3.1
stopit 1.1.2
sympy 1.10.1
systemd-python 234
tables 3.7.0
tabulate 0.9.0
tblib 1.7.0
terminado 0.13.3
threadpoolctl 3.1.0
throttler 1.2.1
tifffile 2022.5.4
tinycss2 1.1.1
tomli 1.2.3
tomli 2.0.1
toolz 0.11.2
toposort 1.10
tornado 6.1
tqdm 4.64.0
traitlets 5.1.1
typing_extensions 4.2.0
tzdata 2022.1
tzlocal 4.2
ubiquerg 0.6.2
unicodedata2 14.0.0
uritemplate 4.1.1
urllib3 1.25.8
urllib3 1.26.9
veracitools 0.1.3
wadllib 1.3.3
wcwidth 0.2.5
webencodings 0.5.1
websocket-client 1.3.2
wheel 0.37.1
widgetsnbextension 3.6.0
wrapt 1.15.0
wsgiref 0.1.2
wxPython 4.0.7
xlrd 2.0.1
xopen 1.7.0
yarl 1.9.1
yte 1.5.1
zict 2.2.0
zipp 3.8.0
zstandard 0.19.0