Data

Tools

Indexes

Applications

Experiments

Docker

An open API service providing dependency metadata for docker images.

Package Usage : maven : htsjdk:htsjdk

Explore the latest package usage data for htsjdk:htsjdk in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 150
Total downloads: 42,831,238
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

broadinstitute/picard 3.3.0

A set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats.

  • version: 3.0.1, 3.0.5
Latest release: over 1 year ago - 1,241,685 downloads - 640 dependencies
ocdr/ds-apps 1.0.43

  • version: 2.24.1
Latest release: about 2 years ago - 3,932 downloads - 3,778 dependencies
dmiller15/vardictjava 1.7.0

  • version: 2.8.0
Latest release: about 3 years ago - 190 downloads - 525 dependencies
steepale/picard_tools 2.27.5

  • version: 3.0.1
Latest release: about 3 years ago - 26 downloads - 693 dependencies
dhspence/docker-skewer latest

base image with skewer for read trimming

  • version: 2.11.0
Latest release: over 7 years ago - 100 downloads - 279 dependencies
evolomicsmbbt/rna_seq latest

  • version: 2.24.1
Latest release: about 3 years ago - 162 downloads - 412 dependencies
kentwait/gatk latest

Dockerized GATK for genomics analysis

  • version: 2.7.0, 2.8.1
Latest release: almost 9 years ago - 83 downloads - 371 dependencies
y9ch/bidseq rice

🧪 BID-seq for detecting pseudouridine modification on RNA

  • version: 2.19.0
Latest release: almost 3 years ago - 1,604 downloads - 251 dependencies
dmiller15/annotsv 3.1.1

  • version: 2.18.2
Latest release: about 4 years ago - 34 downloads - 284 dependencies
bryoinformatics/rna-seq v1.0.0

A container for the RNAseq pipeline (https://github.com/bryoinformatics/RNAseq).

  • version: 2.24.1-SNAPSHOT
Latest release: almost 3 years ago - 160 downloads - 188 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 2.21.1, 2.8.0
Latest release: about 3 years ago - 131 downloads - 1,081 dependencies
shahcompbio/igver latest

  • version: 3.0.0
Latest release: almost 3 years ago - 349 downloads - 258 dependencies
dhspence/docker-minimap2 111621

  • version: 2.11.0
Latest release: over 4 years ago - 229 downloads - 734 dependencies
ctomlins/picardtools latest

  • version: 3.0.1
Latest release: over 2 years ago - 330 downloads - 883 dependencies
fischbachlab/nf-miti-projects latest

  • version: 2.24.1-SNAPSHOT
Latest release: almost 3 years ago - 205 downloads - 264 dependencies
cjchen/tbtoolszone 2.0

  • version: 2.24.1
Latest release: almost 3 years ago - 141 downloads - 789 dependencies
jyesselm/rna-map latest

  • version: 2.23.0
Latest release: about 3 years ago - 51 downloads - 551 dependencies
dhspence/docker-manta 1.5.0

  • version: 2.16.0
Latest release: about 7 years ago - 233 downloads - 1,191 dependencies
trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

  • version: 2.8.1
Latest release: almost 5 years ago - 188 downloads - 805 dependencies
vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

  • version: 2.23.0
Latest release: about 3 years ago - 93,809 downloads - 1,101 dependencies
etycksen/dragen4 4.2.4

  • version: 1.136
Latest release: over 2 years ago - 397 downloads - 735 dependencies
broadinstitute/gatk-test 4.0-prerelease-1efafd2b5

  • version: 2.13.2
Latest release: about 8 years ago - 105 downloads - 1,213 dependencies
qdidiscoveryservices/gatk-v2461_bwa_vardict latest

  • version: 2.21.1, 2.8.0
Latest release: almost 3 years ago - 15 downloads - 1,069 dependencies
yuyanying/conda_preprocess latest

  • version: 2.24.1-SNAPSHOT
Latest release: over 2 years ago - 63,269 downloads - 222 dependencies
bryoinformatics/variant-id v1.0.0

A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).

  • version: 2.24.1-SNAPSHOT
Latest release: almost 3 years ago - 108 downloads - 479 dependencies
anniewangly/large_deletion latest

  • version: 2.21.1
Latest release: about 3 years ago - 73 downloads - 184 dependencies
carlokroll/exomiser-cli 13.2.0

  • version: 2.24.1
Latest release: about 3 years ago - 68 downloads - 75 dependencies
dhspence/docker-demux latest

  • version: 2.11.0
Latest release: over 5 years ago - 43 downloads - 295 dependencies
dhspence/docker-genomic-analysis-lite 102321

  • version: 2.21.0
Latest release: over 4 years ago - 66 downloads - 397 dependencies
qdidiscoveryservices/lightspeed-clcworkflowengine latest

  • version: 2.24.1
Latest release: about 3 years ago - 28 downloads - 149 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 2.24.1-SNAPSHOT
Latest release: almost 3 years ago - 67 downloads - 2,387 dependencies
mrkevindc/umis latest

  • version: 2.21.1, 2.24.1-26-ga38c78d-SNAPSHOT
Latest release: almost 3 years ago - 61 downloads - 373 dependencies
lucifer001/javasarala-dev-ab123 latest

  • version: 2.24.1
Latest release: about 3 years ago - 47 downloads - 2,047 dependencies
dabbleofdevops/nextneopi 20230817

  • version: 2.24.1-SNAPSHOT
Latest release: over 2 years ago - 136 downloads - 499 dependencies
hremon331046/neoantigen-vaccine-pipeline nf-pipeline

  • version: 2.24.1-SNAPSHOT
Latest release: almost 2 years ago - 193 downloads - 436 dependencies
aminhaghparast/genomics21 2.12

  • version: 2.18.2
Latest release: about 3 years ago - 12 downloads - 522 dependencies
taniguti/picard 3.0.0

  • version: 3.0.1
Latest release: almost 3 years ago - 36 downloads - 897 dependencies
nanjiang/apollo latest

  • version: 2.23.0
Latest release: almost 3 years ago - 98 downloads - 695 dependencies
dhspence/docker-hiccompare latest

  • version: 2.16.0
Latest release: almost 5 years ago - 137 downloads - 1,271 dependencies
lucifer001/javasarala-be-test latest

  • version: 2.24.1
Latest release: about 3 years ago - 23 downloads - 2,047 dependencies
preethiilumina/dragen-bluebee 1.0.3

  • version: 1.136
Latest release: over 2 years ago - 102 downloads - 815 dependencies
robertbio/wf latest

  • version: 2.24.1-SNAPSHOT
Latest release: over 2 years ago - 106 downloads - 332 dependencies
gene110/vep_filter v07

  • version: 2.8.1
Latest release: over 4 years ago - 10 downloads - 1,164 dependencies
lucifer001/sachakala-be-qwertyuiop latest

  • version: 2.24.1
Latest release: about 3 years ago - 49 downloads - 2,927 dependencies
elitemao/starsamtoolspicard 1.0

  • version: 2.3.0
Latest release: about 3 years ago - 20 downloads - 401 dependencies
bioinformaticsmusc/biocm-cli 1.0.13

  • version: 2.24.1-SNAPSHOT
Latest release: about 2 years ago - 197 downloads - 408 dependencies
prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

  • version: 2.24.1
Latest release: about 3 years ago - 116 downloads - 1,382 dependencies
intelliseqngs/task_vcf-anno-scores 1.2.1-chrY-and-the-rest

  • version: 3.0.4
Latest release: about 3 years ago - 68,203 downloads - 633 dependencies
lucifer001/sachakala-be-test-109-101 latest

  • version: 2.24.1
Latest release: about 3 years ago - 36 downloads - 2,461 dependencies
lucifer001/sachakala-ui-test3333 latest

  • version: 2.24.1
Latest release: about 3 years ago - 53 downloads - 2,924 dependencies
lucifer001/javasarala-be-test1101 latest

  • version: 2.24.1
Latest release: about 3 years ago - 18 downloads - 2,511 dependencies
lesbiangreat/bioinfor_dev v0.64

  • version: 2.24.1-SNAPSHOT
Latest release: over 2 years ago - 108 downloads - 3,779 dependencies
yunagaoka/ubuntu22.04 0.1.2

  • version: 2.24.1-SNAPSHOT
Latest release: over 2 years ago - 26 downloads - 1,139 dependencies
lucifer001/asarda-qa-test1234 02-22-23-12-16-56

  • version: 2.24.1
Latest release: about 3 years ago - 20 downloads - 3,106 dependencies
jieliu4wustl/wustl hisat3n

  • version: 2.18.2
Latest release: about 2 years ago - 5,704 downloads - 1,124 dependencies
bioxfu/ddngs latest

  • version: 2.24.1-SNAPSHOT
Latest release: almost 3 years ago - 44 downloads - 1,055 dependencies
wyangwu/r4.1.2 latest

  • version: 2.18.2
Latest release: over 2 years ago - 93 downloads - 827 dependencies
amirshams/spipe 1.0.7

  • version: 2.23.0
Latest release: almost 3 years ago - 26 downloads - 594 dependencies
omicsclass/pan-genome v1.0

  • version: 2.24.1-SNAPSHOT
Latest release: almost 3 years ago - 237 downloads - 3,108 dependencies
mrkevindc/add latest

  • version: 3.0.1
Latest release: about 3 years ago - 35 downloads - 621 dependencies
lucifer001/sachakala-be-filebrowsertest latest

  • version: 2.24.1
Latest release: about 3 years ago - 47 downloads - 2,715 dependencies
qtulab/miniencode latest

  • version: 2.24.1
Latest release: over 2 years ago - 217 downloads - 4,269 dependencies
shaodongwei/metagenomics v2

  • version: 2.24.1-SNAPSHOT
Latest release: over 2 years ago - 87 downloads - 1,186 dependencies
lazzarigioele/edacicola latest

  • version: 2.24.1-SNAPSHOT
Latest release: about 3 years ago - 31 downloads - 3,533 dependencies
npcooley/nmdctest01 1.0

  • version: 2.24.1-SNAPSHOT
Latest release: over 2 years ago - 32 downloads - 919 dependencies
jysgro/fastqc ub2306_12.1

fastqc 12.1 under Ubuntu 23.04

  • version: 2.24.1-SNAPSHOT
Latest release: almost 3 years ago - 63 downloads - 403 dependencies
benpasto/hyb latest

  • version: 2.23.0
Latest release: over 2 years ago - 59 downloads - 568 dependencies
danhumassmed/picard-trimmomatic 1.0.2

Software for Bioinformatics pipelines Picard & Trimmomatic

  • version: 2.24.1-SNAPSHOT
Latest release: about 1 year ago - 60 downloads - 184 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 2.21.0
Latest release: about 4 years ago - 20,285 downloads - 1,294 dependencies
toniher/testwave 5d7e95fdc1ccd27e

  • version: 2.24.1-SNAPSHOT
Latest release: over 2 years ago - 46 downloads - 103 dependencies
opencb/opencga-init 3.1.0

An image to manipulate OpenCGA configuration files with overrides

  • version: 2.23.0
Latest release: almost 2 years ago - 20,323 downloads - 1,200 dependencies
intelliseqngs/vcf-annotation scores-grch38_v0.2-chr19

  • version: 2.20.1
Latest release: about 6 years ago - 13,363 downloads - 531 dependencies
biocontainers/artemis v17.0.1dfsg-2-deb_cv1

  • version: 2.18.2
Latest release: over 6 years ago - 9,539 downloads - 887 dependencies
biocontainers/beagle v5.0-180928dfsg-1-deb_cv1

  • version: 2.18.2
Latest release: over 6 years ago - 9,497 downloads - 533 dependencies
biocontainers/unicycler v0.4.7dfsg-2-deb_cv1

  • version: 2.18.2
Latest release: over 6 years ago - 8,559 downloads - 703 dependencies
biocontainers/chromhmm v1.18dfsg-1-deb_cv1

  • version: 2.18.2
Latest release: over 6 years ago - 8,435 downloads - 587 dependencies
biocontainers/pilon v1.23dfsg-1-deb_cv1

  • version: 2.18.2
Latest release: over 6 years ago - 8,519 downloads - 469 dependencies
biocontainers/paleomix v1.2.13.3-1-deb_cv1

  • version: 2.18.2
Latest release: over 6 years ago - 7,525 downloads - 1,167 dependencies
biocontainers/surankco v0.0.r5dfsg-2-deb_cv1

  • version: 2.18.2
Latest release: over 6 years ago - 7,484 downloads - 857 dependencies
dhspence/docker-trimgalore latest

trimgalore, cutadapt, on top of docker-genomic-analysis

  • version: 2.11.0
Latest release: about 7 years ago - 3,656 downloads - 733 dependencies
dhspence/docker-amplicon-readcount latest

GATK plus custom annotation script

  • version: 2.4.1
Latest release: over 8 years ago - 3,684 downloads - 716 dependencies
dhspence/docker-spikein v1.1

  • version: 2.11.0
Latest release: over 7 years ago - 3,284 downloads - 729 dependencies
dhspence/docker-star latest

STAR plus helper script plus samtools

  • version: 2.11.0
Latest release: about 8 years ago - 2,001 downloads - 729 dependencies
dhspence/docker-haloplexqc latest

Haloplex QC scripts

  • version: 2.11.0
Latest release: about 8 years ago - 1,853 downloads - 730 dependencies
dhspence/docker-macs2 latest

  • version: 2.11.0
Latest release: over 7 years ago - 1,942 downloads - 730 dependencies
rpolicas/igv_xvfb 1.0.8

  • version: 3.0.0
Latest release: over 2 years ago - 130 downloads - 76 dependencies
joshuatobin257/align latest

  • version: 3.0.0
Latest release: over 2 years ago - 605 downloads - 377 dependencies
ctomlins/nanopore-rna-pipeline latest

  • version: 2.18.2
Latest release: over 4 years ago - 38 downloads - 717 dependencies
dhspence/docker-regtools latest

  • version: 2.11.0
Latest release: about 8 years ago - 1,226 downloads - 732 dependencies