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Package Usage : pypi : xopen

Explore the latest package usage data for xopen in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 71
Total downloads: 181,748

More details on packages.ecosyste.ms - JSON

broadinstitute/terra-jupyter-aou 2.1.13

  • version: 1.6.0
Latest release: over 2 years ago - 96,569 downloads - 4,112 dependencies
nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

  • version: 1.1.0
Latest release: 5 months ago - 48,015 downloads - 738 dependencies
genomicmedicinesweden/gms-artic-nanopore 0c599b9

  • version: 1.2.0
Latest release: almost 2 years ago - 3,175 downloads - 153 dependencies
dhspence/docker-smallrnaseq latest

  • version: 0.3.3
Latest release: about 7 years ago - 833 downloads - 911 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 1.4.0
Latest release: over 2 years ago - 403 downloads - 849 dependencies
y9ch/bidseq rice

🧪 BID-seq for detecting pseudouridine modification on RNA

  • version: 1.7.0
Latest release: over 2 years ago - 1,458 downloads - 251 dependencies
doejgi/synbioqc-dual_barcode 1.3.9

version of SynBioQC PacBio sequence validation pipeline for highly similar synthetic constructs

  • version: 1.0.1
Latest release: about 1 year ago - 967 downloads - 1,113 dependencies
ctomlins/testuniv_update latest

  • version: 0.8.2
Latest release: over 4 years ago - 161 downloads - 758 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 1.4.0
Latest release: over 2 years ago - 131 downloads - 1,081 dependencies
ctomlins/supernova v2.1.1

  • version: 0.3.2
Latest release: almost 7 years ago - 127 downloads - 297 dependencies
alexwaldrop/reads2variants v0.0

  • version: 1.7.0
Latest release: over 2 years ago - 128 downloads - 660 dependencies
felixschlesinger/scalerna bcparser_bam_out

  • version: 1.7.0
Latest release: over 1 year ago - 51,740 downloads - 241 dependencies
ctomlins/trim_galore latest

  • version: 0.8.4
Latest release: over 3 years ago - 87 downloads - 357 dependencies
ctomlins/testuniv latest

  • version: 0.8.2
Latest release: over 3 years ago - 84 downloads - 536 dependencies
onurcanbektas/axolotl.rulands.yun latest

  • version: 1.2.1
Latest release: over 2 years ago - 106 downloads - 459 dependencies
biocontainers/python3-cutadapt v1.12-2-deb_cv1

  • version: 0.1.1
Latest release: over 7 years ago - 63 downloads - 108 dependencies
ctomlins/supertellnova latest

  • version: 0.3.2
Latest release: over 4 years ago - 62 downloads - 309 dependencies
biocontainers/python-cutadapt v1.12-2-deb_cv1

  • version: 0.1.1
Latest release: over 7 years ago - 52 downloads - 109 dependencies
mbwali/jupyterlab qiime2023

  • version: 1.7.0
Latest release: about 2 years ago - 61 downloads - 1,941 dependencies
biocontainers/python-xopen v0.1.1-1-deb_cv1

  • version: 0.1.1
Latest release: over 7 years ago - 43 downloads - 107 dependencies
ctomlins/tellread_2022 latest

  • version: 0.8.2
Latest release: over 2 years ago - 44 downloads - 711 dependencies
ctomlins/bcl2fastq latest

  • version: 0.3.5
Latest release: about 4 years ago - 47 downloads - 474 dependencies
jpsmith5/peppro 0.10.2

  • version: 1.7.0
Latest release: over 2 years ago - 69 downloads - 1,163 dependencies
bryoinformatics/rna-seq v1.0.0

A container for the RNAseq pipeline (https://github.com/bryoinformatics/RNAseq).

  • version: 0.7.3, 1.6.0
Latest release: over 2 years ago - 150 downloads - 188 dependencies
tom418/kaist-ina-mutcall 2.0

  • version: 1.6.0, 1.0.1
Latest release: over 2 years ago - 69 downloads - 497 dependencies
biodancer/nasap_performance latest

write later

  • version: 1.4.0
Latest release: over 2 years ago - 83 downloads - 2,006 dependencies
qdidiscoveryservices/gatk-v2461_bwa_vardict latest

  • version: 1.4.0
Latest release: over 2 years ago - 15 downloads - 1,069 dependencies
bryoinformatics/variant-id v1.0.0

A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).

  • version: 1.6.0
Latest release: over 2 years ago - 102 downloads - 479 dependencies
aminhaghparast/genomics21 2.12

  • version: 0.5.0
Latest release: over 2 years ago - 12 downloads - 522 dependencies
fangjy6/base_env el4qa_latest

  • version: 1.1.0
Latest release: over 2 years ago - 249 downloads - 2,343 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: 1.7.0, 1.2.1
Latest release: about 2 years ago - 158 downloads - 571 dependencies
gesiscss/binder-mortonjt-2dq2stats-2dworkshops-912d21 82c8b562545acab37a854f097c33806fa7c2a4b3

  • version: 0.9.0
Latest release: over 4 years ago - 24 downloads - 1,679 dependencies
shiramaty/qiime2-sratools latest

  • version: 1.6.0
Latest release: over 2 years ago - 23 downloads - 319 dependencies
bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

  • version: 1.0.1
Latest release: 12 months ago - 39 downloads - 421 dependencies
djbradshaw2/trimgalore latest

  • version: 1.7.0
Latest release: over 2 years ago - 29 downloads - 56 dependencies
erictdawson/clair3 2023-Jul-05

  • version: 1.7.0
Latest release: about 2 years ago - 105 downloads - 112 dependencies
ctomlins/tseq latest

  • version: 0.8.2
Latest release: almost 5 years ago - 25 downloads - 536 dependencies
ctomlins/tseq_2 latest

  • version: 0.8.2
Latest release: almost 5 years ago - 24 downloads - 538 dependencies
snads/augur 21.1.0

  • version: 1.7.0
Latest release: over 2 years ago - 52 downloads - 45 dependencies
quiestrho/crabs 1.0.0

  • version: 1.2.1
Latest release: over 2 years ago - 18 downloads - 24 dependencies
sebimer/samba-v4-qiime2 2024.2

  • version: 1.7.0
Latest release: over 1 year ago - 117 downloads - 583 dependencies
dhspence/docker-longread latest

  • version: 1.7.0
Latest release: over 2 years ago - 33 downloads - 155 dependencies
emersonchao/dsc180b latest

  • version: 1.7.0
Latest release: over 2 years ago - 57 downloads - 2,266 dependencies
bixbeta/cluster_profiler v1

  • version: 1.0.1
Latest release: over 2 years ago - 17 downloads - 1,038 dependencies
sbouslama/sb-mpxv-nf alpha3

  • version: 1.2.0
Latest release: over 2 years ago - 294 downloads - 907 dependencies
ethill/qiime2 latest

docker container for qiime2

  • version: 1.7.0
Latest release: over 2 years ago - 18 downloads - 1,935 dependencies
xonq/funannotate latest

  • version: 1.7.0
Latest release: about 2 years ago - 47 downloads - 161 dependencies
repbioinfo/detectseq latest

  • version: 1.2.1, 1.5.0
Latest release: over 2 years ago - 57 downloads - 2,183 dependencies
ontresearch/wf-amplicon-clair3 mr135_shaa51744fee019e824a90b298551a447c733fe46f9

  • version: 1.7.0
Latest release: over 2 years ago - 23 downloads - 108 dependencies
crpeters/whatshap 1.7

  • version: 1.7.0
Latest release: over 2 years ago - 14 downloads - 26 dependencies
bixbeta/pavian v1

  • version: 1.0.1
Latest release: over 2 years ago - 14 downloads - 388 dependencies
yhhhy/match v8

  • version: 1.1.0
Latest release: over 2 years ago - 34 downloads - 703 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 1.7.0
Latest release: about 2 years ago - 56 downloads - 2,387 dependencies
ontresearch/wf-somatic-snp sha86599ecdb46472d01e0b7c2704683f6aee8a82dd

  • version: 1.7.0
Latest release: about 1 year ago - 7,449 downloads - 127 dependencies
hkubal/clairs v0.4.1

  • version: 1.7.0
Latest release: 8 months ago - 4,186 downloads - 150 dependencies
jorgeamaya/dada2_terra_iseq v1

  • version: 1.7.0
Latest release: almost 2 years ago - 392 downloads - 967 dependencies
salvacasani/trimming latest

  • version: 1.2.1
Latest release: about 2 years ago - 220 downloads - 238 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 1.7.0
Latest release: over 2 years ago - 176 downloads - 752 dependencies
ctomlins/cutadapt latest

  • version: 1.7.0
Latest release: almost 2 years ago - 127 downloads - 263 dependencies
shengqh/cqs_smallrnaseq 20240201

  • version: 1.7.0
Latest release: over 1 year ago - 398 downloads - 1,416 dependencies
globusgenomics/picrust 1.0

  • version: 1.5.0
Latest release: over 2 years ago - 129 downloads - 595 dependencies
andrewatmp/qiime_unzip latest

  • version: 1.7.0
Latest release: almost 2 years ago - 150 downloads - 598 dependencies
harshaldeokar/us_medgenome_v12 latest

  • version: 0.8.4
Latest release: about 2 years ago - 65 downloads - 2,611 dependencies
lorentzb/srs 2.0

  • version: 0.9.0
Latest release: over 2 years ago - 67 downloads - 269 dependencies
jlphillips/csci 2025-Spring-cu118

MTSU Department of Computer Science Stack

  • version: 1.7.0
Latest release: 4 months ago - 918 downloads - 3,721 dependencies
jorgeamaya/ci_barcode_terra_dada2_iseq v1

  • version: 1.7.0
Latest release: almost 2 years ago - 41 downloads - 483 dependencies
wyangwu/r4.1.2 latest

  • version: 0.8.4
Latest release: about 2 years ago - 93 downloads - 827 dependencies
gesiscss/binder-r2d-g5b5b759-blab-2dveme-2d2022-89866c dee2a5b0b557c148bec36ceae9a89ae7d0b2b87f

  • version: 1.7.0
Latest release: 10 months ago - 68 downloads - 1,250 dependencies
wilfriedguiblet/ctk v0.1

  • version: 1.7.0
Latest release: over 2 years ago - 89 downloads - 156 dependencies
ahr1/demultiplex latest

  • version: 1.7.0
Latest release: over 2 years ago - 44 downloads - 95 dependencies
paulotaugc/16scan-metagenomics v2

  • version: 1.7.0
Latest release: almost 2 years ago - 129 downloads - 776 dependencies