Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
Package Usage : cran : getopt
Explore the latest package usage data for getopt in the cran ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 393
Total downloads: 35,088,972
More details on packages.ecosyste.ms - JSON
broadinstitute/gatk 4.5.0.0
Official release repository for GATK versions 4.x
- version: 1.20.3
veupathdb/rserve 7
- version: 1.20.3
ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 1.20.3
broadinstitute/terra-jupyter-aou 8bf6b13
- version: 1.20.3
ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30
- version: 1.20.3
nfcore/methylseq dev
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.
- version: 1.20.3
broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT
Official repository for nightly development builds of the GATK
- version: 1.20.3
vanallenlab/sv-pipeline-base gnomad_rf_abd6c1
- version: 1.20.3
ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30
- version: 1.20.3
nfcore/atacseq latest
A Docker container for the nf-core/atacseq pipeline.
- version: 1.20.3
nfcore/chipseq dev
A docker image for nf-core/chipseq
- version: 1.20.3
dhspence/docker-basespace_chromoseq latest
- version: 1.20.3
nfcore/eager 2.5.0
A Docker image for the nf-core/eager pipeline.
- version: 1.20.3
mirekphd/ml-cpu-r40-rs-cust 20230912
- version: 1.20.3
mirekphd/ml-cpu-r36-rs-cust latest
- version: 1.20.3
ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 1.20.3
vanallenlab/sv-pipeline filter_gt_029fa3b
- version: 1.20.3
nfcore/ampliseq dev
A Docker image for nf-core/ampliseq.
- version: 1.20.3
biocontainers/bio-tradis v1.4.1dfsg-1-deb_cv1
- version: 1.20.2
biocontainers/ea-utils v1.1.2dfsg-5-deb_cv1
- version: 1.20.2
biocontainers/surankco v0.0.r5dfsg-2-deb_cv1
- version: 1.20.2
mirekphd/ml-cpu-r36-base latest
- version: 1.20.3
tabbzi/terra-dogagingproject-data-curation latest
- version: 1.20.3
kbase/kbase sdkbase.latest
- version: 1.20.0
ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 1.20.3
ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c
- version: 1.20.3
nfcore/bcellmagic dev
A preliminary container for the bcellmagic pipeline
- version: 1.20.3
qcdis/n-a-a-vre-vol2bird v2.2.4-beta
- version: 1.20.4
nfcore/airrflowreport dev
- version: 1.20.3
alexwaldrop/adjust_csv_pvalue a40b48623a4877766f8a388046a2dd2cebe9d8f6
- version: 1.20.2
recetox/retip 0.5.4-recetox4
Retention Time prediction for metabolomics
- version: 1.20.3
nfcore/sarek 2.7.2
A Docker container for the nf-core/sarek pipeline
- version: 1.20.3
intelliseqngs/gatk-4.1.7.0-hg38 1.0.1
- version: 1.20.0
intelliseqngs/task_bam-bsqr 1.2.2
- version: 1.20.3
ebsproject/af-aeo dev-ecs-23.06.13
- version: 1.20.3
nfcore/slamseq dev
A docker image for nf-core/slamseq
- version: 1.20.3
intelliseqngs/task_bam-filter-mismatch 1.4.1
- version: 1.20.3
nfcore/hic dev
A docker container for the nf-core/hic pipeline.
- version: 1.20.3
intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest
- version: 1.20.3
intelliseqngs/gatk-4.1.7.0 1.0.4
- version: 1.20.0
intelliseqngs/task_bam-metrics 1.2.8
- version: 1.20.0
intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2
- version: 1.20.3
intelliseqngs/gatk-4.1.6.0-hg38 1.1.0
- version: 1.20.0
intelliseqngs/gatk-4.1.6.0 2.0.2
- version: 1.20.0
qcdis/n-a-a-vre v2.2.7-beta
- version: 1.20.4
intelliseqngs/task_mt-varcall-mutect2 1.1.2
- version: 1.20.3
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest
- version: 1.20.3
intelliseqngs/gatk-4.2.0.0 1.0.0
- version: 1.20.3
intelliseqngs/task_vcf-concat 1.0.4
- version: 1.20.3
intelliseqngs/task_vcf-anno-cosmic 2.0.0
- version: 1.20.3
qcdis/n-a-a-vre-laserfarm v2.2.7-beta
- version: 1.20.4
intelliseqngs/task_mt-realign 1.1.2
- version: 1.20.3
intelliseqngs/task_bam-gatk-m2 1.1.2
- version: 1.20.3
intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2
- version: 1.20.3
intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0
- version: 1.20.3
intelliseqngs/task_vcf-qc 1.4.0
- version: 1.20.3
hoonbiolab/cellranger v1.0
- version: 1.20.3
intelliseqngs/task_vcf-prepare 1.0.3
- version: 1.20.3
dg520/rsimple 1.1
- version: 1.20.3
mirekphd/ml-cpu-r35-rs 20190201
- version: 1.20.2
nfcore/exoseq dev
A docker container for the ExoSeq pipeline
- version: 1.20.2
intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1
- version: 1.20.0
seglh/exomedepth f4716ad
- version: 1.20.4, 1.20.3
intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0
- version: 1.20.3
gene110/nipt_report latest
- version: 1.20.3
kbase/kbase_base latest
KBase Base Image containing Core services and runtime
- version: 1.20.0
kbase/sdkbase latest
- version: 1.20.0
evolbioinfo/table2itol fa4b43c
The table2itol.R script makes it easy to generate iTOL annotations from spreadsheet files.
- version: 1.20.3
intelliseqngs/gatk-4.2.4.1-hg38 1.0.0
- version: 1.20.3
vanallenlab/sv-pipeline-qc gnomad_v3_qc
- version: 1.20.3
intelliseqngs/task_vcf-concat-beagle 1.1.3
- version: 1.20.3
intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2
- version: 1.20.3
intelliseqngs/resources longranger_v0.1
- version: 1.20.0
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest
- version: 1.20.3
intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2
- version: 1.20.3
bactopia/tools-phyloflash 1.7.1
- version: 1.20.3
mirekphd/ml-cpu-r35-jnb devel_2b2752c
- version: 1.20.2
hoonbiolab/align_dna v1.3
- version: 1.20.3
biocontainers/ramid phenomenal-v1.0_cv1.0.18
R-program to read CDF files created by mass spectrometry and evaluate the MS 13C-labeled metabolites
- version: 1.20.2
intelliseqngs/task_pileup-merge 1.0.2
- version: 1.20.3
dhspence/docker-ichor latest
- version: 1.20.2
trust1/gatk version0.4.1
Variant Calling Pipeline based on GATK image
- version: 1.20.0
ocdr/r_server citox
- version: 1.20.3
intelliseqngs/astrolabe 1.0.0
- version: 1.20.0
intelliseqngs/bcl-to-fq 1.0.2
- version: 1.20.3
ctomlins/minion_qc latest
- version: 1.20.2
hoonbiolab/hmftools v1.1
- version: 1.20.3
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0
- version: 1.20.3
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor
pcawg_broad_wgs_variant_callers
- version: 1.20.1
chgyi/bio 3.5.1
- version: 1.20.2