Data

Tools

Indexes

Applications

Experiments

Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : getopt

Explore the latest package usage data for getopt in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 393
Total downloads: 35,088,972
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

ccdlstaging/dr_illumina 1.45.8

  • version: 1.20.3
Latest release: over 2 years ago - 6,466 downloads - 893 dependencies
robertplayer/scidap-qiime2 stable

  • version: 1.20.3
Latest release: over 2 years ago - 34 downloads - 527 dependencies
princessmaximacenter/cnv-tools 3.2.0

  • version: 1.20.3
Latest release: 5 months ago - 1,619 downloads - 481 dependencies
intelliseqngs/bcl-to-fq 1.0.2

  • version: 1.20.3
Latest release: almost 3 years ago - 199 downloads - 1,047 dependencies
dmiller15/gatk 4.1.7.0R0.1

  • version: 1.20.3
Latest release: over 5 years ago - 59 downloads - 866 dependencies
biocorecrg/trax 0.2

  • version: 1.20.3
Latest release: over 2 years ago - 34 downloads - 296 dependencies
ctomlins/minion_qc latest

  • version: 1.20.2
Latest release: over 7 years ago - 195 downloads - 654 dependencies
intelliseqngs/task_bam-metrics-hg38 1.0.2

  • version: 1.20.3
Latest release: almost 3 years ago - 112 downloads - 1,144 dependencies
dolphinnext/ont_variant_calling 1.0

  • version: 1.20.3
Latest release: almost 3 years ago - 90 downloads - 494 dependencies
ocdr/custom-kfserving R-sonar-mm

  • version: 1.20.3
Latest release: over 4 years ago - 309 downloads - 445 dependencies
globusgenomics/picrust 1.0

  • version: 1.20.3
Latest release: almost 3 years ago - 129 downloads - 595 dependencies
hoonbiolab/hmftools v1.1

  • version: 1.20.3
Latest release: about 4 years ago - 1,322 downloads - 693 dependencies
ccdlstaging/dr_affymetrix 1.45.8

  • version: 1.20.3
Latest release: over 2 years ago - 95,753 downloads - 1,220 dependencies
crukcibioinformatics/sequencingbase 9.3.4

  • version: 1.20.4
Latest release: 9 months ago - 323 downloads - 1,183 dependencies
ctomlins/score latest

  • version: 1.20.3
Latest release: almost 3 years ago - 47 downloads - 799 dependencies
luisas/gatk latest

  • version: 1.20.0
Latest release: over 7 years ago - 110 downloads - 374 dependencies
hoonbiolab/ccle-cga v0.2

  • version: 1.20.3
Latest release: almost 3 years ago - 255 downloads - 586 dependencies
nfcore/methylseq 1.6.1

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 1.20.3
Latest release: over 4 years ago - 95,358 downloads - 297 dependencies
mirekphd/ml-cpu-r35-nx devel_fdbf539

  • version: 1.20.2
Latest release: over 7 years ago - 443 downloads - 9,302 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: 1.20.3
Latest release: over 2 years ago - 332 downloads - 571 dependencies
seglh/exomedepth f4716ad

  • version: 1.20.3
Latest release: almost 2 years ago - 1,496 downloads - 548 dependencies
raghukirannavipoint/aldex2 mar23

  • version: 1.20.3
Latest release: over 2 years ago - 121 downloads - 1,548 dependencies
zymoresearch/bio_resource_builder v1.0

  • version: 1.20.3
Latest release: over 2 years ago - 22 downloads - 335 dependencies
mmingay/dinopore 0.2

  • version: 1.20.3
Latest release: almost 3 years ago - 219 downloads - 695 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 1.20.3
Latest release: about 4 years ago - 110 downloads - 828 dependencies
evolbioinfo/r-sra v3.6.1

  • version: 1.20.3
Latest release: over 6 years ago - 49 downloads - 466 dependencies
hoonbiolab/vcf-kit v1.1

  • version: 1.20.3
Latest release: about 4 years ago - 86 downloads - 840 dependencies
mirekphd/ml-gpu-r35-cuda90-rstud devel_9f39157

  • version: 1.20.2
Latest release: over 7 years ago - 40 downloads - 9,414 dependencies
hoonbiolab/gatk4_scnv v1.1

  • version: 1.20.3
Latest release: about 4 years ago - 36 downloads - 811 dependencies
broadcptac/panoply_so_nmf_report 1_3

  • version: 1.20.3
Latest release: over 2 years ago - 21 downloads - 725 dependencies
hoonbiolab/ascat v1.1

  • version: 1.20.3
Latest release: about 4 years ago - 41 downloads - 792 dependencies
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 1.20.3
Latest release: over 1 year ago - 186,109 downloads - 912 dependencies
ztamayo/nbridge-os latest

  • version: 1.20.3
Latest release: over 6 years ago - 52 downloads - 827 dependencies
hongminc1/tskit_test latest

  • version: 1.20.3
Latest release: almost 3 years ago - 25 downloads - 897 dependencies
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

  • version: 1.20.3
Latest release: about 4 years ago - 183 downloads - 1,057 dependencies
hoonbiolab/svaba r4

  • version: 1.20.3
Latest release: about 3 years ago - 62 downloads - 742 dependencies
evolbioinfo/minionqc v1.4.1

Quality control for MinION sequencing data

  • version: 1.20.3
Latest release: over 6 years ago - 165 downloads - 500 dependencies
chgyi/bio 3.5.1

  • version: 1.20.2
Latest release: about 7 years ago - 661 downloads - 1,077 dependencies
intelliseqngs/gatk-4.2.4.1 1.0.1

  • version: 1.20.3
Latest release: almost 3 years ago - 177 downloads - 1,118 dependencies
qcdis/traits-computation-marylm88 latest

  • version: 1.20.3
Latest release: over 2 years ago - 24 downloads - 2,178 dependencies
koki/bindsc 20220609

  • version: 1.20.3
Latest release: over 3 years ago - 52 downloads - 2,060 dependencies
rahulg603/gatk_samtools_docker latest

  • version: 1.20.3
Latest release: over 2 years ago - 15,899 downloads - 839 dependencies
peterdjames/r_base_with_packs_inlc_rkdb latest

  • version: 1.20.3
Latest release: almost 3 years ago - 203 downloads - 1,630 dependencies
broadinstitute/pcawg_full 7

  • version: 1.20.0
Latest release: about 8 years ago - 420 downloads - 889 dependencies
mfsentma/atacseq latest

  • version: 1.20.3
Latest release: over 2 years ago - 34 downloads - 852 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 1.20.3
Latest release: over 2 years ago - 417 downloads - 1,367 dependencies
evolbioinfo/treestructure a831a66

treestructure R package (Volz et al. bioRxiv 704528; doi: https://doi.org/10.1101/704528)

  • version: 1.20.3
Latest release: almost 6 years ago - 50 downloads - 508 dependencies
hoonbiolab/hl_base v1.2

  • version: 1.20.3
Latest release: about 3 years ago - 177 downloads - 873 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 1.20.3
Latest release: over 2 years ago - 190 downloads - 752 dependencies
chgyi/metaware_rna_denovo latest

  • version: 1.20.2
Latest release: over 6 years ago - 360 downloads - 2,095 dependencies
hoonbiolab/sequenza v1.1

  • version: 1.20.3
Latest release: about 4 years ago - 36 downloads - 801 dependencies
qdidiscoveryservices/vcfcompare 1.0

  • version: 1.20.3
Latest release: over 2 years ago - 1,043 downloads - 784 dependencies
cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

  • version: 1.20.3
Latest release: over 2 years ago - 47 downloads - 1,604 dependencies
alexthiery/archr 3.1

  • version: 1.20.3
Latest release: over 2 years ago - 202 downloads - 819 dependencies
smemane20/error_thres_amd_64 latest

  • version: 1.20.3
Latest release: over 2 years ago - 21 downloads - 618 dependencies
intelliseqngs/collect-hs-metrics 1.0.0

  • version: 1.20.0
Latest release: over 5 years ago - 194 downloads - 928 dependencies
denklewer/linseedv2 latest

  • version: 1.20.3
Latest release: almost 3 years ago - 425 downloads - 1,153 dependencies
hoonbiolab/svtools v0.4.0

  • version: 1.20.3
Latest release: almost 2 years ago - 117 downloads - 681 dependencies
alexthiery/schelper seurat-schelper-0.3.5

  • version: 1.20.3
Latest release: over 2 years ago - 389 downloads - 1,494 dependencies
dmiller15/sequenza 3.0.0

  • version: 1.20.3
Latest release: almost 3 years ago - 139 downloads - 448 dependencies
markshill/clustering_tree_building-env latest

  • version: 1.20.3
Latest release: about 3 years ago - 43 downloads - 1,416 dependencies
vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

  • version: 1.20.3
Latest release: almost 3 years ago - 93,703 downloads - 1,101 dependencies
natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

  • version: 1.20.3
Latest release: over 2 years ago - 273 downloads - 1,392 dependencies
albertea/numbat_light 02

  • version: 1.20.3
Latest release: over 2 years ago - 145 downloads - 301 dependencies
nolandocker/chipseq latest

Ubuntu image with R,(4.3.3), Python(3.12), java(21) including bioinformatics tools for ChIP-seq.

  • version: 1.20.3
Latest release: almost 3 years ago - 93 downloads - 359 dependencies
alenaerts/deseq2 v1

  • version: 1.20.4
Latest release: about 2 years ago - 20 downloads - 480 dependencies
andrewatmp/qiime_unzip latest

  • version: 1.20.3
Latest release: over 2 years ago - 151 downloads - 598 dependencies
broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

  • version: 1.20.4
Latest release: 8 months ago - 40,521,415 downloads - 513 dependencies
lopesi2bc/surfmap 2.2.0

  • version: 1.20.3
Latest release: over 1 year ago - 216 downloads - 94 dependencies
broadcptacdev/activedriver_mimp latest

  • version: 1.20.3
Latest release: over 2 years ago - 92 downloads - 374 dependencies
ethill/qiime2 latest

docker container for qiime2

  • version: 1.20.3
Latest release: almost 3 years ago - 20 downloads - 1,935 dependencies
hoonbiolab/absolute v1.5

  • version: 1.20.3
Latest release: almost 3 years ago - 121 downloads - 346 dependencies
crpeters/r-methylkit 4.2.1

  • version: 1.20.3
Latest release: almost 3 years ago - 80 downloads - 383 dependencies
khoulaha/shatterseek v1.0.0

  • version: 1.20.3
Latest release: almost 3 years ago - 28 downloads - 664 dependencies
harshaldeokar/us_medgenome_v12 latest

  • version: 1.20.3
Latest release: over 2 years ago - 66 downloads - 2,611 dependencies
etycksen/sc_deluxe 0.7

Docker for Seurat5 and related scRNA-seq packages as well as ScanPy, SquidPy, and scvi-tools.

  • version: 1.20.3
Latest release: 7 months ago - 2,648 downloads - 757 dependencies
maulik23/scalepopgen 0.1.2

  • version: 1.20.3
Latest release: over 2 years ago - 68 downloads - 156 dependencies
hoonbiolab/aa_tools v2.3.1.1

  • version: 1.20.3
Latest release: about 4 years ago - 34 downloads - 432 dependencies
alexsickler/open-pedcan latest

  • version: 1.20.3
Latest release: almost 3 years ago - 219 downloads - 864 dependencies
intelliseqngs/gatk-4.1.9.0-hg38 1.0.0

  • version: 1.20.3
Latest release: over 4 years ago - 18 downloads - 677 dependencies
emersonchao/dsc180b latest

  • version: 1.20.3
Latest release: almost 3 years ago - 57 downloads - 2,266 dependencies
sbastkowski/quatradis-base latest-arm64

  • version: 1.20.3
Latest release: 6 months ago - 192 downloads - 396 dependencies
graefox/rapid_cns2 modkit_test

  • version: 1.20.3
Latest release: over 1 year ago - 320 downloads - 625 dependencies
broadcptac/panoply_so_nmf_sankey_report DEV

  • version: 1.20.3
Latest release: over 2 years ago - 74 downloads - 383 dependencies
shiramaty/qiime2-sratools latest

  • version: 1.20.3
Latest release: almost 3 years ago - 24 downloads - 319 dependencies
qcdis/test-diederik-r2-diederik latest

  • version: 1.20.3
Latest release: over 2 years ago - 20 downloads - 2,171 dependencies
proteogenomics/missing-value-imputation latest

  • version: 1.20.3
Latest release: over 2 years ago - 181 downloads - 215 dependencies
hongminc1/r_tskit_test latest

  • version: 1.20.3
Latest release: almost 3 years ago - 51 downloads - 279 dependencies
mknudson/share_task_cell_annotation mei-cell-annotation

  • version: 1.20.3
Latest release: about 2 years ago - 147 downloads - 316 dependencies
yiluxiangbei/pumpkin-gatk-notebook 1.0

  • version: 1.20.3
Latest release: about 4 years ago - 21 downloads - 1,570 dependencies
brusconi/seurat new

  • version: 1.20.3
Latest release: over 1 year ago - 146 downloads - 536 dependencies
msantoso98/cnv-tools 3.0.1

  • version: 1.20.3
Latest release: over 2 years ago - 100 downloads - 192 dependencies
biomehub/encodestatsbase 0.0.6

Basic docker image used as a base for EncodeStats.

  • version: 1.20.4
Latest release: almost 2 years ago - 591 downloads - 853 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 1.20.3
Latest release: over 2 years ago - 61 downloads - 2,387 dependencies
recetox/chem_identifier_converter latest

  • version: 1.20.3
Latest release: about 5 years ago - 53 downloads - 194 dependencies
intelliseqngs/gatk-4.1.6.0-grch38-no-alt 1.0.0

  • version: 1.20.0
Latest release: over 5 years ago - 18 downloads - 437 dependencies
hoonbiolab/hmftools_purple v3.7.2

  • version: 1.20.3
Latest release: almost 3 years ago - 17 downloads - 270 dependencies
jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

  • version: 1.20.3
Latest release: about 2 months ago - 1,863 downloads - 3,823 dependencies
dabbleofdevops/nextneopi 20230817

  • version: 1.20.3
Latest release: over 2 years ago - 119 downloads - 499 dependencies
hoonbiolab/hmftools_snv v3.2.2

  • version: 1.20.3
Latest release: almost 3 years ago - 25 downloads - 271 dependencies