Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : optparse

Explore the latest package usage data for optparse in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 369
Total downloads: 35,024,330

More details on packages.ecosyste.ms - JSON

broadinstitute/gatk 4.5.0.0

Official release repository for GATK versions 4.x

  • version: 1.6.4
Latest release: 12 months ago - 31,988,536 downloads - 912 dependencies
veupathdb/rserve 7

  • version: 1.7.3
Latest release: 12 months ago - 624,940 downloads - 550 dependencies
ccdlstaging/dr_downloaders 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.7.1
Latest release: 12 months ago - 124,831 downloads - 1,028 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 1.7.3
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
ccdlstaging/dr_affymetrix f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 1.4.4
Latest release: about 1 year ago - 92,270 downloads - 1,220 dependencies
nfcore/methylseq dev

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.

  • version: 1.6.6
Latest release: over 3 years ago - 92,677 downloads - 297 dependencies
broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 1.6.4
Latest release: 11 months ago - 86,066 downloads - 912 dependencies
vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

  • version: 1.7.3
Latest release: almost 2 years ago - 88,219 downloads - 1,101 dependencies
ccdlstaging/dr_salmon f30409aceba66e19235b21b4ca8899e318e02e30

  • version: 1.4.4
Latest release: about 1 year ago - 57,229 downloads - 916 dependencies
nfcore/atacseq latest

A Docker container for the nf-core/atacseq pipeline.

  • version: 1.6.6
Latest release: over 2 years ago - 54,429 downloads - 352 dependencies
nfcore/chipseq dev

A docker image for nf-core/chipseq

  • version: 1.6.6
Latest release: over 3 years ago - 50,176 downloads - 309 dependencies
dhspence/docker-basespace_chromoseq latest

  • version: 1.6.2
Latest release: over 5 years ago - 38,314 downloads - 559 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 1.7.3
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
mirekphd/ml-cpu-r40-rs-cust 20230912

  • version: 1.7.3
Latest release: about 1 year ago - 21,613 downloads - 10,962 dependencies
ccdlstaging/dr_no_op 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.4.4
Latest release: 12 months ago - 14,674 downloads - 894 dependencies
vanallenlab/sv-pipeline filter_gt_029fa3b

  • version: 1.7.3
Latest release: over 1 year ago - 22,757 downloads - 1,231 dependencies
nfcore/ampliseq dev

A Docker image for nf-core/ampliseq.

  • version: 1.6.4
Latest release: almost 4 years ago - 10,364 downloads - 331 dependencies
biocontainers/surankco v0.0.r5dfsg-2-deb_cv1

  • version: 1.6.1
Latest release: about 5 years ago - 7,465 downloads - 857 dependencies
tabbzi/terra-dogagingproject-data-curation latest

  • version: 1.7.1
Latest release: over 2 years ago - 9,874 downloads - 706 dependencies
kbase/kbase sdkbase.latest

  • version: 1.3.0
Latest release: over 6 years ago - 4,258 downloads - 2,934 dependencies
ccdlstaging/dr_smasher 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.4.4
Latest release: 12 months ago - 4,929 downloads - 884 dependencies
ccdlstaging/dr_illumina 549216c6fa7f6c80a5d78287c8814330f150428c

  • version: 1.4.4
Latest release: 12 months ago - 3,448 downloads - 893 dependencies
nfcore/bcellmagic dev

A preliminary container for the bcellmagic pipeline

  • version: 1.6.2
Latest release: over 3 years ago - 2,594 downloads - 298 dependencies
qcdis/n-a-a-vre-vol2bird v2.2.4-beta

  • version: 1.7.3
Latest release: 12 months ago - 2,854 downloads - 2,623 dependencies
nfcore/airrflowreport dev

  • version: 1.7.3
Latest release: over 1 year ago - 994 downloads - 409 dependencies
alexwaldrop/adjust_csv_pvalue a40b48623a4877766f8a388046a2dd2cebe9d8f6

  • version: 1.6.1
Latest release: almost 6 years ago - 979 downloads - 455 dependencies
recetox/retip 0.5.4-recetox4

Retention Time prediction for metabolomics

  • version: 1.6.6
Latest release: over 3 years ago - 977 downloads - 524 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: 1.7.1
Latest release: over 2 years ago - 1,052,189 downloads - 607 dependencies
intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

  • version: 1.3.2
Latest release: over 4 years ago - 38,602 downloads - 842 dependencies
intelliseqngs/task_bam-bsqr 1.2.2

  • version: 1.6.4
Latest release: almost 2 years ago - 30,911 downloads - 1,038 dependencies
ebsproject/af-aeo dev-ecs-23.06.13

  • version: 1.7.1
Latest release: over 1 year ago - 31,036 downloads - 586 dependencies
intelliseqngs/task_bam-filter-mismatch 1.4.1

  • version: 1.6.4
Latest release: almost 2 years ago - 21,820 downloads - 1,138 dependencies
nfcore/hic dev

A docker container for the nf-core/hic pipeline.

  • version: 1.6.6
Latest release: about 3 years ago - 15,244 downloads - 257 dependencies
intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

  • version: 1.6.4
Latest release: almost 3 years ago - 12,626 downloads - 948 dependencies
intelliseqngs/gatk-4.1.7.0 1.0.4

  • version: 1.3.2
Latest release: over 4 years ago - 10,089 downloads - 1,006 dependencies
intelliseqngs/task_bam-metrics 1.2.8

  • version: 1.3.2
Latest release: about 4 years ago - 7,556 downloads - 1,007 dependencies
intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

  • version: 1.6.4
Latest release: almost 2 years ago - 5,097 downloads - 1,140 dependencies
intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

  • version: 1.3.2
Latest release: over 4 years ago - 4,290 downloads - 842 dependencies
intelliseqngs/gatk-4.1.6.0 2.0.2

  • version: 1.3.2
Latest release: over 4 years ago - 3,337 downloads - 842 dependencies
qcdis/n-a-a-vre v2.2.7-beta

  • version: 1.7.3
Latest release: 11 months ago - 4,373 downloads - 2,624 dependencies
intelliseqngs/task_mt-varcall-mutect2 1.1.2

  • version: 1.6.4
Latest release: almost 2 years ago - 2,784 downloads - 1,038 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

  • version: 1.6.4
Latest release: almost 2 years ago - 2,314 downloads - 1,040 dependencies
intelliseqngs/gatk-4.2.0.0 1.0.0

  • version: 1.6.4
Latest release: over 3 years ago - 2,311 downloads - 957 dependencies
intelliseqngs/task_vcf-concat 1.0.4

  • version: 1.6.4
Latest release: over 1 year ago - 2,566 downloads - 1,043 dependencies
intelliseqngs/task_vcf-anno-cosmic 2.0.0

  • version: 1.6.4
Latest release: about 1 year ago - 2,498 downloads - 346 dependencies
qcdis/n-a-a-vre-laserfarm v2.2.7-beta

  • version: 1.7.3
Latest release: 11 months ago - 3,953 downloads - 2,599 dependencies
intelliseqngs/task_mt-realign 1.1.2

  • version: 1.6.4
Latest release: almost 2 years ago - 2,028 downloads - 1,038 dependencies
intelliseqngs/task_bam-gatk-m2 1.1.2

  • version: 1.6.4
Latest release: almost 2 years ago - 1,949 downloads - 1,038 dependencies
intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

  • version: 1.6.4
Latest release: almost 2 years ago - 1,947 downloads - 1,038 dependencies
intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

  • version: 1.6.4
Latest release: about 3 years ago - 1,698 downloads - 957 dependencies
intelliseqngs/task_vcf-qc 1.4.0

  • version: 1.7.3
Latest release: about 2 years ago - 1,408 downloads - 604 dependencies
hoonbiolab/cellranger v1.0

  • version: 1.6.6
Latest release: almost 3 years ago - 919 downloads - 682 dependencies
intelliseqngs/task_vcf-prepare 1.0.3

  • version: 1.6.4
Latest release: almost 2 years ago - 914 downloads - 1,038 dependencies
dg520/rsimple 1.1

  • version: 1.7.3
Latest release: almost 2 years ago - 777 downloads - 403 dependencies
mirekphd/ml-cpu-r35-rs 20190201

  • version: 1.6.1
Latest release: almost 6 years ago - 762 downloads - 9,716 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 1.6.0
Latest release: about 6 years ago - 1,158 downloads - 616 dependencies
intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

  • version: 1.3.2
Latest release: over 4 years ago - 640 downloads - 842 dependencies
seglh/exomedepth f4716ad

  • version: 1.7.3
Latest release: 12 months ago - 928 downloads - 548 dependencies
intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

  • version: 1.6.4
Latest release: almost 3 years ago - 614 downloads - 946 dependencies
gene110/nipt_report latest

  • version: 1.6.6
Latest release: over 3 years ago - 785 downloads - 676 dependencies
kbase/kbase_base latest

KBase Base Image containing Core services and runtime

  • version: 1.3.0
Latest release: about 8 years ago - 510 downloads - 3,106 dependencies
kbase/sdkbase latest

  • version: 1.3.0
Latest release: almost 8 years ago - 476 downloads - 2,934 dependencies
evolbioinfo/table2itol fa4b43c

The table2itol.R script makes it easy to generate iTOL annotations from spreadsheet files.

  • version: 1.7.1
Latest release: over 2 years ago - 475 downloads - 348 dependencies
intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

  • version: 1.6.4
Latest release: almost 3 years ago - 362 downloads - 946 dependencies
vanallenlab/sv-pipeline-qc gnomad_v3_qc

  • version: 1.6.6
Latest release: almost 2 years ago - 338 downloads - 1,373 dependencies
intelliseqngs/task_vcf-concat-beagle 1.1.3

  • version: 1.6.4
Latest release: over 1 year ago - 364 downloads - 1,041 dependencies
intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

  • version: 1.6.4
Latest release: almost 2 years ago - 312 downloads - 1,038 dependencies
intelliseqngs/resources longranger_v0.1

  • version: 1.3.2
Latest release: over 4 years ago - 312 downloads - 1,305 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

  • version: 1.6.4
Latest release: almost 2 years ago - 308 downloads - 1,040 dependencies
intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

  • version: 1.6.4
Latest release: almost 2 years ago - 304 downloads - 1,142 dependencies
bactopia/tools-phyloflash 1.7.1

  • version: 1.6.6
Latest release: over 3 years ago - 518 downloads - 279 dependencies
hoonbiolab/align_dna v1.3

  • version: 1.6.6
Latest release: about 3 years ago - 275 downloads - 794 dependencies
biocontainers/ramid phenomenal-v1.0_cv1.0.18

R-program to read CDF files created by mass spectrometry and evaluate the MS 13C-labeled metabolites

  • version: 1.6.0
Latest release: over 6 years ago - 530 downloads - 269 dependencies
intelliseqngs/task_pileup-merge 1.0.2

  • version: 1.6.4
Latest release: almost 2 years ago - 281 downloads - 1,038 dependencies
dhspence/docker-ichor latest

  • version: 1.6.0
Latest release: over 6 years ago - 236 downloads - 961 dependencies
trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

  • version: 1.3.2
Latest release: about 4 years ago - 212 downloads - 965 dependencies
ocdr/r_server citox

  • version: 1.6.6
Latest release: about 4 years ago - 210 downloads - 507 dependencies
intelliseqngs/astrolabe 1.0.0

  • version: 1.3.2
Latest release: about 4 years ago - 188 downloads - 1,097 dependencies
intelliseqngs/bcl-to-fq 1.0.2

  • version: 1.6.4
Latest release: almost 2 years ago - 184 downloads - 1,047 dependencies
ctomlins/minion_qc latest

  • version: 1.6.0
Latest release: over 6 years ago - 175 downloads - 654 dependencies
hoonbiolab/hmftools v1.1

  • version: 1.6.6
Latest release: about 3 years ago - 1,211 downloads - 693 dependencies
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

  • version: 1.6.4
Latest release: about 3 years ago - 165 downloads - 1,057 dependencies
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor

pcawg_broad_wgs_variant_callers

  • version: 1.4.4
Latest release: almost 7 years ago - 246 downloads - 865 dependencies
chgyi/bio 3.5.1

  • version: 1.6.0
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
evolbioinfo/minionqc v1.4.1

Quality control for MinION sequencing data

  • version: 1.6.2
Latest release: over 5 years ago - 155 downloads - 500 dependencies
ocdr/custom-kfserving R-sonar-mm

  • version: 1.6.6
Latest release: over 3 years ago - 160 downloads - 445 dependencies
swekhande/sw-dockers it-pbs

  • version: 1.7.3
Latest release: almost 2 years ago - 323 downloads - 346 dependencies
broadinstitute/pcawg_full 7

  • version: 1.4.4
Latest release: about 7 years ago - 146 downloads - 889 dependencies
hoonbiolab/hl_base v1.2

  • version: 1.7.3
Latest release: about 2 years ago - 136 downloads - 873 dependencies
chgyi/metaware_rna_denovo latest

  • version: 1.6.1
Latest release: over 5 years ago - 132 downloads - 2,095 dependencies