Data

Tools

Indexes

Applications

Experiments

Docker

An open API service providing dependency metadata for docker images.

Package Usage : pypi : cutadapt

Explore the latest package usage data for cutadapt in the pypi ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 56
Total downloads: 132,567
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

ctomlins/tellread_2022 latest

  • version: 2.5
Latest release: about 3 years ago - 62 downloads - 711 dependencies
biodancer/nasap_performance latest

write later

  • version: 3.5
Latest release: about 3 years ago - 119 downloads - 2,006 dependencies
ctomlins/trim_galore latest

  • version: 2.8
Latest release: about 4 years ago - 91 downloads - 357 dependencies
globusgenomics/picrust 1.0

  • version: 3.7
Latest release: almost 3 years ago - 130 downloads - 595 dependencies
dhspence/docker-smallrnaseq latest

  • version: 1.16
Latest release: over 7 years ago - 862 downloads - 911 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: 4.1, 3.2
Latest release: over 2 years ago - 332 downloads - 571 dependencies
ctomlins/testuniv latest

  • version: 2.5
Latest release: about 4 years ago - 89 downloads - 536 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 3.7
Latest release: almost 3 years ago - 403 downloads - 849 dependencies
y9ch/bidseq rice

🧪 BID-seq for detecting pseudouridine modification on RNA

  • version: 4.3.dev4 gd24db04
  • vcs_url: git https://github.com/marcelm/cutadapt.git@d24db0466fad671153eed6681f49befba0fbfe05
Latest release: over 2 years ago - 1,604 downloads - 251 dependencies
ctomlins/bcl2fastq latest

  • version: 1.16
Latest release: over 4 years ago - 58 downloads - 474 dependencies
jpsmith5/peppro 0.10.2

  • version: 4.1
Latest release: about 3 years ago - 102 downloads - 1,163 dependencies
bryoinformatics/rna-seq v1.0.0

A container for the RNAseq pipeline (https://github.com/bryoinformatics/RNAseq).

  • version: 4.3, 1.18
Latest release: over 2 years ago - 156 downloads - 188 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 3.7
Latest release: almost 3 years ago - 131 downloads - 1,081 dependencies
ctomlins/testuniv_update latest

  • version: 2.5
Latest release: about 5 years ago - 168 downloads - 758 dependencies
salvacasani/trimming latest

  • version: 3.5
Latest release: over 2 years ago - 222 downloads - 238 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 4.2
Latest release: almost 3 years ago - 201 downloads - 752 dependencies
ctomlins/supernova v2.1.1

  • version: 1.16
Latest release: over 7 years ago - 129 downloads - 297 dependencies
andrewatmp/qiime_unzip latest

  • version: 4.4
Latest release: over 2 years ago - 151 downloads - 598 dependencies
gesiscss/binder-mortonjt-2dq2stats-2dworkshops-912d21 82c8b562545acab37a854f097c33806fa7c2a4b3

  • version: 2.10
Latest release: almost 5 years ago - 35 downloads - 1,679 dependencies
harshaldeokar/us_medgenome_v12 latest

  • version: 2.5
Latest release: over 2 years ago - 66 downloads - 2,611 dependencies
emersonchao/dsc180b latest

  • version: 4.2
Latest release: almost 3 years ago - 62 downloads - 2,266 dependencies
shiramaty/qiime2-sratools latest

  • version: 4.1
Latest release: about 3 years ago - 24 downloads - 319 dependencies
lorentzb/srs 2.0

  • version: 2.10
Latest release: over 2 years ago - 78 downloads - 269 dependencies
bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

  • version: 3.2
Latest release: over 1 year ago - 68 downloads - 421 dependencies
qdidiscoveryservices/gatk-v2461_bwa_vardict latest

  • version: 3.7
Latest release: almost 3 years ago - 15 downloads - 1,069 dependencies
bryoinformatics/variant-id v1.0.0

A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).

  • version: 4.2, 4.3
Latest release: over 2 years ago - 108 downloads - 479 dependencies
djbradshaw2/trimgalore latest

  • version: 4.1
Latest release: about 3 years ago - 37 downloads - 56 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 4.4
Latest release: over 2 years ago - 67 downloads - 2,387 dependencies
jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

  • version: 4.4
Latest release: 3 months ago - 1,863 downloads - 3,823 dependencies
ctomlins/tseq_2 latest

  • version: 2.5
Latest release: about 5 years ago - 30 downloads - 538 dependencies
ctomlins/tseq latest

  • version: 2.5
Latest release: about 5 years ago - 25 downloads - 536 dependencies
bixbeta/pavian v1

  • version: 3.2
Latest release: about 3 years ago - 14 downloads - 388 dependencies
aminhaghparast/genomics21 2.12

  • version: 1.16
Latest release: about 3 years ago - 12 downloads - 522 dependencies
quiestrho/crabs 1.0.0

  • version: 3.5
Latest release: about 3 years ago - 21 downloads - 24 dependencies
sebimer/samba-v4-qiime2 2024.2

  • version: 4.2
Latest release: almost 2 years ago - 284 downloads - 583 dependencies
jorgeamaya/ci_barcode_terra_dada2_iseq v1

  • version: 4.4
Latest release: over 2 years ago - 41 downloads - 483 dependencies
sbouslama/sb-mpxv-nf alpha3

  • version: 0.0.0
Latest release: over 2 years ago - 300 downloads - 907 dependencies
wyangwu/r4.1.2 latest

  • version: 2.8
Latest release: over 2 years ago - 93 downloads - 827 dependencies
bixbeta/cluster_profiler v1

  • version: 3.2
Latest release: about 3 years ago - 18 downloads - 1,038 dependencies
broadinstitute/terra-jupyter-aou 2.1.13

  • version: 4.1
Latest release: about 3 years ago - 97,191 downloads - 4,112 dependencies
felixschlesinger/scalerna bcparser_bam_out

  • version: 4.2
Latest release: almost 2 years ago - 51,750 downloads - 241 dependencies
onurcanbektas/axolotl.rulands.yun latest

  • version: 3.5
Latest release: about 3 years ago - 107 downloads - 459 dependencies
biocontainers/python3-cutadapt v1.12-2-deb_cv1

  • version: 1.12
Latest release: almost 8 years ago - 83 downloads - 108 dependencies
dhspence/encode-atac 1

encode atac pipeline docker image

  • version: 1.9.1
Latest release: about 7 years ago - 152 downloads - 705 dependencies
ctomlins/supertellnova latest

  • version: 1.16
Latest release: almost 5 years ago - 72 downloads - 309 dependencies
biocontainers/python-cutadapt v1.12-2-deb_cv1

  • version: 1.12
Latest release: almost 8 years ago - 59 downloads - 109 dependencies
jorgeamaya/dada2_terra_iseq v1

  • version: 4.4
Latest release: over 2 years ago - 392 downloads - 967 dependencies
mbwali/jupyterlab qiime2023

  • version: 4.2
Latest release: over 2 years ago - 176 downloads - 1,941 dependencies
ctomlins/cutadapt latest

  • version: 4.4
Latest release: over 2 years ago - 133 downloads - 263 dependencies
alexwaldrop/reads2variants v0.0

  • version: 4.1
Latest release: about 3 years ago - 163 downloads - 660 dependencies
shengqh/cqs_smallrnaseq 20240201

  • version: 4.5
Latest release: almost 2 years ago - 519 downloads - 1,416 dependencies
ethill/qiime2 latest

docker container for qiime2

  • version: 4.2
Latest release: almost 3 years ago - 20 downloads - 1,935 dependencies
wilfriedguiblet/ctk v0.1

  • version: 4.3
Latest release: almost 3 years ago - 92 downloads - 156 dependencies
ahr1/demultiplex latest

  • version: 4.2
Latest release: almost 3 years ago - 55 downloads - 95 dependencies
paulotaugc/16scan-metagenomics v2

  • version: 4.4
Latest release: over 2 years ago - 129 downloads - 776 dependencies
repbioinfo/detectseq latest

  • version: 3.5, 4.1
Latest release: over 2 years ago - 66 downloads - 2,183 dependencies