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doejgi/trinityrnaseq-wdl : 2.11.0b

Ubuntu 18.04.4 LTS

Latest release: over 1 year ago - 331 downloads - 980 dependencies

JSON

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.48.0
BH 1.72.0-3
BiasedUrn 1.07
Biobase 2.46.0
BiocFileCache 1.10.2
BiocGenerics 0.32.0
BiocManager 1.30.10
BiocParallel 1.20.1
BiocVersion 3.10.1
Biostrings 2.54.0
DBI 1.1.0
DESeq2 1.26.0
DEXSeq 1.32.0
DelayedArray 0.12.2
Formula 1.2-3
GO.db 3.10.0
GOplot 1.0.2
GenomeInfoDb 1.22.0
GenomeInfoDbData 1.2.2
GenomicAlignments 1.22.1
GenomicFeatures 1.38.2
GenomicRanges 1.38.0
Glimma 1.14.0
Hmisc 4.3-1
IRanges 2.20.2
KernSmooth 2.23-16
MASS 7.3-51.5
Matrix 1.2-18
R6 2.4.1
RColorBrewer 1.1-2
RCurl 1.98-1.1
ROTS 1.14.0
RSQLite 2.2.0
Rcpp 1.0.4
RcppArmadillo 0.9.850.1.0
Rhtslib 1.18.1
Rsamtools 2.2.3
S4Vectors 0.24.3
SummarizedExperiment 1.16.1
XML 3.99-0.3
XVector 0.26.0
acepack 1.4.1
amap 0.8-18
annotate 1.64.0
ape 5.3
argparse 2.0.1
askpass 1.1
assertthat 0.2.1
backports 1.1.5
base64enc 0.1-3
base 3.6.3
biomaRt 2.42.0
bit64 0.9-7
bit 1.1-15.2
bitops 1.0-6
blob 1.2.1
boot 1.3-24
broom 0.5.5
caTools 1.18.0
callr 3.4.2
cellranger 1.1.0
checkmate 2.0.0
class 7.3-15
cli 2.0.2
clipr 0.7.0
cluster 2.1.0
codetools 0.2-16
colorspace 1.4-1
compiler 3.6.3
crayon 1.3.4
ctc 1.60.0
curl 4.3
data.table 1.12.8
datasets 3.6.3
dbplyr 1.4.2
desc 1.2.0
digest 0.6.25
dplyr 0.8.5
edgeR 3.28.1
ellipsis 0.3.0
evaluate 0.14
fansi 0.4.1
farver 2.0.3
fastcluster 1.1.25
findpython 1.0.5
forcats 0.5.0
formatR 1.7
fs 1.3.2
futile.logger 1.4.3
futile.options 1.0.1
foreign 0.8-75
gdata 2.18.0
geneLenDataBase 1.22.0
genefilter 1.68.0
geneplotter 1.64.0
generics 0.0.2
ggdendro 0.1-20
ggplot2 3.3.0
glue 1.3.2
goseq 1.38.0
gplots 3.0.3
grDevices 3.6.3
graphics 3.6.3
grid 3.6.3
gridExtra 2.3
gtable 0.3.0
gtools 3.8.1
haven 2.2.0
highr 0.8
hms 0.5.3
htmlTable 1.13.3
htmltools 0.4.0
htmlwidgets 1.5.1
httr 1.4.1
hwriter 1.3.2
isoband 0.2.0
jpeg 0.1-8.1
jsonlite 1.6.1
knitr 1.28
labeling 0.3
lambda.r 1.2.4
lattice 0.20-38
latticeExtra 0.6-29
lifecycle 0.2.0
limma 3.42.2
locfit 1.5-9.1
lubridate 1.7.4
magrittr 1.5
markdown 1.1
matrixStats 0.56.0
memoise 1.1.0
methods 3.6.3
mgcv 1.8-31
mime 0.9
modelr 0.1.6
munsell 0.5.0
nlme 3.1-144
nnet 7.3-12
openssl 1.4.1
org.testing.db 0.1
parallel 3.6.3
pillar 1.4.3
pkgbuild 1.0.6
pkgconfig 2.0.3
pkgload 1.0.2
plogr 0.2.0
plyr 1.8.6
png 0.1-7
praise 1.0.0
prettyunits 1.1.1
processx 3.4.2
progress 1.2.2
ps 1.3.2
purrr 0.3.3
qvalue 2.18.0
rappdirs 0.3.1
readr 1.3.1
readxl 1.3.1
rematch 1.0.1
reprex 0.3.0
reshape2 1.4.3
rlang 0.4.5
rmarkdown 2.1
rpart 4.1-15
rprojroot 1.3-2
rstudioapi 0.11
rtracklayer 1.46.0
rvest 0.3.5
scales 1.1.0
selectr 0.4-2
snow 0.4-3
spatial 7.3-11
splines 3.6.3
statmod 1.4.34
stats4 3.6.3
stats 3.6.3
stringi 1.4.6
stringr 1.4.0
survival 3.1-8
sys 3.3
tcltk 3.6.3
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 2.3.2
tibble 2.1.3
tidyr 1.0.2
tidyselect 1.0.0
tidyverse 1.3.0
tinytex 0.20
tools 3.6.3
translations 3.6.3
tximport 1.14.0
tximportData 1.14.0
utf8 1.1.4
utils 3.6.3
vctrs 0.2.4
viridis 0.5.1
viridisLite 0.3.0
whisker 0.4
withr 2.1.2
xfun 0.12
xml2 1.2.5
xtable 1.8-4
yaml 2.2.1
zlibbioc 1.32.0

ubuntu/adduser 3.116ubuntu1
ubuntu/apt 1.6.12
ubuntu/at-spi2-core 2.28.0-1
ubuntu/autoconf 2.69-11
ubuntu/automake 1:1.15.1-3ubuntu2
ubuntu/autotools-dev 20180224.1
ubuntu/base-files 10.1ubuntu2.8
ubuntu/base-passwd 3.5.44
ubuntu/bash 4.4.18-2ubuntu1.2
ubuntu/binutils-common 2.30-21ubuntu1~18.04.2
ubuntu/binutils-x86-64-linux-gnu 2.30-21ubuntu1~18.04.2
ubuntu/binutils 2.30-21ubuntu1~18.04.2
ubuntu/bsdutils 1:2.31.1-0.4ubuntu3.5
ubuntu/build-essential 12.4ubuntu1
ubuntu/bzip2-doc 1.0.6-8.1ubuntu0.2
ubuntu/bzip2 1.0.6-8.1ubuntu0.2
ubuntu/ca-certificates-java 20180516ubuntu1~18.04.1
ubuntu/ca-certificates 20180409
ubuntu/cmake-data 3.10.2-1ubuntu2.18.04.1
ubuntu/cmake 3.10.2-1ubuntu2.18.04.1
ubuntu/coreutils 8.28-1ubuntu1
ubuntu/cpp-7 7.5.0-3ubuntu1~18.04
ubuntu/cpp 4:7.4.0-1ubuntu2.3
ubuntu/curl 7.58.0-2ubuntu3.8
ubuntu/cython3 0.26.1-0.4
ubuntu/dash 0.5.8-2.10
ubuntu/dbus 1.12.2-1ubuntu1.1
ubuntu/debconf 1.5.66ubuntu1
ubuntu/debianutils 4.8.4
ubuntu/default-jre-headless 2:1.11-68ubuntu1~18.04.1
ubuntu/default-jre 2:1.11-68ubuntu1~18.04.1
ubuntu/dh-python 3.20180325ubuntu2
ubuntu/diffutils 1:3.6-1
ubuntu/dirmngr 2.2.4-1ubuntu1.2
ubuntu/dpkg-dev 1.19.0.5ubuntu2.3
ubuntu/dpkg 1.19.0.5ubuntu2.3
ubuntu/e2fsprogs 1.44.1-1ubuntu1.3
ubuntu/f2c 20160102-1
ubuntu/fakeroot 1.22-2ubuntu1
ubuntu/fdisk 2.31.1-0.4ubuntu3.5
ubuntu/file 1:5.32-2ubuntu0.3
ubuntu/findutils 4.6.0 git 20170828-2
ubuntu/fontconfig-config 2.12.6-0ubuntu2
ubuntu/fonts-dejavu-core 2.37-1
ubuntu/fonts-dejavu-extra 2.37-1
ubuntu/fonts-droid-fallback 1:6.0.1r16-1.1
ubuntu/fonts-lmodern 2.004.5-3
ubuntu/fonts-noto-mono 20171026-2
ubuntu/fort77 1.15-11
ubuntu/ftp 0.17-34
ubuntu/g -7 7.5.0-3ubuntu1~18.04
ubuntu/g 4:7.4.0-1ubuntu2.3
ubuntu/gcc-7-base 7.5.0-3ubuntu1~18.04
ubuntu/gcc-7 7.5.0-3ubuntu1~18.04
ubuntu/gcc-8-base 8.3.0-26ubuntu1~18.04
ubuntu/gcc 4:7.4.0-1ubuntu2.3
ubuntu/gfortran-7 7.5.0-3ubuntu1~18.04
ubuntu/gfortran 4:7.4.0-1ubuntu2.3
ubuntu/ghc 8.0.2-11
ubuntu/gir1.2-glib-2.0 1.56.1-1
ubuntu/gir1.2-harfbuzz-0.0 1.7.2-1ubuntu1
ubuntu/git-man 1:2.17.1-1ubuntu0.5
ubuntu/git 1:2.17.1-1ubuntu0.5
ubuntu/gnupg-l10n 2.2.4-1ubuntu1.2
ubuntu/gnupg-utils 2.2.4-1ubuntu1.2
ubuntu/gnupg 2.2.4-1ubuntu1.2
ubuntu/gpg-agent 2.2.4-1ubuntu1.2
ubuntu/gpg-wks-client 2.2.4-1ubuntu1.2
ubuntu/gpg-wks-server 2.2.4-1ubuntu1.2
ubuntu/gpg 2.2.4-1ubuntu1.2
ubuntu/gpgconf 2.2.4-1ubuntu1.2
ubuntu/gpgsm 2.2.4-1ubuntu1.2
ubuntu/gpgv 2.2.4-1ubuntu1.2
ubuntu/grep 3.1-2build1
ubuntu/gzip 1.6-5ubuntu1
ubuntu/hostname 3.20
ubuntu/icu-devtools 60.2-3ubuntu3.1
ubuntu/init-system-helpers 1.51
ubuntu/java-common 0.68ubuntu1~18.04.1
ubuntu/krb5-locales 1.16-2ubuntu0.1
ubuntu/less 487-0.1
ubuntu/libacl1 2.2.52-3build1
ubuntu/libalgorithm-diff-perl 1.19.03-1
ubuntu/libalgorithm-diff-xs-perl 0.04-5
ubuntu/libalgorithm-merge-perl 0.08-3
ubuntu/libapparmor1 2.12-4ubuntu5.1
ubuntu/libapt-pkg5.0 1.6.12
ubuntu/libarchive13 3.2.2-3.1ubuntu0.6
ubuntu/libasan4 7.5.0-3ubuntu1~18.04
ubuntu/libasn1-8-heimdal 7.5.0 dfsg-1
ubuntu/libasound2-data 1.1.3-5ubuntu0.2
ubuntu/libasound2 1.1.3-5ubuntu0.2
ubuntu/libassuan0 2.5.1-2
ubuntu/libatk-bridge2.0-0 2.26.2-1
ubuntu/libatk-wrapper-java-jni 0.33.3-20ubuntu0.1
ubuntu/libatk-wrapper-java 0.33.3-20ubuntu0.1
ubuntu/libatk1.0-0 2.28.1-1
ubuntu/libatk1.0-data 2.28.1-1
ubuntu/libatomic1 8.3.0-26ubuntu1~18.04
ubuntu/libatspi2.0-0 2.28.0-1
ubuntu/libattr1 1:2.4.47-2build1
ubuntu/libaudit-common 1:2.8.2-1ubuntu1
ubuntu/libaudit1 1:2.8.2-1ubuntu1
ubuntu/libauthen-sasl-perl 2.1600-1
ubuntu/libavahi-client3 0.7-3.1ubuntu1.2
ubuntu/libavahi-common-data 0.7-3.1ubuntu1.2
ubuntu/libavahi-common3 0.7-3.1ubuntu1.2
ubuntu/libbinutils 2.30-21ubuntu1~18.04.2
ubuntu/libblas-dev 3.7.1-4ubuntu1
ubuntu/libblas3 3.7.1-4ubuntu1
ubuntu/libblkid1 2.31.1-0.4ubuntu3.5
ubuntu/libbsd-dev 0.8.7-1ubuntu0.1
ubuntu/libbsd0 0.8.7-1ubuntu0.1
ubuntu/libbz2-1.0 1.0.6-8.1ubuntu0.2
ubuntu/libbz2-dev 1.0.6-8.1ubuntu0.2
ubuntu/libc-bin 2.27-3ubuntu1
ubuntu/libc-dev-bin 2.27-3ubuntu1
ubuntu/libc6-dev 2.27-3ubuntu1
ubuntu/libc6 2.27-3ubuntu1
ubuntu/libcairo-gobject2 1.15.10-2ubuntu0.1
ubuntu/libcairo-script-interpreter2 1.15.10-2ubuntu0.1
ubuntu/libcairo2-dev 1.15.10-2ubuntu0.1
ubuntu/libcairo2 1.15.10-2ubuntu0.1
ubuntu/libcap-ng0 0.7.7-3.1
ubuntu/libcc1-0 8.3.0-26ubuntu1~18.04
ubuntu/libcilkrts5 7.5.0-3ubuntu1~18.04
ubuntu/libcom-err2 1.44.1-1ubuntu1.3
ubuntu/libcups2 2.2.7-1ubuntu2.7
ubuntu/libcupsfilters1 1.20.2-0ubuntu3.1
ubuntu/libcupsimage2 2.2.7-1ubuntu2.7
ubuntu/libcurl3-gnutls 7.58.0-2ubuntu3.8
ubuntu/libcurl4-openssl-dev 7.58.0-2ubuntu3.8
ubuntu/libcurl4 7.58.0-2ubuntu3.8
ubuntu/libdata-dump-perl 1.23-1
ubuntu/libdb-dev 1:5.3.21~exp1ubuntu2
ubuntu/libdb5.3-dev 5.3.28-13.1ubuntu1.1
ubuntu/libdb5.3 5.3.28-13.1ubuntu1.1
ubuntu/libdbus-1-3 1.12.2-1ubuntu1.1
ubuntu/libdebconfclient0 0.213ubuntu1
ubuntu/libdpkg-perl 1.19.0.5ubuntu2.3
ubuntu/libdrm-amdgpu1 2.4.99-1ubuntu1~18.04.2
ubuntu/libdrm-common 2.4.99-1ubuntu1~18.04.2
ubuntu/libdrm-intel1 2.4.99-1ubuntu1~18.04.2
ubuntu/libdrm-nouveau2 2.4.99-1ubuntu1~18.04.2
ubuntu/libdrm-radeon1 2.4.99-1ubuntu1~18.04.2
ubuntu/libdrm2 2.4.99-1ubuntu1~18.04.2
ubuntu/libedit2 3.1-20170329-1
ubuntu/libelf1 0.170-0.4ubuntu0.1
ubuntu/libencode-locale-perl 1.05-1
ubuntu/liberror-perl 0.17025-1
ubuntu/libexpat1-dev 2.2.5-3ubuntu0.2
ubuntu/libexpat1 2.2.5-3ubuntu0.2
ubuntu/libext2fs2 1.44.1-1ubuntu1.3
ubuntu/libf2c2-dev 20130926-3
ubuntu/libf2c2 20130926-3
ubuntu/libfakeroot 1.22-2ubuntu1
ubuntu/libfdisk1 2.31.1-0.4ubuntu3.5
ubuntu/libffi-dev 3.2.1-8
ubuntu/libffi6 3.2.1-8
ubuntu/libfile-basedir-perl 0.07-1
ubuntu/libfile-desktopentry-perl 0.22-1
ubuntu/libfile-fcntllock-perl 0.22-3build2
ubuntu/libfile-listing-perl 6.04-1
ubuntu/libfile-mimeinfo-perl 0.28-1
ubuntu/libfont-afm-perl 1.20-2
ubuntu/libfontconfig1-dev 2.12.6-0ubuntu2
ubuntu/libfontconfig1 2.12.6-0ubuntu2
ubuntu/libfontenc1 1:1.1.3-1
ubuntu/libfreetype6-dev 2.8.1-2ubuntu2
ubuntu/libfreetype6 2.8.1-2ubuntu2
ubuntu/libgcc-7-dev 7.5.0-3ubuntu1~18.04
ubuntu/libgcc1 1:8.3.0-26ubuntu1~18.04
ubuntu/libgcrypt20 1.8.1-4ubuntu1.2
ubuntu/libgdbm-compat4 1.14.1-6
ubuntu/libgdbm5 1.14.1-6
ubuntu/libgfortran-7-dev 7.5.0-3ubuntu1~18.04
ubuntu/libgfortran4 7.5.0-3ubuntu1~18.04
ubuntu/libghc-zlib-dev 0.6.1.2-1build1
ubuntu/libgif7 5.1.4-2ubuntu0.1
ubuntu/libgirepository-1.0-1 1.56.1-1
ubuntu/libgl1-mesa-dri 19.2.8-0ubuntu0~18.04.3
ubuntu/libgl1 1.0.0-2ubuntu2.3
ubuntu/libglapi-mesa 19.2.8-0ubuntu0~18.04.3
ubuntu/libglib2.0-0 2.56.4-0ubuntu0.18.04.4
ubuntu/libglib2.0-bin 2.56.4-0ubuntu0.18.04.4
ubuntu/libglib2.0-data 2.56.4-0ubuntu0.18.04.4
ubuntu/libglib2.0-dev-bin 2.56.4-0ubuntu0.18.04.4
ubuntu/libglib2.0-dev 2.56.4-0ubuntu0.18.04.4
ubuntu/libglvnd0 1.0.0-2ubuntu2.3
ubuntu/libglx-mesa0 19.2.8-0ubuntu0~18.04.3
ubuntu/libglx0 1.0.0-2ubuntu2.3
ubuntu/libgmp-dev 2:6.1.2 dfsg-2
ubuntu/libgmp10 2:6.1.2 dfsg-2
ubuntu/libgmpxx4ldbl 2:6.1.2 dfsg-2
ubuntu/libgnutls30 3.5.18-1ubuntu1.3
ubuntu/libgomp1 8.3.0-26ubuntu1~18.04
ubuntu/libgpg-error0 1.27-6
ubuntu/libgraphite2-3 1.3.11-2
ubuntu/libgraphite2-dev 1.3.11-2
ubuntu/libgs9-common 9.26~dfsg 0-0ubuntu0.18.04.12
ubuntu/libgs9 9.26~dfsg 0-0ubuntu0.18.04.12
ubuntu/libgssapi-krb5-2 1.16-2ubuntu0.1
ubuntu/libgssapi3-heimdal 7.5.0 dfsg-1
ubuntu/libharfbuzz-dev 1.7.2-1ubuntu1
ubuntu/libharfbuzz-gobject0 1.7.2-1ubuntu1
ubuntu/libharfbuzz-icu0 1.7.2-1ubuntu1
ubuntu/libharfbuzz0b 1.7.2-1ubuntu1
ubuntu/libhcrypto4-heimdal 7.5.0 dfsg-1
ubuntu/libheimbase1-heimdal 7.5.0 dfsg-1
ubuntu/libheimntlm0-heimdal 7.5.0 dfsg-1
ubuntu/libhogweed4 3.4-1
ubuntu/libhtml-form-perl 6.03-1
ubuntu/libhtml-format-perl 2.12-1
ubuntu/libhtml-parser-perl 3.72-3build1
ubuntu/libhtml-tagset-perl 3.20-3
ubuntu/libhtml-tree-perl 5.07-1
ubuntu/libhttp-cookies-perl 6.04-1
ubuntu/libhttp-daemon-perl 6.01-1
ubuntu/libhttp-date-perl 6.02-1
ubuntu/libhttp-message-perl 6.14-1
ubuntu/libhttp-negotiate-perl 6.00-2
ubuntu/libhx509-5-heimdal 7.5.0 dfsg-1
ubuntu/libice-dev 2:1.0.9-2
ubuntu/libice6 2:1.0.9-2
ubuntu/libicu-dev 60.2-3ubuntu3.1
ubuntu/libicu-le-hb-dev 1.0.3 git161113-4
ubuntu/libicu-le-hb0 1.0.3 git161113-4
ubuntu/libicu60 60.2-3ubuntu3.1
ubuntu/libiculx60 60.2-3ubuntu3.1
ubuntu/libidn11 1.33-2.1ubuntu1.2
ubuntu/libidn2-0 2.0.4-1.1ubuntu0.2
ubuntu/libijs-0.35 0.35-13
ubuntu/libio-html-perl 1.001-1
ubuntu/libio-socket-ssl-perl 2.060-3~ubuntu18.04.1
ubuntu/libipc-system-simple-perl 1.25-4
ubuntu/libisl19 0.19-1
ubuntu/libitm1 8.3.0-26ubuntu1~18.04
ubuntu/libjbig0 2.1-3.1build1
ubuntu/libjbig2dec0 0.13-6
ubuntu/libjpeg-dev 8c-2ubuntu8
ubuntu/libjpeg-turbo8-dev 1.5.2-0ubuntu5.18.04.3
ubuntu/libjpeg-turbo8 1.5.2-0ubuntu5.18.04.3
ubuntu/libjpeg8-dev 8c-2ubuntu8
ubuntu/libjpeg8 8c-2ubuntu8
ubuntu/libjsoncpp1 1.7.4-3
ubuntu/libk5crypto3 1.16-2ubuntu0.1
ubuntu/libkeyutils1 1.5.9-9.2ubuntu2
ubuntu/libkpathsea6 2017.20170613.44572-8ubuntu0.1
ubuntu/libkrb5-26-heimdal 7.5.0 dfsg-1
ubuntu/libkrb5-3 1.16-2ubuntu0.1
ubuntu/libkrb5support0 1.16-2ubuntu0.1
ubuntu/libksba8 1.3.5-2
ubuntu/liblcms2-2 2.9-1ubuntu0.1
ubuntu/libldap-2.4-2 2.4.45 dfsg-1ubuntu1.4
ubuntu/libldap-common 2.4.45 dfsg-1ubuntu1.4
ubuntu/libllvm9 1:9-2~ubuntu18.04.2
ubuntu/liblocale-gettext-perl 1.07-3build2
ubuntu/liblsan0 8.3.0-26ubuntu1~18.04
ubuntu/liblwp-mediatypes-perl 6.02-1
ubuntu/liblwp-protocol-https-perl 6.07-2
ubuntu/liblz4-1 0.0~r131-2ubuntu3
ubuntu/liblzma-dev 5.2.2-1.3
ubuntu/liblzma5 5.2.2-1.3
ubuntu/liblzo2-2 2.08-1.2
ubuntu/libmagic-mgc 1:5.32-2ubuntu0.3
ubuntu/libmagic1 1:5.32-2ubuntu0.3
ubuntu/libmailtools-perl 2.18-1
ubuntu/libmount1 2.31.1-0.4ubuntu3.5
ubuntu/libmpc3 1.1.0-1
ubuntu/libmpdec2 2.4.2-1ubuntu1
ubuntu/libmpfr6 4.0.1-1
ubuntu/libmpx2 8.3.0-26ubuntu1~18.04
ubuntu/libncurses5-dev 6.1-1ubuntu1.18.04
ubuntu/libncurses5 6.1-1ubuntu1.18.04
ubuntu/libncursesw5 6.1-1ubuntu1.18.04
ubuntu/libnet-dbus-perl 1.1.0-4build2
ubuntu/libnet-http-perl 6.17-1
ubuntu/libnet-smtp-ssl-perl 1.04-1
ubuntu/libnet-ssleay-perl 1.84-1ubuntu0.2
ubuntu/libnettle6 3.4-1
ubuntu/libnghttp2-14 1.30.0-1ubuntu1
ubuntu/libnorm1 1.5r6 dfsg1-6
ubuntu/libnpth0 1.5-3
ubuntu/libnspr4 2:4.18-1ubuntu1
ubuntu/libnss3 2:3.35-2ubuntu2.7
ubuntu/libp11-kit0 0.23.9-2
ubuntu/libpam-modules-bin 1.1.8-3.6ubuntu2.18.04.1
ubuntu/libpam-modules 1.1.8-3.6ubuntu2.18.04.1
ubuntu/libpam-runtime 1.1.8-3.6ubuntu2.18.04.1
ubuntu/libpam0g 1.1.8-3.6ubuntu2.18.04.1
ubuntu/libpaper-utils 1.1.24 nmu5ubuntu1
ubuntu/libpaper1 1.1.24 nmu5ubuntu1
ubuntu/libpciaccess0 0.14-1
ubuntu/libpcre16-3 2:8.39-9
ubuntu/libpcre3-dev 2:8.39-9
ubuntu/libpcre32-3 2:8.39-9
ubuntu/libpcre3 2:8.39-9
ubuntu/libpcrecpp0v5 2:8.39-9
ubuntu/libpcsclite1 1.8.23-1
ubuntu/libperl5.26 5.26.1-6ubuntu0.3
ubuntu/libpgm-5.2-0 5.2.122~dfsg-2
ubuntu/libpixman-1-0 0.34.0-2
ubuntu/libpixman-1-dev 0.34.0-2
ubuntu/libpng-dev 1.6.34-1ubuntu0.18.04.2
ubuntu/libpng-tools 1.6.34-1ubuntu0.18.04.2
ubuntu/libpng16-16 1.6.34-1ubuntu0.18.04.2
ubuntu/libpoppler73 0.62.0-2ubuntu2.10
ubuntu/libpopt0 1.16-11
ubuntu/libpotrace0 1.14-2
ubuntu/libprocps6 2:3.3.12-3ubuntu1.2
ubuntu/libpsl5 0.19.1-5build1
ubuntu/libptexenc1 2017.20170613.44572-8ubuntu0.1
ubuntu/libpthread-stubs0-dev 0.3-4
ubuntu/libpython3-dev 3.6.7-1~18.04
ubuntu/libpython3-stdlib 3.6.7-1~18.04
ubuntu/libpython3.6-dev 3.6.9-1~18.04
ubuntu/libpython3.6-minimal 3.6.9-1~18.04
ubuntu/libpython3.6-stdlib 3.6.9-1~18.04
ubuntu/libpython3.6 3.6.9-1~18.04
ubuntu/libquadmath0 8.3.0-26ubuntu1~18.04
ubuntu/libreadline-dev 7.0-3
ubuntu/libreadline7 7.0-3
ubuntu/librhash0 1.3.6-2
ubuntu/libroken18-heimdal 7.5.0 dfsg-1
ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-1
ubuntu/libsasl2-2 2.1.27~101-g0780600 dfsg-3ubuntu2.1
ubuntu/libsasl2-modules-db 2.1.27~101-g0780600 dfsg-3ubuntu2.1
ubuntu/libsasl2-modules 2.1.27~101-g0780600 dfsg-3ubuntu2.1
ubuntu/libseccomp2 2.4.1-0ubuntu0.18.04.2
ubuntu/libselinux1 2.7-2build2
ubuntu/libsemanage-common 2.7-2build2
ubuntu/libsemanage1 2.7-2build2
ubuntu/libsensors4 1:3.4.0-4
ubuntu/libsepol1 2.7-1
ubuntu/libsigsegv2 2.12-1
ubuntu/libsm-dev 2:1.2.2-1
ubuntu/libsm6 2:1.2.2-1
ubuntu/libsmartcols1 2.31.1-0.4ubuntu3.5
ubuntu/libsodium23 1.0.16-2
ubuntu/libsqlite3-0 3.22.0-1ubuntu0.3
ubuntu/libss2 1.44.1-1ubuntu1.3
ubuntu/libssl-dev 1.1.1-1ubuntu2.1~18.04.5
ubuntu/libssl1.0.0 1.0.2n-1ubuntu5.3
ubuntu/libssl1.1 1.1.1-1ubuntu2.1~18.04.5
ubuntu/libstdc -7-dev 7.5.0-3ubuntu1~18.04
ubuntu/libstdc 6 8.3.0-26ubuntu1~18.04
ubuntu/libsynctex1 2017.20170613.44572-8ubuntu0.1
ubuntu/libsystemd0 237-3ubuntu10.39
ubuntu/libtasn1-6 4.13-2
ubuntu/libtbb-dev 2017~U7-8
ubuntu/libtbb2 2017~U7-8
ubuntu/libtexlua52 2017.20170613.44572-8ubuntu0.1
ubuntu/libtexluajit2 2017.20170613.44572-8ubuntu0.1
ubuntu/libtext-iconv-perl 1.7-5build6
ubuntu/libtie-ixhash-perl 1.23-2
ubuntu/libtiff5 4.0.9-5ubuntu0.3
ubuntu/libtimedate-perl 2.3000-2
ubuntu/libtinfo-dev 6.1-1ubuntu1.18.04
ubuntu/libtinfo5 6.1-1ubuntu1.18.04
ubuntu/libtry-tiny-perl 0.30-1
ubuntu/libtsan0 8.3.0-26ubuntu1~18.04
ubuntu/libubsan0 7.5.0-3ubuntu1~18.04
ubuntu/libudev1 237-3ubuntu10.39
ubuntu/libunistring2 0.9.9-0ubuntu2
ubuntu/liburi-perl 1.73-1
ubuntu/libuuid1 2.31.1-0.4ubuntu3.5
ubuntu/libuv1 1.18.0-3
ubuntu/libwind0-heimdal 7.5.0 dfsg-1
ubuntu/libwww-perl 6.31-1ubuntu0.1
ubuntu/libwww-robotrules-perl 6.01-1
ubuntu/libx11-6 2:1.6.4-3ubuntu0.2
ubuntu/libx11-data 2:1.6.4-3ubuntu0.2
ubuntu/libx11-dev 2:1.6.4-3ubuntu0.2
ubuntu/libx11-doc 2:1.6.4-3ubuntu0.2
ubuntu/libx11-protocol-perl 0.56-7
ubuntu/libx11-xcb1 2:1.6.4-3ubuntu0.2
ubuntu/libxau-dev 1:1.0.8-1
ubuntu/libxau6 1:1.0.8-1
ubuntu/libxaw7 2:1.0.13-1
ubuntu/libxcb-dri2-0 1.13-2~ubuntu18.04
ubuntu/libxcb-dri3-0 1.13-2~ubuntu18.04
ubuntu/libxcb-glx0 1.13-2~ubuntu18.04
ubuntu/libxcb-present0 1.13-2~ubuntu18.04
ubuntu/libxcb-render0-dev 1.13-2~ubuntu18.04
ubuntu/libxcb-render0 1.13-2~ubuntu18.04
ubuntu/libxcb-shape0 1.13-2~ubuntu18.04
ubuntu/libxcb-shm0-dev 1.13-2~ubuntu18.04
ubuntu/libxcb-shm0 1.13-2~ubuntu18.04
ubuntu/libxcb-sync1 1.13-2~ubuntu18.04
ubuntu/libxcb1-dev 1.13-2~ubuntu18.04
ubuntu/libxcb1 1.13-2~ubuntu18.04
ubuntu/libxcomposite1 1:0.4.4-2
ubuntu/libxcursor1 1:1.1.15-1
ubuntu/libxdamage1 1:1.1.4-3
ubuntu/libxdmcp-dev 1:1.1.2-3
ubuntu/libxdmcp6 1:1.1.2-3
ubuntu/libxext-dev 2:1.3.3-1
ubuntu/libxext6 2:1.3.3-1
ubuntu/libxfixes3 1:5.0.3-1
ubuntu/libxft2 2.3.2-1
ubuntu/libxi6 2:1.7.9-1
ubuntu/libxinerama1 2:1.1.3-1
ubuntu/libxml-parser-perl 2.44-2build3
ubuntu/libxml-twig-perl 1:3.50-1
ubuntu/libxml-xpathengine-perl 0.14-1
ubuntu/libxml2-dev 2.9.4 dfsg1-6.1ubuntu1.3
ubuntu/libxml2 2.9.4 dfsg1-6.1ubuntu1.3
ubuntu/libxmu6 2:1.1.2-2
ubuntu/libxmuu1 2:1.1.2-2
ubuntu/libxpm4 1:3.5.12-1
ubuntu/libxrandr2 2:1.5.1-1
ubuntu/libxrender-dev 1:0.9.10-1
ubuntu/libxrender1 1:0.9.10-1
ubuntu/libxshmfence1 1.3-1
ubuntu/libxt-dev 1:1.1.5-1
ubuntu/libxt6 1:1.1.5-1
ubuntu/libxtst6 2:1.2.3-1
ubuntu/libxv1 2:1.0.11-1
ubuntu/libxxf86dga1 2:1.1.4-1
ubuntu/libxxf86vm1 1:1.1.4-1
ubuntu/libzmq3-dev 4.2.5-1ubuntu0.2
ubuntu/libzmq5 4.2.5-1ubuntu0.2
ubuntu/libzstd1 1.3.3 dfsg-2ubuntu1.1
ubuntu/libzzip-0-13 0.13.62-3.1ubuntu0.18.04.1
ubuntu/linux-libc-dev 4.15.0-91.92
ubuntu/lmodern 2.004.5-3
ubuntu/login 1:4.5-1ubuntu2
ubuntu/lsb-base 9.20170808ubuntu1
ubuntu/m4 1.4.18-1
ubuntu/make 4.1-9.1ubuntu1
ubuntu/manpages-dev 4.15-1
ubuntu/manpages 4.15-1
ubuntu/mawk 1.3.3-17ubuntu3
ubuntu/mime-support 3.60ubuntu1
ubuntu/mount 2.31.1-0.4ubuntu3.5
ubuntu/multiarch-support 2.27-3ubuntu1
ubuntu/nano 2.9.3-2
ubuntu/ncurses-base 6.1-1ubuntu1.18.04
ubuntu/ncurses-bin 6.1-1ubuntu1.18.04
ubuntu/netbase 5.4
ubuntu/openjdk-11-jre-headless 11.0.6 10-1ubuntu1~18.04.1
ubuntu/openjdk-11-jre 11.0.6 10-1ubuntu1~18.04.1
ubuntu/openssh-client 1:7.6p1-4ubuntu0.3
ubuntu/openssl 1.1.1-1ubuntu2.1~18.04.5
ubuntu/parallel 20161222-1
ubuntu/passwd 1:4.5-1ubuntu2
ubuntu/patch 2.7.6-2ubuntu1.1
ubuntu/perl-base 5.26.1-6ubuntu0.3
ubuntu/perl-modules-5.26 5.26.1-6ubuntu0.3
ubuntu/perl-openssl-defaults 3build1
ubuntu/perl 5.26.1-6ubuntu0.3
ubuntu/pinentry-curses 1.1.0-1
ubuntu/pkg-config 0.29.1-0ubuntu2
ubuntu/poppler-data 0.4.8-2
ubuntu/procps 2:3.3.12-3ubuntu1.2
ubuntu/publicsuffix 20180223.1310-1
ubuntu/python-pip-whl 9.0.1-2.3~ubuntu1.18.04.1
ubuntu/python3-asn1crypto 0.24.0-1
ubuntu/python3-cffi-backend 1.11.5-1
ubuntu/python3-crypto 2.6.1-8ubuntu2
ubuntu/python3-cryptography 2.1.4-1ubuntu1.3
ubuntu/python3-dbus 1.2.6-1
ubuntu/python3-dev 3.6.7-1~18.04
ubuntu/python3-distutils 3.6.9-1~18.04
ubuntu/python3-gi 3.26.1-2ubuntu1
ubuntu/python3-idna 2.6-1
ubuntu/python3-keyring 10.6.0-1
ubuntu/python3-keyrings.alt 3.0-1
ubuntu/python3-lib2to3 3.6.9-1~18.04
ubuntu/python3-minimal 3.6.7-1~18.04
ubuntu/python3-pip 9.0.1-2.3~ubuntu1.18.04.1
ubuntu/python3-pkg-resources 39.0.1-2
ubuntu/python3-secretstorage 2.3.1-2
ubuntu/python3-setuptools 39.0.1-2
ubuntu/python3-six 1.11.0-2
ubuntu/python3-wheel 0.30.0-0.2
ubuntu/python3-xdg 0.25-4ubuntu1
ubuntu/python3.6-dev 3.6.9-1~18.04
ubuntu/python3.6-minimal 3.6.9-1~18.04
ubuntu/python3.6 3.6.9-1~18.04
ubuntu/python3 3.6.7-1~18.04
ubuntu/readline-common 7.0-3
ubuntu/rsync 3.1.2-2.1ubuntu1.1
ubuntu/sed 4.4-2
ubuntu/sensible-utils 0.0.12
ubuntu/shared-mime-info 1.9-2
ubuntu/sysstat 11.6.1-1ubuntu0.2
ubuntu/sysvinit-utils 2.88dsf-59.10ubuntu1
ubuntu/t1utils 1.41-2
ubuntu/tar 1.29b-2ubuntu0.1
ubuntu/tex-common 6.09
ubuntu/texlive-base 2017.20180305-1
ubuntu/texlive-binaries 2017.20170613.44572-8ubuntu0.1
ubuntu/texlive-latex-base 2017.20180305-1
ubuntu/tzdata 2019c-0ubuntu0.18.04
ubuntu/ubuntu-keyring 2018.09.18.1~18.04.0
ubuntu/ucf 3.0038
ubuntu/unzip 6.0-21ubuntu1
ubuntu/util-linux 2.31.1-0.4ubuntu3.5
ubuntu/wget 1.19.4-1ubuntu2.2
ubuntu/x11-common 1:7.7 19ubuntu7.1
ubuntu/x11-utils 7.7 3build1
ubuntu/x11-xserver-utils 7.7 7build1
ubuntu/x11proto-core-dev 2018.4-4
ubuntu/x11proto-dev 2018.4-4
ubuntu/x11proto-xext-dev 2018.4-4
ubuntu/xauth 1:1.0.10-1
ubuntu/xdg-user-dirs 0.17-1ubuntu1
ubuntu/xdg-utils 1.1.2-1ubuntu2.3
ubuntu/xorg-sgml-doctools 1:1.11-1
ubuntu/xtrans-dev 1.3.5-1
ubuntu/xz-utils 5.2.2-1.3
ubuntu/zlib1g-dev 1:1.2.11.dfsg-0ubuntu2
ubuntu/zlib1g 1:1.2.11.dfsg-0ubuntu2

Butterfly:Butterfly *
Jaligner:Jaligner *
args4j:args4j 2.33
cisd-jhdf5:cisd-jhdf5 *
com.carrotsearch:hppc 0.7.2
com.clearspring.analytics:stream 2.7.0
com.esotericsoftware:kryo-shaded 4.0.2
com.esotericsoftware:kryo 4.0.0
com.esotericsoftware:minlog 1.3.0
com.esotericsoftware:reflectasm 1.10.0
com.esotericsoftware:reflectasm 1.11.3
com.fasterxml.jackson.core:jackson-annotations 2.4.0
com.fasterxml.jackson.core:jackson-core 2.9.9
com.fasterxml.jackson.core:jackson-databind 2.6.7.1
com.fasterxml.jackson.module:jackson-module-paranamer 2.7.9
com.github.fommil.netlib:core 1.1
com.github.fommil.netlib:core 1.1.2
com.github.fommil.netlib:native_ref-java 1.1
com.github.fommil.netlib:native_system-java 1.1
com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
com.github.fommil:jniloader 1.1
com.github.jsr203hadoop:jsr203hadoop 1.0.3
com.github.rwl:jtransforms 2.4.0
com.google.api-client:google-api-client 1.30.2
com.google.apis:google-api-services-storage v1-rev20190624-1.30.1
com.google.apis:google-api-services-storage v1-rev35-1.20.0
com.google.auth:google-auth-library-credentials 0.17.1
com.google.auth:google-auth-library-oauth2-http 0.17.1
com.google.auto.value:auto-value-annotations 1.6.6
com.google.cloud.bigdataoss:gcs-connector 1.6.3-hadoop2
com.google.cloud.bigdataoss:gcsio 1.6.3
com.google.cloud.bigdataoss:util-hadoop 1.6.3-hadoop2
com.google.cloud.bigdataoss:util 1.6.3
com.google.cloud:google-cloud-core-http 1.89.0
com.google.cloud:google-cloud-core 1.89.0
com.google.cloud:google-cloud-nio 0.107.0-alpha
com.google.cloud:google-cloud-storage 1.89.0
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.8.5
com.google.errorprone:error_prone_annotations 2.3.3
com.google.guava:failureaccess 1.0.1
com.google.guava:guava 15.0
com.google.guava:guava 18.0
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.http-client:google-http-client-appengine 1.31.0
com.google.http-client:google-http-client-jackson2 1.31.0
com.google.http-client:google-http-client 1.31.0
com.google.j2objc:j2objc-annotations 1.3
com.google.oauth-client:google-oauth-client 1.30.1
com.google.protobuf:protobuf-java-util 3.9.1
com.google.protobuf:protobuf-java 3.9.1
com.googlecode.json-simple:json-simple 1.1.1
com.googlecode.protobuf-java-format:protobuf-java-format 1.2
com.nimbusds:nimbus-jose-jwt 3.9
com.ning:compress-lzf 1.0.3
com.opencsv:opencsv 3.4
com.squareup.okhttp:okhttp 2.4.0
com.squareup.okio:okio 1.4.0
com.sun.jersey.contribs:jersey-guice 1.9
com.sun.jersey:jersey-client 1.9
com.sun.jersey:jersey-core 1.9
com.sun.jersey:jersey-json 1.9
com.sun.jersey:jersey-server 1.9
com.thoughtworks.paranamer:paranamer 2.8
com.univocity:univocity-parsers 2.7.3
com.vlkan:flatbuffers 1.2.0-3f79e055
commons-beanutils:commons-beanutils 1.9.3
commons-cli:commons-cli 1.2
commons-codec:commons-codec 1.11
commons-collections:commons-collections 3.2.2
commons-configuration:commons-configuration 1.6
commons-io:commons-io 1.4
commons-io:commons-io 2.4
commons-io:commons-io 2.6
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.2
commons-net:commons-net 3.1
commons-pool:commons-pool 1.6
de.javakaffee:kryo-serializers 0.42
gov.nist.math.jama:gov.nist.math.jama 1.1.1
io.airlift:aircompressor 0.10
io.dropwizard.metrics:metrics-core 3.1.5
io.dropwizard.metrics:metrics-graphite 3.1.5
io.dropwizard.metrics:metrics-json 3.1.5
io.dropwizard.metrics:metrics-jvm 3.1.5
io.netty:netty-all 4.1.17.Final
io.netty:netty 3.9.9.Final
jarhdf5:jarhdf5 2.11.0
java-getopt:java-getopt 1.0.13
javax.annotation:javax.annotation-api 1.3.2
javax.servlet:javax.servlet-api 3.1.0
javax.validation:validation-api 1.1.0.Final
javax.ws.rs:javax.ws.rs-api 2.0.1
jbzip2:jbzip2 0.9
jline:jline 0.9.94
joda-time:joda-time 2.9.9
jrt-fs:jrt-fs 11.0.6
log4j:log4j 1.2.17
net.grey-panther:natural-comparator 1.1
net.minidev:json-smart 1.1.1
net.razorvine:pyrolite 4.13
net.sf.jopt-simple:jopt-simple 5.0.3
net.sf.jung:jung-algorithms 2.0.1
net.sf.jung:jung-api 2.0.1
net.sf.jung:jung-graph-impl 2.0.1
net.sf.opencsv:opencsv 2.3
net.sf.py4j:py4j 0.10.7
org.GNOME.Accessibility.AtkWrapper:java-atk-wrapper *
org.aeonbits.owner:owner 1.0.9
org.antlr:antlr4-runtime 4.7
org.apache.arrow:arrow-format 0.10.0
org.apache.arrow:arrow-memory 0.10.0
org.apache.arrow:arrow-vector 0.10.0
org.apache.avro:avro-guava-dependencies 1.8.2
org.apache.avro:avro-ipc 1.8.2
org.apache.avro:avro-mapred 1.8.2
org.apache.avro:avro 1.8.2
org.apache.commons.collections15:collections-generic 4.01
org.apache.commons:commons-collections4 4.3
org.apache.commons:commons-compress 1.4.1
org.apache.commons:commons-compress 1.8.1
org.apache.commons:commons-configuration2 2.4
org.apache.commons:commons-crypto 1.0.0
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.4
org.apache.commons:commons-lang3 3.8.1
org.apache.commons:commons-math3 3.5
org.apache.commons:commons-text 1.6
org.apache.commons:commons-vfs2 2.0
org.apache.curator:curator-client 2.7.1
org.apache.curator:curator-framework 2.7.1
org.apache.curator:curator-recipes 2.7.1
org.apache.directory.api:api-util 1.0.0-M20
org.apache.hadoop:hadoop-annotations 2.8.2
org.apache.hadoop:hadoop-auth 2.8.2
org.apache.hadoop:hadoop-client 2.8.2
org.apache.hadoop:hadoop-common 2.8.2
org.apache.hadoop:hadoop-hdfs-client 2.8.2
org.apache.hadoop:hadoop-mapreduce-client-app 2.8.2
org.apache.hadoop:hadoop-mapreduce-client-common 2.8.2
org.apache.hadoop:hadoop-mapreduce-client-core 2.8.2
org.apache.hadoop:hadoop-mapreduce-client-jobclient 2.8.2
org.apache.hadoop:hadoop-mapreduce-client-shuffle 2.8.2
org.apache.hadoop:hadoop-yarn-api 2.8.2
org.apache.hadoop:hadoop-yarn-client 2.8.2
org.apache.hadoop:hadoop-yarn-common 2.8.2
org.apache.hadoop:hadoop-yarn-server-common 2.8.2
org.apache.hadoop:hadoop-yarn-server-nodemanager 2.8.2
org.apache.hive:hive-storage-api 2.6.0
org.apache.htrace:htrace-core4 4.0.1-incubating
org.apache.httpcomponents:httpclient 4.5.9
org.apache.httpcomponents:httpcore 4.4.11
org.apache.logging.log4j:log4j-api 2.5
org.apache.logging.log4j:log4j-core 2.5
org.apache.logging.log4j:log4j-jcl 2.3
org.apache.maven.scm:maven-scm-api 1.4
org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
org.apache.maven.scm:maven-scm-provider-svnexe 1.4
org.apache.orc:orc-core 1.5.5
org.apache.orc:orc-mapreduce 1.5.5
org.apache.orc:orc-shims 1.5.5
org.apache.parquet:parquet-avro 1.10.1
org.apache.parquet:parquet-column 1.10.1
org.apache.parquet:parquet-common 1.10.1
org.apache.parquet:parquet-encoding 1.10.1
org.apache.parquet:parquet-format 2.4.0
org.apache.parquet:parquet-hadoop 1.10.1
org.apache.parquet:parquet-jackson 1.10.1
org.apache.spark:spark-catalyst_2.11 2.4.3
org.apache.spark:spark-core_2.11 2.4.3
org.apache.spark:spark-graphx_2.11 2.4.3
org.apache.spark:spark-kvstore_2.11 2.4.3
org.apache.spark:spark-launcher_2.11 2.4.3
org.apache.spark:spark-mllib-local_2.11 2.4.3
org.apache.spark:spark-mllib_2.11 2.4.3
org.apache.spark:spark-network-common_2.11 2.4.3
org.apache.spark:spark-network-shuffle_2.11 2.4.3
org.apache.spark:spark-sketch_2.11 2.4.3
org.apache.spark:spark-sql_2.11 2.4.3
org.apache.spark:spark-streaming_2.11 2.4.3
org.apache.spark:spark-tags_2.11 2.4.3
org.apache.spark:spark-unsafe_2.11 2.4.3
org.apache.xbean:xbean-asm-util 4.8
org.apache.xbean:xbean-asm6-shaded 4.8
org.bdgenomics.adam:adam-codegen-spark2_2.11 0.28.0
org.bdgenomics.adam:adam-core-spark2_2.11 0.28.0
org.bdgenomics.bdg-formats:bdg-formats 0.13.0
org.bdgenomics.utils:utils-cli-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-io-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-metrics-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-misc-spark2_2.11 0.2.15
org.broadinstitute.hellbender.Main:gatk-package 4.1.4.0-local
org.broadinstitute.hellbender.Main:gatk-package 4.1.4.0-spark
org.codehaus.janino:commons-compiler 3.0.9
org.codehaus.janino:janino 3.0.9
org.codehaus.jettison:jettison 1.1
org.codehaus.mojo:animal-sniffer-annotations 1.18
org.codehaus.plexus:plexus-interpolation 1.0
org.codehaus.plexus:plexus-utils 1.5.6
org.debian.security.UpdateCertificates:ca-certificates-java *
org.disq-bio:disq 0.3.3
org.eclipse.jdt.internal.jarinjarloader.JarRsrcLoader:ExitTester *
org.eclipse.jetty:jetty-client 9.3.24.v20180605
org.eclipse.jetty:jetty-continuation 9.3.24.v20180605
org.eclipse.jetty:jetty-http 9.3.24.v20180605
org.eclipse.jetty:jetty-io 9.3.24.v20180605
org.eclipse.jetty:jetty-plus 9.3.24.v20180605
org.eclipse.jetty:jetty-proxy 9.3.24.v20180605
org.eclipse.jetty:jetty-security 9.3.24.v20180605
org.eclipse.jetty:jetty-server 9.3.24.v20180605
org.eclipse.jetty:jetty-servlet 9.3.24.v20180605
org.eclipse.jetty:jetty-servlets 9.3.24.v20180605
org.eclipse.jetty:jetty-util 9.3.24.v20180605
org.fusesource.leveldbjni:leveldbjni-all 1.8
org.genomicsdb:genomicsdb 1.1.0.1
org.glassfish.hk2.external:aopalliance-repackaged 2.4.0-b34
org.glassfish.hk2.external:javax.inject 2.4.0-b34
org.glassfish.hk2:hk2-api 2.4.0-b34
org.glassfish.hk2:hk2-locator 2.4.0-b34
org.glassfish.hk2:hk2-utils 2.4.0-b34
org.glassfish.hk2:osgi-resource-locator 1.0.1
org.glassfish.jersey.bundles.repackaged:jersey-guava 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet-core 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet 2.22.2
org.glassfish.jersey.core:jersey-client 2.22.2
org.glassfish.jersey.core:jersey-common 2.22.2
org.glassfish.jersey.core:jersey-server 2.22.2
org.glassfish.jersey.media:jersey-media-jaxb 2.22.2
org.javassist:javassist 3.18.2-GA
org.jgrapht:jgrapht-core 0.9.1
org.jpmml:pmml-model 1.2.15
org.jpmml:pmml-schema 1.2.15
org.jvnet:tiger-types 1.4
org.mortbay.jetty:jetty-sslengine 6.1.26
org.mortbay.jetty:jetty-util 6.1.26
org.ojalgo:ojalgo-commons-math3 1.0.0
org.ojalgo:ojalgo 44.0.0
org.reflections:reflections 0.9.10
org.roaringbitmap:RoaringBitmap 0.7.45
org.roaringbitmap:shims 0.7.45
org.slf4j:jcl-over-slf4j 1.7.16
org.slf4j:slf4j-api 1.7.25
org.slf4j:slf4j-log4j12 1.7.21
org.spark-project.spark:unused 1.0.0
org.threeten:threetenbp 1.3.3
org.usadellab.trimmomatic.Trimmomatic:trimmomatic 0.36
org.xerial:sqlite-jdbc 3.20.1
picard:picard 2.20.3-SNAPSHOT
sam:sam 1.103

jquery-ui 1.12.1