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Package Usage : maven : org.genomicsdb:genomicsdb

Explore the latest package usage data for org.genomicsdb:genomicsdb in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 167
Total downloads: 33,703,415
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

  • version: 1.4.3, 1.4.4
Latest release: 10 months ago - 40,749,690 downloads - 513 dependencies
ctomlins/tellread_2022 latest

  • version: 1.1.0.1
Latest release: about 3 years ago - 62 downloads - 711 dependencies
intelliseqngs/bcl-to-fq 1.0.2

  • version: 1.4.3
Latest release: almost 3 years ago - 205 downloads - 1,047 dependencies
dmiller15/gatk 4.1.7.0R0.1

  • version: 1.2.1
Latest release: almost 6 years ago - 95 downloads - 866 dependencies
nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

  • version: 1.3.2
Latest release: 11 months ago - 49,564 downloads - 738 dependencies
vanallenlab/sv-pipeline rlc_aou_evidencetable_fix

  • version: 1.3.2
Latest release: almost 2 years ago - 26,632 downloads - 1,231 dependencies
intelliseqngs/task_bam-metrics-hg38 1.0.2

  • version: 1.4.3
Latest release: almost 3 years ago - 130 downloads - 1,144 dependencies
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 1.4.4, 1.5.1
Latest release: over 1 year ago - 186,109 downloads - 912 dependencies
fionahak/gatk_genotube v0.0.1

  • version: 1.4.3
Latest release: almost 3 years ago - 104 downloads - 303 dependencies
intelliseqngs/gatk-4.1.9.0 1.0.0

  • version: 1.3.2
Latest release: about 5 years ago - 2,229 downloads - 967 dependencies
ctomlins/testuniv latest

  • version: 1.1.0.1
Latest release: over 4 years ago - 102 downloads - 536 dependencies
intelliseqngs/task_bed-to-interval-list 1.1.5

  • version: 1.4.3
Latest release: almost 3 years ago - 1,044 downloads - 1,057 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 1.4.3
Latest release: about 3 years ago - 403 downloads - 849 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 110 downloads - 828 dependencies
hoonbiolab/vcf-kit v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 86 downloads - 840 dependencies
hoonbiolab/gatk4_scnv v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 62 downloads - 811 dependencies
hoonbiolab/ascat v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 41 downloads - 792 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 1.4.3
Latest release: about 3 years ago - 131 downloads - 1,081 dependencies
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

  • version: 1.3.2
Latest release: over 4 years ago - 197 downloads - 1,057 dependencies
intelliseqngs/gatk-4.2.4.1 1.0.1

  • version: 1.4.3
Latest release: about 3 years ago - 177 downloads - 1,118 dependencies
ctomlins/testuniv_update latest

  • version: 1.1.0.1
Latest release: about 5 years ago - 186 downloads - 758 dependencies
intelliseqngs/resources-pgx-polygenic 1.2.4

  • version: 1.4.3
Latest release: over 2 years ago - 499 downloads - 1,059 dependencies
rahulg603/gatk_samtools_docker latest

  • version: 1.4.3
Latest release: almost 3 years ago - 17,088 downloads - 839 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 1.4.3
Latest release: almost 3 years ago - 687 downloads - 1,367 dependencies
intelliseqngs/task_vcf-anno-custom 1.0.1

  • version: 1.2.1
Latest release: over 5 years ago - 72 downloads - 1,025 dependencies
hoonbiolab/hl_base v1.2

  • version: 1.3.0
Latest release: over 3 years ago - 177 downloads - 873 dependencies
hoonbiolab/sequenza v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 36 downloads - 801 dependencies
intelliseqngs/task_calibrate-dragstr-model-grch38-no-alt 1.0.1

  • version: 1.4.3
Latest release: almost 3 years ago - 116 downloads - 1,049 dependencies
intelliseqngs/collect-hs-metrics 1.0.0

  • version: 1.2.1
Latest release: almost 6 years ago - 221 downloads - 928 dependencies
hoonbiolab/svtools v0.4.0

  • version: 1.3.0
Latest release: about 2 years ago - 132 downloads - 681 dependencies
trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

  • version: 1.0.0-rc2
Latest release: over 4 years ago - 188 downloads - 805 dependencies
man4ish/demuxlet_v3 latest

  • version: 1.0.4
Latest release: about 3 years ago - 80 downloads - 618 dependencies
vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

  • version: 1.3.2
Latest release: about 3 years ago - 93,809 downloads - 1,101 dependencies
gru4/scan2workinghg38 latest

  • version: 1.4.3
Latest release: over 2 years ago - 71 downloads - 776 dependencies
gru4/scan2fixedhg38 latest

  • version: 1.4.3
Latest release: over 2 years ago - 95 downloads - 777 dependencies
hoonbiolab/ngscheckmate v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 37 downloads - 653 dependencies
intelliseqngs/gatk-4.1.9.0-hg38 1.0.0

  • version: 1.3.2
Latest release: almost 5 years ago - 27 downloads - 677 dependencies
bokebiotech/qcpipe v6

  • version: 1.1.2.2, 1.4.3
Latest release: over 2 years ago - 421 downloads - 1,186 dependencies
qdidiscoveryservices/gatk-v2461_bwa_vardict latest

  • version: 1.4.3
Latest release: almost 3 years ago - 15 downloads - 1,069 dependencies
yiluxiangbei/pumpkin-gatk-notebook 1.0

  • version: 1.4.1
Latest release: over 4 years ago - 24 downloads - 1,570 dependencies
bryoinformatics/variant-id v1.0.0

A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).

  • version: 1.4.3
Latest release: almost 3 years ago - 108 downloads - 479 dependencies
nahyunkong/mito v6

  • version: 1.4.3
Latest release: almost 3 years ago - 16,889 downloads - 2,488 dependencies
hoonbiolab/sratools v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 21 downloads - 652 dependencies
intelliseqngs/gatk-4.1.6.0-grch38-no-alt 1.0.0

  • version: 1.2.1
Latest release: almost 6 years ago - 24 downloads - 437 dependencies
dabbleofdevops/nextneopi 20230817

  • version: 1.4.3
Latest release: over 2 years ago - 136 downloads - 499 dependencies
ctomlins/tseq_2 latest

  • version: 1.1.0.1
Latest release: over 5 years ago - 30 downloads - 538 dependencies
ctomlins/tseq latest

  • version: 1.1.0.1
Latest release: over 5 years ago - 25 downloads - 536 dependencies
hoonbiolab/clustersv v1.1

  • version: 1.3.0
Latest release: almost 4 years ago - 24 downloads - 718 dependencies
intelliseqngs/pharmcat-resources 1.1.0

  • version: 1.4.3
Latest release: almost 4 years ago - 81 downloads - 964 dependencies
hoonbiolab/mixcr v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 41 downloads - 710 dependencies
hoonbiolab/funcotate v1.1

  • version: 1.0.0-rc2, 1.3.0
Latest release: over 4 years ago - 39 downloads - 777 dependencies
hoonbiolab/lohhla v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 74 downloads - 708 dependencies
hoonbiolab/star v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 35 downloads - 782 dependencies
skchronicles/genome-seek_trim_map v0.1.1

Official docker image for trimming and alignment with genome-seek

  • version: 1.4.3
Latest release: over 1 year ago - 510 downloads - 1,367 dependencies
hoonbiolab/imagemagick v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 40 downloads - 681 dependencies
hoonbiolab/pvacseq v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 40 downloads - 682 dependencies
hoonbiolab/prada v1.2

  • version: 1.3.0
Latest release: about 4 years ago - 79 downloads - 699 dependencies
hoonbiolab/msisensor-pro v1.0

  • version: 1.3.0
Latest release: over 3 years ago - 16 downloads - 688 dependencies
hoonbiolab/test2 v1.0

  • version: 1.0.0-rc2, 1.3.0
Latest release: over 4 years ago - 24 downloads - 759 dependencies
hoonbiolab/ensembl_vep v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 36 downloads - 682 dependencies
hoonbiolab/titan v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 48 downloads - 754 dependencies
hoonbiolab/optitype v1.1

  • version: 1.0.0-rc2, 1.3.0
Latest release: over 4 years ago - 35 downloads - 776 dependencies
hoonbiolab/vep v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 35 downloads - 682 dependencies
chosenobih/pamlinc v0.4

A workflow for Parallel Annotation of Modified RNAs, LincRNAs & Transcript Abundance Quantification.

  • version: 1.4.1
Latest release: over 2 years ago - 180 downloads - 1,036 dependencies
intelliseqngs/broad-institute-hg38 1.0.0

  • version: 1.2.1
Latest release: almost 6 years ago - 17 downloads - 930 dependencies
cloxd/ctat-mutations 3.3.1

  • version: 1.3.2
Latest release: almost 3 years ago - 55 downloads - 533 dependencies
intelliseqngs/prodia_gatk-4.2.0.0 1.0.1

  • version: 1.3.2
Latest release: about 3 years ago - 125 downloads - 1,014 dependencies
dpuiu1/mitohpc latest

  • version: 1.4.4
Latest release: over 2 years ago - 218 downloads - 844 dependencies
hoonbiolab/revertsam v1.1

  • version: 1.3.0, 1.3.2
Latest release: over 4 years ago - 39 downloads - 884 dependencies
almadengenomics/gatk 4.4.0.0

  • version: 1.4.4
Latest release: over 2 years ago - 43 downloads - 551 dependencies
intelliseqngs/task_gvcf-genotype-by-vcf 0.0.3

  • version: 1.2.1
Latest release: almost 6 years ago - 48 downloads - 844 dependencies
crukmi/target-snakemake-docker 3.2.2

  • version: 1.4.3
Latest release: over 3 years ago - 206 downloads - 1,148 dependencies
chgyi/gatk 4

  • version: 1.1.0.1
Latest release: about 6 years ago - 34 downloads - 400 dependencies
intelliseqngs/task_vcf-varcall-metrics-grch38-no-alt 1.1.2

  • version: 1.4.3
Latest release: almost 3 years ago - 78 downloads - 1,038 dependencies
bioxfu/ddngs latest

  • version: 1.4.3
Latest release: almost 3 years ago - 44 downloads - 1,055 dependencies
hoonbiolab/test v1.0

  • version: 1.0.0-rc2, 1.3.0
Latest release: over 4 years ago - 23 downloads - 779 dependencies
barryd237/week2 latest

  • version: 1.4.3
Latest release: about 3 years ago - 28 downloads - 449 dependencies
coacervate/provider latest

  • version: 1.4.3
Latest release: almost 3 years ago - 50 downloads - 270 dependencies
hoonbiolab/freebayes v1.1

  • version: 1.3.0
Latest release: over 4 years ago - 34 downloads - 682 dependencies
arnstrm2/gatk 4.4.0

  • version: 1.4.4
Latest release: over 2 years ago - 136 downloads - 1,044 dependencies
yinxiu/variantalker v2.0

NextFlow pipeline to functionally annotate DNA variants in VCF files

  • version: 1.4.3
Latest release: over 2 years ago - 282 downloads - 1,068 dependencies
keithgraham5/cnvrobot_v4_2 latest

  • version: 1.4.3
Latest release: about 3 years ago - 49 downloads - 685 dependencies
oriolpich/rsem latest

  • version: 1.2.1
Latest release: about 3 years ago - 27 downloads - 432 dependencies
nahyunkong/sv-pipeline latest

  • version: 1.3.2
Latest release: about 3 years ago - 78 downloads - 1,083 dependencies
intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

  • version: 1.2.1
Latest release: over 5 years ago - 38,682 downloads - 842 dependencies
philiplin1212/gatk latest

  • version: 1.4.4
Latest release: almost 3 years ago - 38 downloads - 1,137 dependencies